RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ERC2-IT1O76042 136 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 NPC2P61916 151 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 S100A7L2Q5SY68 101 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 ADAMTSL4-AS1Q5T5F5 129 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 Q8N377 158 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 Q9BRP9 147 aa7.65□□□□□ -1.18
TRIM28-211ENST00000597968 MOBPQ13875 183 aa7.64□□□□□ -1.19
TRIM28-211ENST00000597968 SOSTDC1Q6X4U4 206 aa7.64□□□□□ -1.19
TRIM28-211ENST00000597968 IGLV9-49A0A0B4J1Y8 123 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 A0A0J9YXY3 114 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BKO60814 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BJP06899 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BOP23527 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BBP33778 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BDP58876 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BCP62807 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST2H2BEQ16778 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BHQ93079 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BNQ99877 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 HIST1H2BMQ99879 126 aa7.63□□□□□ -1.19
TRIM28-211ENST00000597968 TRAV23DV6A0A075B6W5 121 aa7.62□□□□□ -1.19
TRIM28-211ENST00000597968 E9PLD3 99 aa7.62□□□□□ -1.19
TRIM28-211ENST00000597968 HINT1P49773 126 aaPredicted RBP7.62□□□□□ -1.19
TRIM28-211ENST00000597968 SYS1-DBNDD2H3BUS1 97 aa7.61□□□□□ -1.19
TRIM28-211ENST00000597968 LINC01547P58512 204 aaPredicted RBP7.61□□□□□ -1.19
TRIM28-211ENST00000597968 ZNF73O43830 326 aaPredicted RBP7.6□□□□□ -1.19
TRIM28-211ENST00000597968 SLC25A34Q6PIV7 304 aa7.6□□□□□ -1.19
TRIM28-211ENST00000597968 XP32Q5T750 250 aa7.59□□□□□ -1.19
TRIM28-211ENST00000597968 LINC01545Q5VT33 79 aa7.57□□□□□ -1.2
TRIM28-211ENST00000597968 LITAFQ99732 161 aa7.57□□□□□ -1.2
TRIM28-211ENST00000597968 LIMD2Q9BT23 127 aa7.57□□□□□ -1.2
TRIM28-211ENST00000597968 TTTY13Q9BZ97 58 aa7.57□□□□□ -1.2
TRIM28-211ENST00000597968 SPANXCQ9NY87 97 aa7.57□□□□□ -1.2
TRIM28-211ENST00000597968 LOC105371267A0A1B0GV96 52 aa7.56□□□□□ -1.2
TRIM28-211ENST00000597968 SPRR1BP22528 89 aa7.56□□□□□ -1.2
TRIM28-211ENST00000597968 C9orf153Q5TBE3 101 aa7.56□□□□□ -1.2
TRIM28-211ENST00000597968 DHRS4-AS1Q9P1J3 65 aa7.56□□□□□ -1.2
TRIM28-211ENST00000597968 KRTAP9-6A0A140TA67 174 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 TIMM17BO60830 172 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 C3orf79P0CE67 100 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 PET117Q6UWS5 81 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 ST20-AS1Q8NBB2 130 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 LINC00308Q8TCZ7 52 aa7.55□□□□□ -1.2
TRIM28-211ENST00000597968 ZNF815PA8K554 130 aa7.53□□□□□ -1.2
TRIM28-211ENST00000597968 LINC00518Q8N0U6 118 aa7.53□□□□□ -1.2
TRIM28-211ENST00000597968 SPANXDQ9BXN6 97 aa7.53□□□□□ -1.2
TRIM28-211ENST00000597968 KRTDAPP60985 99 aa7.52□□□□□ -1.21
TRIM28-211ENST00000597968 OR13C6PQ8NH95 151 aa7.52□□□□□ -1.21
TRIM28-211ENST00000597968 LAMTOR3Q9UHA4 124 aa7.52□□□□□ -1.21
TRIM28-211ENST00000597968 CD164Q04900 197 aa7.51□□□□□ -1.21
TRIM28-211ENST00000597968 KRTAP4-1Q9BYQ7 146 aa7.51□□□□□ -1.21
TRIM28-211ENST00000597968 COA6Q5JTJ3 125 aaKnown RBP7.5□□□□□ -1.21
TRIM28-211ENST00000597968 TRBV7-6A0A0J9YX20 115 aa7.49□□□□□ -1.21
TRIM28-211ENST00000597968 ELOF1P60002 83 aaKnown RBP7.49□□□□□ -1.21
TRIM28-211ENST00000597968 LCE2DQ5TA82 110 aaPredicted RBP7.49□□□□□ -1.21
TRIM28-211ENST00000597968 ANKRD39Q53RE8 183 aa7.48□□□□□ -1.21
TRIM28-211ENST00000597968 ATOH7Q8N100 152 aa7.48□□□□□ -1.21
TRIM28-211ENST00000597968 COPS9Q8WXC6 57 aa7.48□□□□□ -1.21
TRIM28-211ENST00000597968 Q5XG85 94 aa7.47□□□□□ -1.21
TRIM28-211ENST00000597968 COX7BP24311 80 aa7.46□□□□□ -1.22
TRIM28-211ENST00000597968 PRO1933Q9H354 126 aa7.46□□□□□ -1.22
TRIM28-211ENST00000597968 TEX49A0A1B0GTD5 131 aa7.45□□□□□ -1.22
TRIM28-211ENST00000597968 SCGB1D4Q6XE38 83 aa7.45□□□□□ -1.22
TRIM28-211ENST00000597968 C6orf99Q4VX62 202 aa7.44□□□□□ -1.22
TRIM28-211ENST00000597968 PCP2Q8IVA1 136 aa7.44□□□□□ -1.22
TRIM28-211ENST00000597968 TAL2Q16559 108 aa7.43□□□□□ -1.22
TRIM28-211ENST00000597968 HRCT1Q6UXD1 115 aa7.43□□□□□ -1.22
TRIM28-211ENST00000597968 Q6ZVH6 145 aa7.43□□□□□ -1.22
TRIM28-211ENST00000597968 A0A1B0GWB2 263 aa7.42□□□□□ -1.22
TRIM28-211ENST00000597968 C20orf202A1L168 122 aa7.42□□□□□ -1.22
TRIM28-211ENST00000597968 A4D1N5 150 aa7.42□□□□□ -1.22
TRIM28-211ENST00000597968 IFITM1P13164 125 aa7.42□□□□□ -1.22
TRIM28-211ENST00000597968 DEFB105AQ8NG35 78 aa7.42□□□□□ -1.22
TRIM28-211ENST00000597968 H7C2G1 150 aa7.41□□□□□ -1.22
TRIM28-211ENST00000597968 AKR1D1P51857 326 aa7.41□□□□□ -1.22
TRIM28-211ENST00000597968 MUSTN1Q8IVN3 82 aa7.41□□□□□ -1.22
TRIM28-211ENST00000597968 IGLV5-48A0A075B6I7 105 aa7.4□□□□□ -1.22
TRIM28-211ENST00000597968 A6NDN8 102 aa7.4□□□□□ -1.22
TRIM28-211ENST00000597968 CFC1BP0CG36 223 aa7.4□□□□□ -1.22
TRIM28-211ENST00000597968 LCE2CQ5TA81 110 aa7.4□□□□□ -1.22
TRIM28-211ENST00000597968 NHP2Q9NX24 153 aaKnown RBP7.4□□□□□ -1.22
TRIM28-211ENST00000597968 TMA7Q9Y2S6 64 aaKnown RBP7.4□□□□□ -1.22
TRIM28-211ENST00000597968 IGLV8-61A0A075B6I0 122 aa7.38□□□□□ -1.23
TRIM28-211ENST00000597968 Q1RN00 199 aa7.38□□□□□ -1.23
TRIM28-211ENST00000597968 PCOTHQ58A44 107 aa7.38□□□□□ -1.23
TRIM28-211ENST00000597968 KRTAP19-2Q3LHN2 52 aa7.37□□□□□ -1.23
TRIM28-211ENST00000597968 C9orf92A6NGG3 77 aa7.36□□□□□ -1.23
TRIM28-211ENST00000597968 SMIM29Q86T20 159 aa7.36□□□□□ -1.23
TRIM28-211ENST00000597968 TRAV13-2A0A0B4J235 113 aa7.35□□□□□ -1.23
TRIM28-211ENST00000597968 A0A0G2JQZ4 141 aa7.35□□□□□ -1.23
TRIM28-211ENST00000597968 HIST3H2BBQ8N257 126 aa7.35□□□□□ -1.23
TRIM28-211ENST00000597968 MT1HP80294 61 aa7.34□□□□□ -1.23
TRIM28-211ENST00000597968 C1orf195Q5TG92 126 aa7.34□□□□□ -1.23
TRIM28-211ENST00000597968 HIST1H2BLQ99880 126 aa7.34□□□□□ -1.23
TRIM28-211ENST00000597968 TCL1BO95988 128 aa7.33□□□□□ -1.24
TRIM28-211ENST00000597968 SNRPEP62304 92 aaKnown RBP7.33□□□□□ -1.24
TRIM28-211ENST00000597968 SMIM11BQ8TCY0 68 aa7.33□□□□□ -1.24
TRIM28-211ENST00000597968 S100A2P29034 98 aa7.32□□□□□ -1.24
TRIM28-211ENST00000597968 CRCT1Q9UGL9 99 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms