RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 ESRGQ1W209 222 aa7.74□□□□□ -1.17
CLN3-238ENST00000569430 NDUFS5O43920 106 aa7.73□□□□□ -1.17
CLN3-238ENST00000569430 X6R8D5 127 aa7.73□□□□□ -1.17
CLN3-238ENST00000569430 CSNK1G2-AS1Q8NCQ2 148 aa7.73□□□□□ -1.17
CLN3-238ENST00000569430 FSHBP01225 129 aa7.72□□□□□ -1.17
CLN3-238ENST00000569430 SMIM29Q86T20 159 aa7.72□□□□□ -1.17
CLN3-238ENST00000569430 UBE2DNLQ8IWF7 75 aa7.72□□□□□ -1.17
CLN3-238ENST00000569430 RETNQ9HD89 108 aa7.72□□□□□ -1.17
CLN3-238ENST00000569430 H0Y9J4 135 aa7.72□□□□□ -1.17
CLN3-238ENST00000569430 TENM1Q9UKZ4 2725 aa7.71□□□□□ -1.17
CLN3-238ENST00000569430 DEFB131BA0A096LNP1 70 aa7.71□□□□□ -1.18
CLN3-238ENST00000569430 OXTP01178 125 aa7.71□□□□□ -1.18
CLN3-238ENST00000569430 BCE1O60756 84 aa7.71□□□□□ -1.18
CLN3-238ENST00000569430 IGHV4-30-4P0DP06 118 aa7.71□□□□□ -1.18
CLN3-238ENST00000569430 LYPD5Q6UWN5 251 aa7.71□□□□□ -1.18
CLN3-238ENST00000569430 CDK2AP2O75956 126 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 KLKP1Q107X0 134 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 MGAM2Q2M2H8 2515 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 OTOGQ6ZRI0 2925 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 IGLV6-57P01721 117 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 LINC00208Q96KT6 92 aa7.7□□□□□ -1.18
CLN3-238ENST00000569430 DHRS4-AS1Q9P1J3 65 aa7.69□□□□□ -1.18
CLN3-238ENST00000569430 INAFM1C9JVW0 142 aa7.69□□□□□ -1.18
CLN3-238ENST00000569430 ELOF1P60002 83 aaKnown RBP7.69□□□□□ -1.18
CLN3-238ENST00000569430 HIVEP1P15822 2718 aa7.68□□□□□ -1.18
CLN3-238ENST00000569430 C11orf45Q8TAV5 145 aa7.68□□□□□ -1.18
CLN3-238ENST00000569430 Q6ZTC4 211 aa7.68□□□□□ -1.18
CLN3-238ENST00000569430 C19orf73Q9NVV2 129 aa7.68□□□□□ -1.18
CLN3-238ENST00000569430 PDZD2O15018 2839 aa7.68□□□□□ -1.18
CLN3-238ENST00000569430 OXLD1Q5BKU9 147 aa7.67□□□□□ -1.18
CLN3-238ENST00000569430 UBE2AP49459 152 aa7.66□□□□□ -1.18
CLN3-238ENST00000569430 LINC00167Q96N53 147 aa7.66□□□□□ -1.18
CLN3-238ENST00000569430 Q5XG85 94 aa7.66□□□□□ -1.18
CLN3-238ENST00000569430 Q8NDZ9 215 aa7.66□□□□□ -1.18
CLN3-238ENST00000569430 CHKB-CPT1BH3BT56 60 aa7.65□□□□□ -1.18
CLN3-238ENST00000569430 C7orf33Q8WU49 177 aa7.65□□□□□ -1.19
CLN3-238ENST00000569430 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.64□□□□□ -1.19
CLN3-238ENST00000569430 NDUFB1O75438 58 aa7.64□□□□□ -1.19
CLN3-238ENST00000569430 NOTCH1P46531 2555 aa7.64□□□□□ -1.19
CLN3-238ENST00000569430 A0A087WSZ3 146 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 VPREB1P12018 145 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 C16orf95Q9H693 158 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 MAST4O15021 2626 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 PMAIP1Q13794 54 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 NBEAL1Q6ZS30 2694 aa7.63□□□□□ -1.19
CLN3-238ENST00000569430 TRBV7-4A0A0J9YYF1 115 aa7.62□□□□□ -1.19
CLN3-238ENST00000569430 ST20-AS1Q8NBB2 130 aa7.62□□□□□ -1.19
CLN3-238ENST00000569430 A6NED7 52 aa7.61□□□□□ -1.19
CLN3-238ENST00000569430 Q6ZRP5 223 aa7.61□□□□□ -1.19
CLN3-238ENST00000569430 STAB1Q9NY15 2570 aa7.61□□□□□ -1.19
CLN3-238ENST00000569430 BAHCC1Q9P281 2608 aa7.6□□□□□ -1.19
CLN3-238ENST00000569430 TRRAPQ9Y4A5 3859 aa7.59□□□□□ -1.19
CLN3-238ENST00000569430 LINC00528Q8N1L1 170 aa7.59□□□□□ -1.19
CLN3-238ENST00000569430 IGKV4-1P06312 121 aa7.59□□□□□ -1.19
CLN3-238ENST00000569430 PRLHP81277 87 aa7.59□□□□□ -1.19
CLN3-238ENST00000569430 FBN1P35555 2871 aaKnown RBP7.59□□□□□ -1.19
CLN3-238ENST00000569430 HCG22E2RYF7 251 aa7.58□□□□□ -1.2
CLN3-238ENST00000569430 PRR15LQ9BU68 103 aa7.58□□□□□ -1.2
CLN3-238ENST00000569430 COL6A5A8TX70 2615 aa7.58□□□□□ -1.2
CLN3-238ENST00000569430 WIPF1O43516 503 aa7.58□□□□□ -1.2
CLN3-238ENST00000569430 A0A0G2JQZ4 141 aa7.57□□□□□ -1.2
CLN3-238ENST00000569430 A0A1W2PNN7 141 aa7.57□□□□□ -1.2
CLN3-238ENST00000569430 Q8NAQ8 132 aa7.57□□□□□ -1.2
CLN3-238ENST00000569430 PKD1L1Q8TDX9 2849 aa7.57□□□□□ -1.2
CLN3-238ENST00000569430 SEC61GP60059 68 aa7.56□□□□□ -1.2
CLN3-238ENST00000569430 GVQW2A0A096LPI5 108 aaPredicted RBP7.56□□□□□ -1.2
CLN3-238ENST00000569430 FP248Q71RG6 208 aaPredicted RBP7.56□□□□□ -1.2
CLN3-238ENST00000569430 MRPL55Q7Z7F7 128 aaKnown RBP7.56□□□□□ -1.2
CLN3-238ENST00000569430 KRTAP1-3Q8IUG1 177 aa7.56□□□□□ -1.2
CLN3-238ENST00000569430 Q8NBF4 154 aa7.56□□□□□ -1.2
CLN3-238ENST00000569430 K7EQZ3 153 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 PCOTHQ58A44 107 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 SERTAD4-AS1Q5TG53 156 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 REG3GQ6UW15 175 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 FAM168BA1KXE4 195 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 LINC00612Q8N6U2 182 aa7.55□□□□□ -1.2
CLN3-238ENST00000569430 CASC2Q6XLA1 102 aa7.54□□□□□ -1.2
CLN3-238ENST00000569430 Q8N377 158 aa7.54□□□□□ -1.2
CLN3-238ENST00000569430 H0Y9P7 68 aa7.54□□□□□ -1.2
CLN3-238ENST00000569430 PRR34Q9NV39 138 aa7.54□□□□□ -1.2
CLN3-238ENST00000569430 NSD1Q96L73 2696 aaPredicted RBP7.54□□□□□ -1.2
CLN3-238ENST00000569430 Q6ZRX8 168 aa7.53□□□□□ -1.2
CLN3-238ENST00000569430 RPL37AP61513 92 aaKnown RBP7.53□□□□□ -1.2
CLN3-238ENST00000569430 C1orf64Q8NEQ6 169 aa7.53□□□□□ -1.2
CLN3-238ENST00000569430 ERC2-IT1O76042 136 aa7.52□□□□□ -1.2
CLN3-238ENST00000569430 B9D2Q9BPU9 175 aa7.52□□□□□ -1.21
CLN3-238ENST00000569430 A8MUN3 132 aa7.52□□□□□ -1.21
CLN3-238ENST00000569430 Q9BRP9 147 aa7.52□□□□□ -1.21
CLN3-238ENST00000569430 FAM229BQ4G0N7 80 aa7.52□□□□□ -1.21
CLN3-238ENST00000569430 LINC00476Q8WZB0 136 aa7.51□□□□□ -1.21
CLN3-238ENST00000569430 IGLV9-49A0A0B4J1Y8 123 aa7.5□□□□□ -1.21
CLN3-238ENST00000569430 OCR1Q9BZK8 76 aa7.5□□□□□ -1.21
CLN3-238ENST00000569430 C15orf56Q8N910 161 aa7.5□□□□□ -1.21
CLN3-238ENST00000569430 A0A1W2PNM2 257 aa7.49□□□□□ -1.21
CLN3-238ENST00000569430 KRTAP10-3P60369 221 aa7.48□□□□□ -1.21
CLN3-238ENST00000569430 SPINK6Q6UWN8 80 aa7.48□□□□□ -1.21
CLN3-238ENST00000569430 EPM2AB3EWF7 344 aa7.48□□□□□ -1.21
CLN3-238ENST00000569430 LINC01556Q5JQF7 62 aa7.48□□□□□ -1.21
CLN3-238ENST00000569430 KCNQ1DNQ9H478 68 aa7.47□□□□□ -1.21
CLN3-238ENST00000569430 hDV103S1A0JD37 113 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms