RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 KRTAP13-3Q3SY46 172 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 ANKRD39Q53RE8 183 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 ARL17AQ8IVW1 177 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 SMCR5Q8TEV8 140 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 LITAFQ99732 161 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 KCNQ1DNQ9H478 68 aa8.45□□□□□ -1.06
CLN3-236ENST00000568558 C20orf202A1L168 122 aa8.44□□□□□ -1.06
CLN3-236ENST00000568558 ETDCA0A1B0GVM5 59 aa8.43□□□□□ -1.06
CLN3-236ENST00000568558 ZNF815PA8K554 130 aa8.43□□□□□ -1.06
CLN3-236ENST00000568558 TRBV10-3A0A0K0K1G6 114 aa8.42□□□□□ -1.06
CLN3-236ENST00000568558 KRTAP9-6A0A140TA67 174 aa8.42□□□□□ -1.06
CLN3-236ENST00000568558 SPINK1P00995 79 aa8.42□□□□□ -1.06
CLN3-236ENST00000568558 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
CLN3-236ENST00000568558 S100A2P29034 98 aa8.41□□□□□ -1.06
CLN3-236ENST00000568558 ASB16-AS1Q495Z4 193 aa8.41□□□□□ -1.06
CLN3-236ENST00000568558 S100A6P06703 90 aa8.4□□□□□ -1.06
CLN3-236ENST00000568558 SNRPEP62304 92 aaKnown RBP8.4□□□□□ -1.06
CLN3-236ENST00000568558 MIEN1Q9BRT3 115 aa8.4□□□□□ -1.06
CLN3-236ENST00000568558 TRBV10-2A0A0K0K1G8 114 aa8.39□□□□□ -1.07
CLN3-236ENST00000568558 TIMM17BO60830 172 aa8.39□□□□□ -1.07
CLN3-236ENST00000568558 SPANXB1Q9NS25 103 aaPredicted RBP8.39□□□□□ -1.07
CLN3-236ENST00000568558 B5MCH6 92 aa8.38□□□□□ -1.07
CLN3-236ENST00000568558 NDUFC2O95298 119 aa8.38□□□□□ -1.07
CLN3-236ENST00000568558 GAGE2AQ6NT46 116 aa8.38□□□□□ -1.07
CLN3-236ENST00000568558 PCP2Q8IVA1 136 aa8.38□□□□□ -1.07
CLN3-236ENST00000568558 LINC00308Q8TCZ7 52 aa8.38□□□□□ -1.07
CLN3-236ENST00000568558 DDTP30046 118 aa8.37□□□□□ -1.07
CLN3-236ENST00000568558 S100A12P80511 92 aa8.37□□□□□ -1.07
CLN3-236ENST00000568558 C5orf52A6NGY3 159 aa8.36□□□□□ -1.07
CLN3-236ENST00000568558 ERC2-IT1O76042 136 aa8.36□□□□□ -1.07
CLN3-236ENST00000568558 IGLV6-57P01721 117 aa8.36□□□□□ -1.07
CLN3-236ENST00000568558 RPS29P62273 56 aaKnown RBP8.36□□□□□ -1.07
CLN3-236ENST00000568558 MOBPQ13875 183 aa8.36□□□□□ -1.07
CLN3-236ENST00000568558 KRTAP4-1Q9BYQ7 146 aa8.36□□□□□ -1.07
CLN3-236ENST00000568558 IGLV9-49A0A0B4J1Y8 123 aa8.35□□□□□ -1.07
CLN3-236ENST00000568558 Q8N377 158 aa8.35□□□□□ -1.07
CLN3-236ENST00000568558 Q9BRP9 147 aa8.35□□□□□ -1.07
CLN3-236ENST00000568558 SEC61BP60468 96 aaKnown RBP8.34□□□□□ -1.07
CLN3-236ENST00000568558 SSBP3-AS1Q7Z2R9 100 aa8.34□□□□□ -1.07
CLN3-236ENST00000568558 AKR1D1P51857 326 aa8.33□□□□□ -1.08
CLN3-236ENST00000568558 LINC01547P58512 204 aaPredicted RBP8.33□□□□□ -1.08
CLN3-236ENST00000568558 S100A7L2Q5SY68 101 aa8.33□□□□□ -1.08
CLN3-236ENST00000568558 SCGB1D4Q6XE38 83 aa8.33□□□□□ -1.08
CLN3-236ENST00000568558 Q6ZRX8 168 aa8.33□□□□□ -1.08
CLN3-236ENST00000568558 SPANXCQ9NY87 97 aa8.33□□□□□ -1.08
CLN3-236ENST00000568558 SPANXDQ9BXN6 97 aa8.32□□□□□ -1.08
CLN3-236ENST00000568558 TRAV23DV6A0A075B6W5 121 aa8.3□□□□□ -1.08
CLN3-236ENST00000568558 SLC25A20O43772 301 aa8.3□□□□□ -1.08
CLN3-236ENST00000568558 SCGB1D1O95968 90 aa8.29□□□□□ -1.08
CLN3-236ENST00000568558 XP32Q5T750 250 aa8.28□□□□□ -1.08
CLN3-236ENST00000568558 OR13C6PQ8NH95 151 aa8.28□□□□□ -1.08
CLN3-236ENST00000568558 HSBP1L1C9JCN9 74 aa8.27□□□□□ -1.09
CLN3-236ENST00000568558 ZNF73O43830 326 aaPredicted RBP8.27□□□□□ -1.09
CLN3-236ENST00000568558 MUSTN1Q8IVN3 82 aa8.27□□□□□ -1.09
CLN3-236ENST00000568558 JOSD1Q15040 202 aaPredicted RBP8.26□□□□□ -1.09
CLN3-236ENST00000568558 C9orf153Q5TBE3 101 aa8.26□□□□□ -1.09
CLN3-236ENST00000568558 IFITM1P13164 125 aa8.25□□□□□ -1.09
CLN3-236ENST00000568558 Q6ZVH6 145 aa8.24□□□□□ -1.09
CLN3-236ENST00000568558 LCE2DQ5TA82 110 aaPredicted RBP8.23□□□□□ -1.09
CLN3-236ENST00000568558 LINC00518Q8N0U6 118 aa8.23□□□□□ -1.09
CLN3-236ENST00000568558 ST20-AS1Q8NBB2 130 aa8.23□□□□□ -1.09
CLN3-236ENST00000568558 COPS9Q8WXC6 57 aa8.21□□□□□ -1.1
CLN3-236ENST00000568558 COX8AP10176 69 aa8.2□□□□□ -1.1
CLN3-236ENST00000568558 C6orf99Q4VX62 202 aa8.2□□□□□ -1.1
CLN3-236ENST00000568558 CBY1Q9Y3M2 126 aa8.2□□□□□ -1.1
CLN3-236ENST00000568558 A6NDN8 102 aa8.19□□□□□ -1.1
CLN3-236ENST00000568558 LCE2CQ5TA81 110 aa8.19□□□□□ -1.1
CLN3-236ENST00000568558 PAM16Q9Y3D7 125 aa8.19□□□□□ -1.1
CLN3-236ENST00000568558 SPRR1BP22528 89 aa8.18□□□□□ -1.1
CLN3-236ENST00000568558 TMA7Q9Y2S6 64 aaKnown RBP8.18□□□□□ -1.1
CLN3-236ENST00000568558 COX7BP24311 80 aa8.17□□□□□ -1.1
CLN3-236ENST00000568558 HINT1P49773 126 aaPredicted RBP8.17□□□□□ -1.1
CLN3-236ENST00000568558 ELOF1P60002 83 aaKnown RBP8.17□□□□□ -1.1
CLN3-236ENST00000568558 C14orf144Q96I85 54 aa8.17□□□□□ -1.1
CLN3-236ENST00000568558 A4D1N5 150 aa8.16□□□□□ -1.1
CLN3-236ENST00000568558 KRTAP19-2Q3LHN2 52 aa8.16□□□□□ -1.1
CLN3-236ENST00000568558 SPATA45Q537H7 98 aa8.16□□□□□ -1.1
CLN3-236ENST00000568558 LIMD2Q9BT23 127 aa8.16□□□□□ -1.1
CLN3-236ENST00000568558 DLEU1O43261 78 aa8.15□□□□□ -1.1
CLN3-236ENST00000568558 SMIM11BQ8TCY0 68 aa8.15□□□□□ -1.1
CLN3-236ENST00000568558 VAMP8Q9BV40 100 aa8.15□□□□□ -1.1
CLN3-236ENST00000568558 TRAV13-2A0A0B4J235 113 aa8.14□□□□□ -1.11
CLN3-236ENST00000568558 SLC25A34Q6PIV7 304 aa8.14□□□□□ -1.11
CLN3-236ENST00000568558 HRCT1Q6UXD1 115 aa8.14□□□□□ -1.11
CLN3-236ENST00000568558 DHRS4-AS1Q9P1J3 65 aa8.14□□□□□ -1.11
CLN3-236ENST00000568558 HIST1H4GQ99525 98 aa8.13□□□□□ -1.11
CLN3-236ENST00000568558 C12orf57Q99622 126 aa8.13□□□□□ -1.11
CLN3-236ENST00000568558 FSIP2Q5CZC0 6907 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 TRBV7-6A0A0J9YX20 115 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 PCOTHQ58A44 107 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 PYY3Q5JQD4 70 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 C2orf91Q6ZV80 131 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 LAMTOR3Q9UHA4 124 aa8.12□□□□□ -1.11
CLN3-236ENST00000568558 IGLV8-61A0A075B6I0 122 aa8.11□□□□□ -1.11
CLN3-236ENST00000568558 C9orf92A6NGG3 77 aa8.11□□□□□ -1.11
CLN3-236ENST00000568558 CRCT1Q9UGL9 99 aa8.11□□□□□ -1.11
CLN3-236ENST00000568558 A0A1B0GWB2 263 aa8.1□□□□□ -1.11
CLN3-236ENST00000568558 MT1HP80294 61 aa8.1□□□□□ -1.11
CLN3-236ENST00000568558 DEFB105AQ8NG35 78 aa8.08□□□□□ -1.12
CLN3-236ENST00000568558 HIGD1BQ9P298 99 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms