RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TRBV10-3A0A0K0K1G6 114 aa9.81□□□□□ -0.84
CLK3-210ENST00000563112 ARL17AQ8IVW1 177 aa9.81□□□□□ -0.84
CLK3-210ENST00000563112 SPRR4Q96PI1 79 aa9.81□□□□□ -0.84
CLK3-210ENST00000563112 SPRR1AP35321 89 aa9.8□□□□□ -0.84
CLK3-210ENST00000563112 TRBV10-2A0A0K0K1G8 114 aa9.79□□□□□ -0.84
CLK3-210ENST00000563112 C14orf144Q96I85 54 aa9.79□□□□□ -0.84
CLK3-210ENST00000563112 C3orf22Q8N5N4 141 aa9.78□□□□□ -0.84
CLK3-210ENST00000563112 SMCR5Q8TEV8 140 aa9.78□□□□□ -0.84
CLK3-210ENST00000563112 KRTAP4-16G5E9R7 235 aaPredicted RBP9.77□□□□□ -0.85
CLK3-210ENST00000563112 SPANXB1Q9NS25 103 aaPredicted RBP9.77□□□□□ -0.85
CLK3-210ENST00000563112 E9PLD3 99 aa9.76□□□□□ -0.85
CLK3-210ENST00000563112 S100A7L2Q5SY68 101 aa9.76□□□□□ -0.85
CLK3-210ENST00000563112 SPAG11AQ6PDA7 123 aa9.76□□□□□ -0.85
CLK3-210ENST00000563112 NDUFC2O95298 119 aa9.75□□□□□ -0.85
CLK3-210ENST00000563112 C4orf48Q5BLP8 95 aa9.75□□□□□ -0.85
CLK3-210ENST00000563112 LINC01545Q5VT33 79 aa9.75□□□□□ -0.85
CLK3-210ENST00000563112 RETNLBQ9BQ08 111 aa9.75□□□□□ -0.85
CLK3-210ENST00000563112 A0A0J9YXY3 114 aa9.74□□□□□ -0.85
CLK3-210ENST00000563112 B5MCH6 92 aa9.73□□□□□ -0.85
CLK3-210ENST00000563112 PPDPFQ9H3Y8 114 aa9.73□□□□□ -0.85
CLK3-210ENST00000563112 NPC2P61916 151 aa9.72□□□□□ -0.85
CLK3-210ENST00000563112 SLC25A34Q6PIV7 304 aa9.72□□□□□ -0.85
CLK3-210ENST00000563112 ADAMTSL4-AS1Q5T5F5 129 aa9.71□□□□□ -0.86
CLK3-210ENST00000563112 IGLV6-57P01721 117 aa9.7□□□□□ -0.86
CLK3-210ENST00000563112 COL5A1-AS1Q5SY13 56 aa9.7□□□□□ -0.86
CLK3-210ENST00000563112 GAGE2AQ6NT46 116 aa9.7□□□□□ -0.86
CLK3-210ENST00000563112 CBY1Q9Y3M2 126 aa9.7□□□□□ -0.86
CLK3-210ENST00000563112 IGLV7-46A0A075B6I9 117 aa9.69□□□□□ -0.86
CLK3-210ENST00000563112 TRAV23DV6A0A075B6W5 121 aa9.69□□□□□ -0.86
CLK3-210ENST00000563112 SOSTDC1Q6X4U4 206 aa9.69□□□□□ -0.86
CLK3-210ENST00000563112 Q6ZRX8 168 aa9.69□□□□□ -0.86
CLK3-210ENST00000563112 Q8NBF4 154 aa9.69□□□□□ -0.86
CLK3-210ENST00000563112 LINC00483Q53H64 154 aa9.68□□□□□ -0.86
CLK3-210ENST00000563112 ATOH7Q8N100 152 aa9.68□□□□□ -0.86
CLK3-210ENST00000563112 ERC2-IT1O76042 136 aa9.67□□□□□ -0.86
CLK3-210ENST00000563112 ZNF73O43830 326 aaPredicted RBP9.66□□□□□ -0.86
CLK3-210ENST00000563112 TIMM17BO60830 172 aa9.66□□□□□ -0.86
CLK3-210ENST00000563112 HINT1P49773 126 aaPredicted RBP9.66□□□□□ -0.86
CLK3-210ENST00000563112 Q9BRP9 147 aa9.66□□□□□ -0.86
CLK3-210ENST00000563112 CDIP1Q9H305 208 aa9.66□□□□□ -0.86
CLK3-210ENST00000563112 ZNF815PA8K554 130 aa9.65□□□□□ -0.86
CLK3-210ENST00000563112 EIF4EBP3O60516 100 aaPredicted RBP9.65□□□□□ -0.86
CLK3-210ENST00000563112 TPRXLQ17RH7 258 aa9.65□□□□□ -0.86
CLK3-210ENST00000563112 LINC00308Q8TCZ7 52 aa9.65□□□□□ -0.86
CLK3-210ENST00000563112 SNHG12Q9BXW3 62 aa9.65□□□□□ -0.86
CLK3-210ENST00000563112 SPANXCQ9NY87 97 aa9.65□□□□□ -0.86
CLK3-210ENST00000563112 IGLV9-49A0A0B4J1Y8 123 aa9.64□□□□□ -0.87
CLK3-210ENST00000563112 DLEU1O43261 78 aa9.64□□□□□ -0.87
CLK3-210ENST00000563112 SPINK1P00995 79 aa9.64□□□□□ -0.87
CLK3-210ENST00000563112 COX8AP10176 69 aa9.64□□□□□ -0.87
CLK3-210ENST00000563112 OR13C6PQ8NH95 151 aa9.64□□□□□ -0.87
CLK3-210ENST00000563112 SSBP3-AS1Q7Z2R9 100 aa9.63□□□□□ -0.87
CLK3-210ENST00000563112 LITAFQ99732 161 aa9.63□□□□□ -0.87
CLK3-210ENST00000563112 A0A0U1RQV1 116 aa9.62□□□□□ -0.87
CLK3-210ENST00000563112 MOBPQ13875 183 aa9.62□□□□□ -0.87
CLK3-210ENST00000563112 FP248Q71RG6 208 aaPredicted RBP9.62□□□□□ -0.87
CLK3-210ENST00000563112 BATFQ16520 125 aa9.61□□□□□ -0.87
CLK3-210ENST00000563112 SPANXDQ9BXN6 97 aa9.59□□□□□ -0.87
CLK3-210ENST00000563112 TTTY13Q9BZ97 58 aa9.59□□□□□ -0.87
CLK3-210ENST00000563112 MUC2Q02817 5179 aa9.59□□□□□ -0.87
CLK3-210ENST00000563112 SCGB1D4Q6XE38 83 aa9.58□□□□□ -0.88
CLK3-210ENST00000563112 A6NDN8 102 aa9.57□□□□□ -0.88
CLK3-210ENST00000563112 C9orf153Q5TBE3 101 aa9.57□□□□□ -0.88
CLK3-210ENST00000563112 COPS9Q8WXC6 57 aa9.57□□□□□ -0.88
CLK3-210ENST00000563112 A0A1B0GV90 55 aa9.56□□□□□ -0.88
CLK3-210ENST00000563112 RPS29P62273 56 aaKnown RBP9.56□□□□□ -0.88
CLK3-210ENST00000563112 DHRS4-AS1Q9P1J3 65 aa9.56□□□□□ -0.88
CLK3-210ENST00000563112 HSD52Q0P140 79 aa9.55□□□□□ -0.88
CLK3-210ENST00000563112 ST20-AS1Q8NBB2 130 aa9.55□□□□□ -0.88
CLK3-210ENST00000563112 HIGD1BQ9P298 99 aa9.55□□□□□ -0.88
CLK3-210ENST00000563112 COX7BP24311 80 aa9.53□□□□□ -0.88
CLK3-210ENST00000563112 ANKRD39Q53RE8 183 aa9.53□□□□□ -0.88
CLK3-210ENST00000563112 SLC25A20O43772 301 aa9.52□□□□□ -0.89
CLK3-210ENST00000563112 IFITM1P13164 125 aa9.52□□□□□ -0.89
CLK3-210ENST00000563112 TAL2Q16559 108 aa9.52□□□□□ -0.89
CLK3-210ENST00000563112 C6orf99Q4VX62 202 aa9.51□□□□□ -0.89
CLK3-210ENST00000563112 Q6ZVH6 145 aa9.51□□□□□ -0.89
CLK3-210ENST00000563112 MUC17Q685J3 4493 aa9.5□□□□□ -0.89
CLK3-210ENST00000563112 ELOF1P60002 83 aaKnown RBP9.5□□□□□ -0.89
CLK3-210ENST00000563112 BVES-AS1Q5T3Y7 98 aa9.5□□□□□ -0.89
CLK3-210ENST00000563112 Q8N377 158 aa9.5□□□□□ -0.89
CLK3-210ENST00000563112 SPRR1BP22528 89 aa9.49□□□□□ -0.89
CLK3-210ENST00000563112 KRTAP13-3Q3SY46 172 aa9.49□□□□□ -0.89
CLK3-210ENST00000563112 LAMTOR3Q9UHA4 124 aa9.49□□□□□ -0.89
CLK3-210ENST00000563112 TRBV7-6A0A0J9YX20 115 aa9.47□□□□□ -0.89
CLK3-210ENST00000563112 PCP2Q8IVA1 136 aa9.47□□□□□ -0.89
CLK3-210ENST00000563112 TMEM238LA0A1B0GVL6 79 aa9.46□□□□□ -0.9
CLK3-210ENST00000563112 A6NJY4 79 aa9.46□□□□□ -0.9
CLK3-210ENST00000563112 C2orf91Q6ZV80 131 aa9.46□□□□□ -0.9
CLK3-210ENST00000563112 MUSTN1Q8IVN3 82 aa9.46□□□□□ -0.9
CLK3-210ENST00000563112 A0A1B0GWB2 263 aa9.44□□□□□ -0.9
CLK3-210ENST00000563112 DEFB105AQ8NG35 78 aa9.43□□□□□ -0.9
CLK3-210ENST00000563112 TRAV13-2A0A0B4J235 113 aa9.42□□□□□ -0.9
CLK3-210ENST00000563112 TEX49A0A1B0GTD5 131 aa9.42□□□□□ -0.9
CLK3-210ENST00000563112 VAMP3Q15836 100 aa9.42□□□□□ -0.9
CLK3-210ENST00000563112 LIMD2Q9BT23 127 aa9.42□□□□□ -0.9
CLK3-210ENST00000563112 FAT4Q6V0I7 4981 aa9.42□□□□□ -0.9
CLK3-210ENST00000563112 A4D1N5 150 aa9.41□□□□□ -0.9
CLK3-210ENST00000563112 GTF2H5Q6ZYL4 71 aa9.41□□□□□ -0.9
CLK3-210ENST00000563112 HIST1H4GQ99525 98 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms