RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 JOSD1Q15040 202 aaPredicted RBP9.27□□□□□ -0.93
CLN3-211ENST00000564091 ZNF73O43830 326 aaPredicted RBP9.26□□□□□ -0.93
CLN3-211ENST00000564091 PLNP26678 52 aa9.26□□□□□ -0.93
CLN3-211ENST00000564091 SOSTDC1Q6X4U4 206 aa9.26□□□□□ -0.93
CLN3-211ENST00000564091 LGALS3P17931 250 aaKnown RBP9.25□□□□□ -0.93
CLN3-211ENST00000564091 LINC00310P59036 64 aa9.25□□□□□ -0.93
CLN3-211ENST00000564091 DPM2O94777 84 aa9.24□□□□□ -0.93
CLN3-211ENST00000564091 NMUP48645 174 aa9.24□□□□□ -0.93
CLN3-211ENST00000564091 HERVK_113P61574 105 aa9.24□□□□□ -0.93
CLN3-211ENST00000564091 ADAMTSL4-AS1Q5T5F5 129 aa9.24□□□□□ -0.93
CLN3-211ENST00000564091 SERF1AO75920 110 aa9.23□□□□□ -0.93
CLN3-211ENST00000564091 FABP4P15090 132 aa9.23□□□□□ -0.93
CLN3-211ENST00000564091 CRCT1Q9UGL9 99 aa9.23□□□□□ -0.93
CLN3-211ENST00000564091 TRGC2P03986 189 aa9.22□□□□□ -0.93
CLN3-211ENST00000564091 KRTAP19-2Q3LHN2 52 aa9.22□□□□□ -0.93
CLN3-211ENST00000564091 HRCT1Q6UXD1 115 aa9.22□□□□□ -0.93
CLN3-211ENST00000564091 IGKCP01834 107 aa9.21□□□□□ -0.94
CLN3-211ENST00000564091 PCOTHQ58A44 107 aa9.21□□□□□ -0.94
CLN3-211ENST00000564091 A0A0J9YXY3 114 aa9.2□□□□□ -0.94
CLN3-211ENST00000564091 HSPB8Q9UJY1 196 aa9.2□□□□□ -0.94
CLN3-211ENST00000564091 C9orf92A6NGG3 77 aa9.19□□□□□ -0.94
CLN3-211ENST00000564091 HINT1P49773 126 aaPredicted RBP9.19□□□□□ -0.94
CLN3-211ENST00000564091 IGLV8-61A0A075B6I0 122 aa9.18□□□□□ -0.94
CLN3-211ENST00000564091 C5orf52A6NGY3 159 aa9.18□□□□□ -0.94
CLN3-211ENST00000564091 MT1HP80294 61 aa9.18□□□□□ -0.94
CLN3-211ENST00000564091 SPRR1BP22528 89 aa9.17□□□□□ -0.94
CLN3-211ENST00000564091 OR13C6PQ8NH95 151 aa9.16□□□□□ -0.94
CLN3-211ENST00000564091 LIMD2Q9BT23 127 aa9.16□□□□□ -0.94
CLN3-211ENST00000564091 E9PLD3 99 aa9.14□□□□□ -0.95
CLN3-211ENST00000564091 LINC00308Q8TCZ7 52 aa9.14□□□□□ -0.95
CLN3-211ENST00000564091 LAMTOR3Q9UHA4 124 aa9.14□□□□□ -0.95
CLN3-211ENST00000564091 CBY1Q9Y3M2 126 aa9.14□□□□□ -0.95
CLN3-211ENST00000564091 SLC25A34Q6PIV7 304 aa9.13□□□□□ -0.95
CLN3-211ENST00000564091 LITAFQ99732 161 aa9.13□□□□□ -0.95
CLN3-211ENST00000564091 SPANXCQ9NY87 97 aa9.13□□□□□ -0.95
CLN3-211ENST00000564091 DHRS4-AS1Q9P1J3 65 aa9.13□□□□□ -0.95
CLN3-211ENST00000564091 Q1RN00 199 aa9.1□□□□□ -0.95
CLN3-211ENST00000564091 DEFB105AQ8NG35 78 aa9.1□□□□□ -0.95
CLN3-211ENST00000564091 H7C2G1 150 aa9.09□□□□□ -0.95
CLN3-211ENST00000564091 CFC1BP0CG36 223 aa9.08□□□□□ -0.96
CLN3-211ENST00000564091 COX7BP24311 80 aa9.08□□□□□ -0.96
CLN3-211ENST00000564091 TAL2Q16559 108 aa9.08□□□□□ -0.96
CLN3-211ENST00000564091 C6orf99Q4VX62 202 aa9.08□□□□□ -0.96
CLN3-211ENST00000564091 SPANXDQ9BXN6 97 aa9.08□□□□□ -0.96
CLN3-211ENST00000564091 ELOF1P60002 83 aaKnown RBP9.07□□□□□ -0.96
CLN3-211ENST00000564091 TIMM17BO60830 172 aa9.06□□□□□ -0.96
CLN3-211ENST00000564091 CD164Q04900 197 aa9.06□□□□□ -0.96
CLN3-211ENST00000564091 PRO1933Q9H354 126 aa9.06□□□□□ -0.96
CLN3-211ENST00000564091 LORP23490 312 aaPredicted RBP9.05□□□□□ -0.96
CLN3-211ENST00000564091 TTTY13Q9BZ97 58 aa9.05□□□□□ -0.96
CLN3-211ENST00000564091 A0A0G2JQZ4 141 aa9.04□□□□□ -0.96
CLN3-211ENST00000564091 SYS1-DBNDD2H3BUS1 97 aa9.04□□□□□ -0.96
CLN3-211ENST00000564091 KRTAP10-6P60371 365 aaPredicted RBP9.04□□□□□ -0.96
CLN3-211ENST00000564091 TEX49A0A1B0GTD5 131 aa9.03□□□□□ -0.96
CLN3-211ENST00000564091 ZNF815PA8K554 130 aa9.03□□□□□ -0.96
CLN3-211ENST00000564091 COLCA2A8K830 154 aa9.03□□□□□ -0.96
CLN3-211ENST00000564091 C1orf195Q5TG92 126 aa9.03□□□□□ -0.96
CLN3-211ENST00000564091 SMIM29Q86T20 159 aa9.03□□□□□ -0.96
CLN3-211ENST00000564091 FLGP20930 4061 aaPredicted RBP9.02□□□□□ -0.96
CLN3-211ENST00000564091 LINC00518Q8N0U6 118 aa9.02□□□□□ -0.97
CLN3-211ENST00000564091 AKR1D1P51857 326 aa9.01□□□□□ -0.97
CLN3-211ENST00000564091 Q5XG85 94 aa9□□□□□ -0.97
CLN3-211ENST00000564091 M0R2T5 61 aa8.99□□□□□ -0.97
CLN3-211ENST00000564091 LINC01545Q5VT33 79 aa8.99□□□□□ -0.97
CLN3-211ENST00000564091 RPL37P61927 97 aaKnown RBP8.98□□□□□ -0.97
CLN3-211ENST00000564091 TRBV7-6A0A0J9YX20 115 aa8.96□□□□□ -0.98
CLN3-211ENST00000564091 PET117Q6UWS5 81 aa8.96□□□□□ -0.98
CLN3-211ENST00000564091 COX6B2Q6YFQ2 88 aa8.96□□□□□ -0.98
CLN3-211ENST00000564091 IGLV5-48A0A075B6I7 105 aa8.95□□□□□ -0.98
CLN3-211ENST00000564091 A0A1B0GWB2 263 aa8.95□□□□□ -0.98
CLN3-211ENST00000564091 A6NDN8 102 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BKO60814 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BJP06899 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BOP23527 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BBP33778 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BDP58876 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BCP62807 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST2H2BEQ16778 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BHQ93079 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BNQ99877 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 HIST1H2BMQ99879 126 aa8.94□□□□□ -0.98
CLN3-211ENST00000564091 SCGB1D4Q6XE38 83 aa8.93□□□□□ -0.98
CLN3-211ENST00000564091 SLC7A5P1Q8MH63 180 aa8.93□□□□□ -0.98
CLN3-211ENST00000564091 C3orf79P0CE67 100 aa8.91□□□□□ -0.98
CLN3-211ENST00000564091 TCL1BO95988 128 aa8.89□□□□□ -0.99
CLN3-211ENST00000564091 MUSTN1Q8IVN3 82 aa8.89□□□□□ -0.99
CLN3-211ENST00000564091 IFITM1P13164 125 aa8.88□□□□□ -0.99
CLN3-211ENST00000564091 ANKRD39Q53RE8 183 aa8.88□□□□□ -0.99
CLN3-211ENST00000564091 COPS9Q8WXC6 57 aa8.88□□□□□ -0.99
CLN3-211ENST00000564091 A4D1N5 150 aa8.87□□□□□ -0.99
CLN3-211ENST00000564091 KRTDAPP60985 99 aa8.87□□□□□ -0.99
CLN3-211ENST00000564091 SMIM11BQ8TCY0 68 aa8.86□□□□□ -0.99
CLN3-211ENST00000564091 NHP2Q9NX24 153 aaKnown RBP8.85□□□□□ -0.99
CLN3-211ENST00000564091 Q6ZVH6 145 aa8.84□□□□□ -0.99
CLN3-211ENST00000564091 PCP2Q8IVA1 136 aa8.84□□□□□ -0.99
CLN3-211ENST00000564091 ATOH7Q8N100 152 aa8.83□□□□□ -1
CLN3-211ENST00000564091 TRAV13-2A0A0B4J235 113 aa8.82□□□□□ -1
CLN3-211ENST00000564091 F8WEM9 126 aa8.82□□□□□ -1
CLN3-211ENST00000564091 Q6Q795 121 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms