RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 KMT2BQ9UMN6 2715 aaPredicted RBP2.42□□□□□ -2.02
VMP1-208ENST00000588617 IGLC7A0M8Q6 106 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 WT1-ASQ06250 92 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 FAM74A4Q5TZK3 123 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 PLAC4Q8WY50 150 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 DSCR8Q96T75 97 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 HIVEP3Q5T1R4 2406 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 TENM4Q6N022 2769 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 NBASA2RRP1 2371 aa2.41□□□□□ -2.02
VMP1-208ENST00000588617 TRAV30A0A087WSZ9 112 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 A0A087WWC5 75 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 TRAV13-2A0A0B4J235 113 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 APOC3P02656 99 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 SFTA3P0C7M3 94 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 TTC9CQ8N5M4 171 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 TRGV9Q99603 122 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 MGST2Q99735 147 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 TMEM167BQ9NRX6 74 aa2.4□□□□□ -2.03
VMP1-208ENST00000588617 ESPL1Q14674 2120 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 PKDREJQ9NTG1 2253 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 USP9YO00507 2555 aaPredicted RBP2.39□□□□□ -2.03
VMP1-208ENST00000588617 AKAP9Q99996 3911 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 A0A096LNT2 108 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 H3BUA1 57 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 I3L2K1 104 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 DEFA5Q01523 94 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 PLGLAQ15195 96 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 SPINK9Q5DT21 86 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 HILPDAQ9Y5L2 63 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 CELSR1Q9NYQ6 3014 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 UTP20O75691 2785 aaKnown RBP2.39□□□□□ -2.03
VMP1-208ENST00000588617 APCP25054 2843 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 NAV2Q8IVL1 2488 aa2.39□□□□□ -2.03
VMP1-208ENST00000588617 MAP1AP78559 2803 aaPredicted RBP2.38□□□□□ -2.03
VMP1-208ENST00000588617 FAM223BA6NKX1 122 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 HCG22E2RYF7 251 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 H3BQ15 152 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 K7EIM0 57 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 LY6G6CO95867 125 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 IGLC1P0CG04 106 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 GCHFRP30047 84 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 FAM223AQ8IWN6 122 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 PCNX1Q96RV3 2341 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 SPANXDQ9BXN6 97 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 SMCO4Q9NRQ5 59 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 GNG13Q9P2W3 67 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 NBPF19A0A087WUL8 3843 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 FAM208BQ5VWN6 2430 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 UNC79Q9P2D8 2635 aa2.38□□□□□ -2.03
VMP1-208ENST00000588617 SPTBN1Q01082 2364 aaKnown RBP2.37□□□□□ -2.03
VMP1-208ENST00000588617 USF3Q68DE3 2245 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 TRBV7-1A0A0A6YYK4 115 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 C7orf77A4D0Y5 90 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 SPINK13Q1W4C9 94 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 C10orf113Q5VZT2 155 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 GTF2H5Q6ZYL4 71 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 USMG5Q96IX5 58 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 FAM167A-AS1Q96KT0 104 aa2.37□□□□□ -2.03
VMP1-208ENST00000588617 HELZ2Q9BYK8 2649 aaKnown RBP2.37□□□□□ -2.03
VMP1-208ENST00000588617 SPTAN1Q13813 2472 aaKnown RBP2.36□□□□□ -2.03
VMP1-208ENST00000588617 CREBBPQ92793 2442 aa2.36□□□□□ -2.03
VMP1-208ENST00000588617 MXRA5Q9NR99 2828 aa2.36□□□□□ -2.03
VMP1-208ENST00000588617 TRBV6-1A0A0K0K1D8 114 aa2.36□□□□□ -2.03
VMP1-208ENST00000588617 UBE2L3P68036 154 aaKnown RBP2.36□□□□□ -2.03
VMP1-208ENST00000588617 C14orf144Q96I85 54 aa2.36□□□□□ -2.03
VMP1-208ENST00000588617 PTPN13Q12923 2485 aa2.36□□□□□ -2.03
VMP1-208ENST00000588617 ZNF469Q96JG9 3925 aaPredicted RBP2.36□□□□□ -2.03
VMP1-208ENST00000588617 ZFHX3Q15911 3703 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 ZANQ9Y493 2812 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 H3BUX3 64 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 IGLC2P0DOY2 106 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 FAM103A1Q9BTL3 118 aaKnown RBP2.35□□□□□ -2.03
VMP1-208ENST00000588617 V9GYV3 84 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 OTOGQ6ZRI0 2925 aa2.35□□□□□ -2.03
VMP1-208ENST00000588617 GCN1Q92616 2671 aaKnown RBP2.35□□□□□ -2.03
VMP1-208ENST00000588617 ANK3Q12955 4377 aaKnown RBP2.34□□□□□ -2.03
VMP1-208ENST00000588617 A0A087WTM6 91 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 CLPSL1A2RUU4 121 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 K7EIL1 84 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 NDUFA4O00483 81 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 PRB3Q04118 309 aaPredicted RBP2.34□□□□□ -2.03
VMP1-208ENST00000588617 ADIRFQ15847 76 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 C5orf38Q86SI9 138 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 MYOZ3Q8TDC0 251 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 RABAC1Q9UI14 185 aa2.34□□□□□ -2.03
VMP1-208ENST00000588617 PDZD2O15018 2839 aa2.34□□□□□ -2.04
VMP1-208ENST00000588617 ABCA12Q86UK0 2595 aa2.34□□□□□ -2.04
VMP1-208ENST00000588617 SPG11Q96JI7 2443 aa2.33□□□□□ -2.04
VMP1-208ENST00000588617 G3V318 75 aa2.33□□□□□ -2.04
VMP1-208ENST00000588617 APELAP0DMC3 54 aa2.33□□□□□ -2.04
VMP1-208ENST00000588617 DEFB112Q30KQ8 113 aa2.33□□□□□ -2.04
VMP1-208ENST00000588617 ANKRD17O75179 2603 aaKnown RBP2.33□□□□□ -2.04
VMP1-208ENST00000588617 POLQO75417 2590 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 ITPR2Q14571 2701 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 SMIM27A0A1W2PRY6 76 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 BAGE2Q86Y30 109 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 LENEPQ9Y5L5 61 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 ITPR3Q14573 2671 aa2.32□□□□□ -2.04
VMP1-208ENST00000588617 AKAP6Q13023 2319 aa2.31□□□□□ -2.04
VMP1-208ENST00000588617 TEX15Q9BXT5 2789 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms