RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HAMPP81172 84 aa10.03□□□□□ -0.8
SS18-211ENST00000578954 EPPK1P58107 5090 aaKnown RBP10.03□□□□□ -0.8
SS18-211ENST00000578954 KRTAP4-16G5E9R7 235 aaPredicted RBP10.02□□□□□ -0.81
SS18-211ENST00000578954 ZNF73O43830 326 aaPredicted RBP10.02□□□□□ -0.81
SS18-211ENST00000578954 Q1RN00 199 aa10.02□□□□□ -0.81
SS18-211ENST00000578954 REG3GQ6UW15 175 aa10.01□□□□□ -0.81
SS18-211ENST00000578954 TRBV7-6A0A0J9YX20 115 aa10□□□□□ -0.81
SS18-211ENST00000578954 C9orf118A6NHY6 69 aa10□□□□□ -0.81
SS18-211ENST00000578954 CDK2AP2O75956 126 aa10□□□□□ -0.81
SS18-211ENST00000578954 C6orf99Q4VX62 202 aa10□□□□□ -0.81
SS18-211ENST00000578954 DIRC1Q969H9 104 aa10□□□□□ -0.81
SS18-211ENST00000578954 TRIAP1O43715 76 aa9.99□□□□□ -0.81
SS18-211ENST00000578954 PSORS1C2Q9UIG4 136 aa9.98□□□□□ -0.81
SS18-211ENST00000578954 RYR1P21817 5038 aa9.97□□□□□ -0.81
SS18-211ENST00000578954 BCE1O60756 84 aa9.96□□□□□ -0.82
SS18-211ENST00000578954 ELOF1P60002 83 aaKnown RBP9.96□□□□□ -0.82
SS18-211ENST00000578954 B5MCH6 92 aa9.95□□□□□ -0.82
SS18-211ENST00000578954 H3BUT2 72 aa9.95□□□□□ -0.82
SS18-211ENST00000578954 PSMB2P49721 201 aa9.95□□□□□ -0.82
SS18-211ENST00000578954 NAA38Q9BRA0 125 aaKnown RBP9.95□□□□□ -0.82
SS18-211ENST00000578954 ETDCA0A1B0GVM5 59 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 H0YGX0 51 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 COX6CP09669 75 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 COX7BP24311 80 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 VAMP3Q15836 100 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 LINC00528Q8N1L1 170 aa9.94□□□□□ -0.82
SS18-211ENST00000578954 H0Y9J4 135 aa9.93□□□□□ -0.82
SS18-211ENST00000578954 Q6ZRX8 168 aa9.93□□□□□ -0.82
SS18-211ENST00000578954 KRTAP13-1Q8IUC0 172 aa9.93□□□□□ -0.82
SS18-211ENST00000578954 A0A1W2PPM0 123 aa9.92□□□□□ -0.82
SS18-211ENST00000578954 LYRM7Q5U5X0 104 aa9.92□□□□□ -0.82
SS18-211ENST00000578954 C1orf137Q5JT78 98 aa9.91□□□□□ -0.82
SS18-211ENST00000578954 FAM19A1Q7Z5A9 133 aa9.91□□□□□ -0.82
SS18-211ENST00000578954 INAFM2P0DMQ5 153 aa9.9□□□□□ -0.82
SS18-211ENST00000578954 HSPG2P98160 4391 aa9.9□□□□□ -0.82
SS18-211ENST00000578954 BIRC6Q9NR09 4857 aa9.89□□□□□ -0.83
SS18-211ENST00000578954 SCGB1C2P0DMR2 95 aa9.89□□□□□ -0.83
SS18-211ENST00000578954 LINC00575Q6W349 94 aa9.89□□□□□ -0.83
SS18-211ENST00000578954 FAM218AQ96MZ4 157 aa9.89□□□□□ -0.83
SS18-211ENST00000578954 A0A1B0GX51 115 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 IGLV7-43P04211 117 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 FABP2P12104 132 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 PRLHP81277 87 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 Q9BRP9 147 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 VPS13BQ7Z7G8 4022 aa9.88□□□□□ -0.83
SS18-211ENST00000578954 KIAA1109Q2LD37 5005 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 FAT1Q14517 4588 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 SMR3BP02814 79 aaPredicted RBP9.87□□□□□ -0.83
SS18-211ENST00000578954 UBE2AP49459 152 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 RPL37AP61513 92 aaKnown RBP9.87□□□□□ -0.83
SS18-211ENST00000578954 SMCR5Q8TEV8 140 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 CLEC2BQ92478 149 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 DHRS4-AS1Q9P1J3 65 aa9.87□□□□□ -0.83
SS18-211ENST00000578954 TRBV20-1A0A075B6N2 111 aa9.86□□□□□ -0.83
SS18-211ENST00000578954 LST1O00453 97 aa9.86□□□□□ -0.83
SS18-211ENST00000578954 ZNF861PO60384 105 aa9.86□□□□□ -0.83
SS18-211ENST00000578954 TCL1BO95988 128 aa9.86□□□□□ -0.83
SS18-211ENST00000578954 KRTAP10-4P60372 401 aaPredicted RBP9.86□□□□□ -0.83
SS18-211ENST00000578954 TRACP01848 142 aa9.84□□□□□ -0.83
SS18-211ENST00000578954 hADV29S1A0JD25 119 aa9.83□□□□□ -0.84
SS18-211ENST00000578954 SLC25A20O43772 301 aa9.83□□□□□ -0.84
SS18-211ENST00000578954 ATXN8Q156A1 80 aa9.83□□□□□ -0.84
SS18-211ENST00000578954 SPCS1Q9Y6A9 102 aa9.83□□□□□ -0.84
SS18-211ENST00000578954 ERC2-IT1O76042 136 aa9.81□□□□□ -0.84
SS18-211ENST00000578954 HIGD2AQ9BW72 106 aa9.81□□□□□ -0.84
SS18-211ENST00000578954 K7EP34 96 aa9.8□□□□□ -0.84
SS18-211ENST00000578954 SNCGO76070 127 aa9.8□□□□□ -0.84
SS18-211ENST00000578954 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.8□□□□□ -0.84
SS18-211ENST00000578954 FAM229AH3BQW9 127 aa9.79□□□□□ -0.84
SS18-211ENST00000578954 PLA2G1BP04054 148 aaKnown RBP9.78□□□□□ -0.84
SS18-211ENST00000578954 A0A1B0GV90 55 aa9.77□□□□□ -0.85
SS18-211ENST00000578954 Q6ZQY7 126 aa9.77□□□□□ -0.85
SS18-211ENST00000578954 Q8N1X5 172 aa9.77□□□□□ -0.85
SS18-211ENST00000578954 KRTAP17-1Q9BYP8 105 aa9.77□□□□□ -0.85
SS18-211ENST00000578954 IGLV5-48A0A075B6I7 105 aa9.76□□□□□ -0.85
SS18-211ENST00000578954 DNAL4O96015 105 aa9.76□□□□□ -0.85
SS18-211ENST00000578954 Q5VSD8 79 aa9.76□□□□□ -0.85
SS18-211ENST00000578954 GTF2H5Q6ZYL4 71 aa9.76□□□□□ -0.85
SS18-211ENST00000578954 H3BMG7 143 aa9.75□□□□□ -0.85
SS18-211ENST00000578954 LINC01547P58512 204 aaPredicted RBP9.75□□□□□ -0.85
SS18-211ENST00000578954 OCIAD2Q56VL3 154 aa9.75□□□□□ -0.85
SS18-211ENST00000578954 SPINK6Q6UWN8 80 aa9.75□□□□□ -0.85
SS18-211ENST00000578954 ST20-AS1Q8NBB2 130 aa9.74□□□□□ -0.85
SS18-211ENST00000578954 SPRR1BP22528 89 aa9.73□□□□□ -0.85
SS18-211ENST00000578954 PPDPFLQ8WWR9 84 aa9.73□□□□□ -0.85
SS18-211ENST00000578954 SPRR4Q96PI1 79 aa9.73□□□□□ -0.85
SS18-211ENST00000578954 ZNF706Q9Y5V0 76 aaPredicted RBP9.73□□□□□ -0.85
SS18-211ENST00000578954 H3BQ85 93 aa9.72□□□□□ -0.85
SS18-211ENST00000578954 ORMDL1Q9P0S3 153 aa9.72□□□□□ -0.85
SS18-211ENST00000578954 C9JAW5 83 aa9.71□□□□□ -0.86
SS18-211ENST00000578954 GHRHP01286 108 aa9.71□□□□□ -0.86
SS18-211ENST00000578954 LINC00483Q53H64 154 aa9.71□□□□□ -0.86
SS18-211ENST00000578954 PKHD1L1Q86WI1 4243 aa9.71□□□□□ -0.86
SS18-211ENST00000578954 HERC2O95714 4834 aa9.7□□□□□ -0.86
SS18-211ENST00000578954 Q8N377 158 aa9.7□□□□□ -0.86
SS18-211ENST00000578954 LINC01600Q96MT4 127 aa9.7□□□□□ -0.86
SS18-211ENST00000578954 TEX49A0A1B0GTD5 131 aa9.69□□□□□ -0.86
SS18-211ENST00000578954 PRO0461Q9UI25 63 aa9.69□□□□□ -0.86
SS18-211ENST00000578954 SRRM2Q9UQ35 2752 aaKnown RBP9.69□□□□□ -0.86
SS18-211ENST00000578954 H3BT86 120 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms