RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 CBY1Q9Y3M2 126 aa11.6□□□□□ -0.55
PNKP-212ENST00000599454 LIMD2Q9BT23 127 aa11.59□□□□□ -0.55
PNKP-212ENST00000599454 YPEL4Q96NS1 127 aa11.58□□□□□ -0.56
PNKP-212ENST00000599454 FSIP2Q5CZC0 6907 aa11.57□□□□□ -0.56
PNKP-212ENST00000599454 LEPROTL1O95214 131 aa11.57□□□□□ -0.56
PNKP-212ENST00000599454 CFC1BP0CG36 223 aa11.57□□□□□ -0.56
PNKP-212ENST00000599454 LGALS3P17931 250 aaKnown RBP11.57□□□□□ -0.56
PNKP-212ENST00000599454 HINT1P49773 126 aaPredicted RBP11.57□□□□□ -0.56
PNKP-212ENST00000599454 KRTAP19-2Q3LHN2 52 aa11.57□□□□□ -0.56
PNKP-212ENST00000599454 ST20-AS1Q8NBB2 130 aa11.57□□□□□ -0.56
PNKP-212ENST00000599454 SLC25A34Q6PIV7 304 aa11.56□□□□□ -0.56
PNKP-212ENST00000599454 DPM2O94777 84 aa11.54□□□□□ -0.56
PNKP-212ENST00000599454 SPRR1BP22528 89 aa11.54□□□□□ -0.56
PNKP-212ENST00000599454 PCOTHQ58A44 107 aa11.54□□□□□ -0.56
PNKP-212ENST00000599454 MT1HP80294 61 aa11.53□□□□□ -0.56
PNKP-212ENST00000599454 SOSTDC1Q6X4U4 206 aa11.53□□□□□ -0.56
PNKP-212ENST00000599454 IGLV8-61A0A075B6I0 122 aa11.52□□□□□ -0.57
PNKP-212ENST00000599454 HSPB8Q9UJY1 196 aa11.51□□□□□ -0.57
PNKP-212ENST00000599454 IGKCP01834 107 aa11.5□□□□□ -0.57
PNKP-212ENST00000599454 NPC2P61916 151 aa11.49□□□□□ -0.57
PNKP-212ENST00000599454 DHRS4-AS1Q9P1J3 65 aa11.49□□□□□ -0.57
PNKP-212ENST00000599454 LAMTOR3Q9UHA4 124 aa11.49□□□□□ -0.57
PNKP-212ENST00000599454 A0A0J9YXY3 114 aa11.48□□□□□ -0.57
PNKP-212ENST00000599454 EIF4EBP3O60516 100 aaPredicted RBP11.48□□□□□ -0.57
PNKP-212ENST00000599454 SERF1AO75920 110 aa11.48□□□□□ -0.57
PNKP-212ENST00000599454 ADAMTSL4-AS1Q5T5F5 129 aa11.48□□□□□ -0.57
PNKP-212ENST00000599454 HRCT1Q6UXD1 115 aa11.48□□□□□ -0.57
PNKP-212ENST00000599454 C9orf92A6NGG3 77 aa11.47□□□□□ -0.57
PNKP-212ENST00000599454 PMCHL2Q9BQD1 86 aa11.47□□□□□ -0.57
PNKP-212ENST00000599454 LINC00310P59036 64 aa11.46□□□□□ -0.57
PNKP-212ENST00000599454 CD164Q04900 197 aa11.45□□□□□ -0.58
PNKP-212ENST00000599454 SPANXCQ9NY87 97 aa11.45□□□□□ -0.58
PNKP-212ENST00000599454 TRGC2P03986 189 aa11.44□□□□□ -0.58
PNKP-212ENST00000599454 E9PLD3 99 aa11.43□□□□□ -0.58
PNKP-212ENST00000599454 FABP4P15090 132 aa11.43□□□□□ -0.58
PNKP-212ENST00000599454 OR13C6PQ8NH95 151 aa11.43□□□□□ -0.58
PNKP-212ENST00000599454 LINC00308Q8TCZ7 52 aa11.41□□□□□ -0.58
PNKP-212ENST00000599454 SPANXDQ9BXN6 97 aa11.41□□□□□ -0.58
PNKP-212ENST00000599454 LORP23490 312 aaPredicted RBP11.4□□□□□ -0.58
PNKP-212ENST00000599454 PRO1933Q9H354 126 aa11.4□□□□□ -0.58
PNKP-212ENST00000599454 TIMM17BO60830 172 aa11.39□□□□□ -0.59
PNKP-212ENST00000599454 ELOF1P60002 83 aaKnown RBP11.39□□□□□ -0.59
PNKP-212ENST00000599454 Q5XG85 94 aa11.39□□□□□ -0.59
PNKP-212ENST00000599454 COX7BP24311 80 aa11.38□□□□□ -0.59
PNKP-212ENST00000599454 KRTAP10-6P60371 365 aaPredicted RBP11.38□□□□□ -0.59
PNKP-212ENST00000599454 LITAFQ99732 161 aa11.38□□□□□ -0.59
PNKP-212ENST00000599454 TAL2Q16559 108 aa11.37□□□□□ -0.59
PNKP-212ENST00000599454 H7C2G1 150 aa11.36□□□□□ -0.59
PNKP-212ENST00000599454 TEX49A0A1B0GTD5 131 aa11.35□□□□□ -0.59
PNKP-212ENST00000599454 Q1RN00 199 aa11.35□□□□□ -0.59
PNKP-212ENST00000599454 LINC00518Q8N0U6 118 aa11.35□□□□□ -0.59
PNKP-212ENST00000599454 C6orf99Q4VX62 202 aa11.34□□□□□ -0.59
PNKP-212ENST00000599454 DEFB105AQ8NG35 78 aa11.33□□□□□ -0.6
PNKP-212ENST00000599454 AKR1D1P51857 326 aa11.32□□□□□ -0.6
PNKP-212ENST00000599454 M0R2T5 61 aa11.31□□□□□ -0.6
PNKP-212ENST00000599454 RPL37P61927 97 aaKnown RBP11.31□□□□□ -0.6
PNKP-212ENST00000599454 C1orf195Q5TG92 126 aa11.31□□□□□ -0.6
PNKP-212ENST00000599454 TRBV7-6A0A0J9YX20 115 aa11.3□□□□□ -0.6
PNKP-212ENST00000599454 SYS1-DBNDD2H3BUS1 97 aa11.28□□□□□ -0.6
PNKP-212ENST00000599454 COX6B2Q6YFQ2 88 aa11.28□□□□□ -0.6
PNKP-212ENST00000599454 SMIM29Q86T20 159 aa11.28□□□□□ -0.6
PNKP-212ENST00000599454 ZNF815PA8K554 130 aa11.27□□□□□ -0.61
PNKP-212ENST00000599454 IGLV5-48A0A075B6I7 105 aa11.25□□□□□ -0.61
PNKP-212ENST00000599454 A0A1B0GWB2 263 aa11.25□□□□□ -0.61
PNKP-212ENST00000599454 LINC01545Q5VT33 79 aa11.23□□□□□ -0.61
PNKP-212ENST00000599454 COPS9Q8WXC6 57 aa11.22□□□□□ -0.61
PNKP-212ENST00000599454 FLGP20930 4061 aaPredicted RBP11.2□□□□□ -0.62
PNKP-212ENST00000599454 TCL1BO95988 128 aa11.2□□□□□ -0.62
PNKP-212ENST00000599454 A4D1N5 150 aa11.19□□□□□ -0.62
PNKP-212ENST00000599454 COLCA2A8K830 154 aa11.19□□□□□ -0.62
PNKP-212ENST00000599454 PET117Q6UWS5 81 aa11.19□□□□□ -0.62
PNKP-212ENST00000599454 TTTY13Q9BZ97 58 aa11.19□□□□□ -0.62
PNKP-212ENST00000599454 A0A0G2JQZ4 141 aa11.18□□□□□ -0.62
PNKP-212ENST00000599454 NHP2Q9NX24 153 aaKnown RBP11.17□□□□□ -0.62
PNKP-212ENST00000599454 IFITM1P13164 125 aa11.16□□□□□ -0.62
PNKP-212ENST00000599454 A6NDN8 102 aa11.15□□□□□ -0.62
PNKP-212ENST00000599454 SCGB1D4Q6XE38 83 aa11.15□□□□□ -0.62
PNKP-212ENST00000599454 Q6ZVH6 145 aa11.13□□□□□ -0.63
PNKP-212ENST00000599454 F8WEM9 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BKO60814 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BJP06899 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BOP23527 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BBP33778 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BDP58876 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BCP62807 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST2H2BEQ16778 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BHQ93079 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BNQ99877 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 HIST1H2BMQ99879 126 aa11.1□□□□□ -0.63
PNKP-212ENST00000599454 TRAV13-2A0A0B4J235 113 aa11.07□□□□□ -0.64
PNKP-212ENST00000599454 C3orf79P0CE67 100 aa11.07□□□□□ -0.64
PNKP-212ENST00000599454 MUSTN1Q8IVN3 82 aa11.06□□□□□ -0.64
PNKP-212ENST00000599454 SMIM11BQ8TCY0 68 aa11.05□□□□□ -0.64
PNKP-212ENST00000599454 Q6JHZ5 121 aa11.04□□□□□ -0.64
PNKP-212ENST00000599454 ATP11AUNQ6ZP68 121 aa11.04□□□□□ -0.64
PNKP-212ENST00000599454 PCP2Q8IVA1 136 aa11.04□□□□□ -0.64
PNKP-212ENST00000599454 Q75L30 129 aa11.03□□□□□ -0.64
PNKP-212ENST00000599454 VAMP3Q15836 100 aa11.02□□□□□ -0.65
PNKP-212ENST00000599454 Q6Q795 121 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms