RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IGLV7-43P04211 117 aa5.7□□□□□ -1.5
LDLR-210ENST00000559340 RPL28P46779 137 aaKnown RBP5.7□□□□□ -1.5
LDLR-210ENST00000559340 UBE2AP49459 152 aa5.7□□□□□ -1.5
LDLR-210ENST00000559340 CTAG1AP78358 180 aa5.7□□□□□ -1.5
LDLR-210ENST00000559340 LINC00337Q8N6G1 96 aa5.7□□□□□ -1.5
LDLR-210ENST00000559340 A0A0B4J2C4 111 aa5.69□□□□□ -1.5
LDLR-210ENST00000559340 M0R143 59 aa5.69□□□□□ -1.5
LDLR-210ENST00000559340 FAM19A1Q7Z5A9 133 aa5.69□□□□□ -1.5
LDLR-210ENST00000559340 H0Y9J4 135 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 ZNF73O43830 326 aaPredicted RBP5.68□□□□□ -1.5
LDLR-210ENST00000559340 ZNF861PO60384 105 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 SPRR1AP35321 89 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 VAMP3Q15836 100 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 SPINK6Q6UWN8 80 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 KRTAP11-1Q8IUC1 163 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 DIRC1Q969H9 104 aa5.68□□□□□ -1.5
LDLR-210ENST00000559340 CFC1BP0CG36 223 aa5.67□□□□□ -1.5
LDLR-210ENST00000559340 CFC1P0CG37 223 aa5.67□□□□□ -1.5
LDLR-210ENST00000559340 INAFM2P0DMQ5 153 aa5.67□□□□□ -1.5
LDLR-210ENST00000559340 PRO1854Q9UHT4 67 aa5.67□□□□□ -1.5
LDLR-210ENST00000559340 TRBV7-6A0A0J9YX20 115 aa5.66□□□□□ -1.5
LDLR-210ENST00000559340 RPL13AP40429 203 aaKnown RBP5.66□□□□□ -1.5
LDLR-210ENST00000559340 FXYD2P54710 66 aa5.66□□□□□ -1.5
LDLR-210ENST00000559340 VPS13BQ7Z7G8 4022 aa5.65□□□□□ -1.5
LDLR-210ENST00000559340 A0A1B0GWB2 263 aa5.65□□□□□ -1.5
LDLR-210ENST00000559340 SNCGO76070 127 aa5.65□□□□□ -1.5
LDLR-210ENST00000559340 KRTAP10-4P60372 401 aaPredicted RBP5.65□□□□□ -1.5
LDLR-210ENST00000559340 C6orf99Q4VX62 202 aa5.65□□□□□ -1.5
LDLR-210ENST00000559340 BVES-AS1Q5T3Y7 98 aa5.65□□□□□ -1.5
LDLR-210ENST00000559340 NHP2Q9NX24 153 aaKnown RBP5.65□□□□□ -1.5
LDLR-210ENST00000559340 DMBT1Q9UGM3 2413 aaPredicted RBP5.64□□□□□ -1.51
LDLR-210ENST00000559340 B5MCH6 92 aa5.64□□□□□ -1.51
LDLR-210ENST00000559340 KRTAP4-16G5E9R7 235 aaPredicted RBP5.64□□□□□ -1.51
LDLR-210ENST00000559340 COX7BP24311 80 aa5.64□□□□□ -1.51
LDLR-210ENST00000559340 Q1RN00 199 aa5.64□□□□□ -1.51
LDLR-210ENST00000559340 SMIM11BQ8TCY0 68 aa5.64□□□□□ -1.51
LDLR-210ENST00000559340 FAT1Q14517 4588 aa5.64□□□□□ -1.51
LDLR-210ENST00000559340 H7C2G1 150 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 SLC25A20O43772 301 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 PRLHP81277 87 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 Q6ZRX8 168 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 HIGD2AQ9BW72 106 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 DHRS4-AS1Q9P1J3 65 aa5.63□□□□□ -1.51
LDLR-210ENST00000559340 ZNF706Q9Y5V0 76 aaPredicted RBP5.63□□□□□ -1.51
LDLR-210ENST00000559340 H0YGX0 51 aa5.62□□□□□ -1.51
LDLR-210ENST00000559340 COX6CP09669 75 aa5.62□□□□□ -1.51
LDLR-210ENST00000559340 ELOF1P60002 83 aaKnown RBP5.62□□□□□ -1.51
LDLR-210ENST00000559340 KRTAP13-1Q8IUC0 172 aa5.62□□□□□ -1.51
LDLR-210ENST00000559340 SMCR5Q8TEV8 140 aa5.62□□□□□ -1.51
LDLR-210ENST00000559340 FLG2Q5D862 2391 aaPredicted RBP5.6□□□□□ -1.51
LDLR-210ENST00000559340 SRRM2Q9UQ35 2752 aaKnown RBP5.6□□□□□ -1.51
LDLR-210ENST00000559340 LCE2BO14633 110 aa5.6□□□□□ -1.51
LDLR-210ENST00000559340 PSMB2P49721 201 aa5.6□□□□□ -1.51
LDLR-210ENST00000559340 HERC1Q15751 4861 aa5.6□□□□□ -1.51
LDLR-210ENST00000559340 OXTP01178 125 aa5.58□□□□□ -1.52
LDLR-210ENST00000559340 GHRHP01286 108 aa5.58□□□□□ -1.52
LDLR-210ENST00000559340 BATFQ16520 125 aa5.58□□□□□ -1.52
LDLR-210ENST00000559340 A0A1B0GX51 115 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 hADV29S1A0JD25 119 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 K7ERJ3 54 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 SCGB1C2P0DMR2 95 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 LINC00575Q6W349 94 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 Q9BRP9 147 aa5.57□□□□□ -1.52
LDLR-210ENST00000559340 PKHD1L1Q86WI1 4243 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 J3QL48 77 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 TSPAN13O95857 204 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 FAM229BQ4G0N7 80 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 LYRM7Q5U5X0 104 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 SPRR4Q96PI1 79 aa5.56□□□□□ -1.52
LDLR-210ENST00000559340 PCP4L1A6NKN8 68 aa5.55□□□□□ -1.52
LDLR-210ENST00000559340 H3BQ85 93 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 TRIAP1O43715 76 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 ERC2-IT1O76042 136 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 CRYGAP11844 174 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 OCIAD2Q56VL3 154 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 GAGE2AQ6NT46 116 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.54□□□□□ -1.52
LDLR-210ENST00000559340 LINC01600Q96MT4 127 aa5.54□□□□□ -1.52
LDLR-210ENST00000559340 TEX49A0A1B0GTD5 131 aa5.53□□□□□ -1.52
LDLR-210ENST00000559340 KRTAP29-1A8MX34 341 aaPredicted RBP5.53□□□□□ -1.52
LDLR-210ENST00000559340 DNAL4O96015 105 aa5.53□□□□□ -1.52
LDLR-210ENST00000559340 SVIPQ8NHG7 77 aa5.53□□□□□ -1.52
LDLR-210ENST00000559340 KRTAP1-4P0C5Y4 121 aa5.52□□□□□ -1.53
LDLR-210ENST00000559340 LINC00483Q53H64 154 aa5.52□□□□□ -1.53
LDLR-210ENST00000559340 COL5A1-AS1Q5SY13 56 aa5.52□□□□□ -1.53
LDLR-210ENST00000559340 PPDPFLQ8WWR9 84 aa5.52□□□□□ -1.53
LDLR-210ENST00000559340 LAMTOR3Q9UHA4 124 aa5.52□□□□□ -1.53
LDLR-210ENST00000559340 C9orf118A6NHY6 69 aa5.51□□□□□ -1.53
LDLR-210ENST00000559340 SPRR1BP22528 89 aa5.51□□□□□ -1.53
LDLR-210ENST00000559340 DEFB105AQ8NG35 78 aa5.51□□□□□ -1.53
LDLR-210ENST00000559340 SNHG12Q9BXW3 62 aa5.51□□□□□ -1.53
LDLR-210ENST00000559340 IGLV5-48A0A075B6I7 105 aa5.5□□□□□ -1.53
LDLR-210ENST00000559340 Q6ZQY7 126 aa5.5□□□□□ -1.53
LDLR-210ENST00000559340 ST20-AS1Q8NBB2 130 aa5.5□□□□□ -1.53
LDLR-210ENST00000559340 MYCBP2O75592 4640 aa5.5□□□□□ -1.53
LDLR-210ENST00000559340 TRBV20-1A0A075B6N2 111 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 H3BUT2 72 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 TRACP01848 142 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 ATXN8Q156A1 80 aa5.49□□□□□ -1.53
LDLR-210ENST00000559340 PRR26Q8N8Z3 221 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms