RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MIF4GDA9UHW6 222 aaKnown RBP0.69□□□□□ -2.3
SCFD1-221ENST00000556534 C10orf142B7Z368 130 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 HCG22E2RYF7 251 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 AKAIN1P0CW23 69 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 ASIPP42127 132 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 Q56UQ5 140 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 C12orf73Q69YU5 71 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 LINC00312Q9Y6C7 94 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 DSTQ03001 7570 aaKnown RBP0.69□□□□□ -2.3
SCFD1-221ENST00000556534 DOCK11Q5JSL3 2073 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 FAT1Q14517 4588 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 KIF20BQ96Q89 1820 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 USH2AO75445 5202 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 GVQW2A0A096LPI5 108 aaPredicted RBP0.68□□□□□ -2.3
SCFD1-221ENST00000556534 F2Z2F3 143 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 APOC4-APOC2K7ER74 178 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 KRTAP2-3P0C7H8 128 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 FDCSPQ8NFU4 85 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 KRTAP2-4Q9BYR9 128 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 DNAH11Q96DT5 4516 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 PKHD1L1Q86WI1 4243 aa0.68□□□□□ -2.3
SCFD1-221ENST00000556534 TRGV1A0A0A0MS02 117 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 TRAV13-2A0A0B4J235 113 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 SIX6O95475 246 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 CATR1Q13166 79 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 SPATA8Q6RVD6 105 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 MUC12Q9UKN1 5478 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 VPS13DQ5THJ4 4388 aa0.67□□□□□ -2.3
SCFD1-221ENST00000556534 STATHP02808 62 aa0.66□□□□□ -2.3
SCFD1-221ENST00000556534 DEFB121Q5J5C9 76 aa0.66□□□□□ -2.3
SCFD1-221ENST00000556534 BPESC1Q9GZL8 116 aa0.66□□□□□ -2.3
SCFD1-221ENST00000556534 FAT3Q8TDW7 4589 aa0.66□□□□□ -2.3
SCFD1-221ENST00000556534 OOSP1A8MZH6 123 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 APOC2P02655 101 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 SPINK7P58062 85 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 SMIM11BQ8TCY0 68 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 WFDC6Q9BQY6 131 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 KRTAP2-1Q9BYU5 128 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 TCHHQ07283 1943 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 PLIN4Q96Q06 1357 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 LRP1BQ9NZR2 4599 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 DNAH5Q8TE73 4624 aa0.65□□□□□ -2.31
SCFD1-221ENST00000556534 MDN1Q9NU22 5596 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 DNAH17Q9UFH2 4485 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 F6UZH7 168 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 CORTO00230 105 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 TNFP01375 233 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 ACYP2P14621 99 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 UBA52P62987 128 aaKnown RBP0.64□□□□□ -2.31
SCFD1-221ENST00000556534 MRPL54Q6P161 138 aaKnown RBP0.64□□□□□ -2.31
SCFD1-221ENST00000556534 TMEM203Q969S6 136 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 TNXBP22105 4242 aa0.64□□□□□ -2.31
SCFD1-221ENST00000556534 SNAPC5O75971 98 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 IFNGP01579 166 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 HMGA1P17096 107 aaKnown RBP0.63□□□□□ -2.31
SCFD1-221ENST00000556534 DEFB133Q30KQ1 61 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 PPP3R2Q96LZ3 170 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 PRR15LQ9BU68 103 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 GNG8Q9UK08 70 aa0.63□□□□□ -2.31
SCFD1-221ENST00000556534 PIGBOS1A0A0B4J2F0 54 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 SPTY2D1-AS1A0A0U1RR47 76 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 TPPP2P59282 170 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 C9orf153Q5TBE3 101 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 VMO1Q7Z5L0 202 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 SPANXDQ9BXN6 97 aa0.62□□□□□ -2.31
SCFD1-221ENST00000556534 TRAV1-2A0A0B4J238 106 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 TMEM14DPA8MWL7 114 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 DEFB108AA8MXU0 73 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 GNG4P50150 75 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 CCL18P55774 89 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 C10orf128Q5T292 105 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 Q5VSD8 79 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 Q6ZRX8 168 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 C5orf38Q86SI9 138 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 C8orf59Q8N0T1 100 aaPredicted RBP0.61□□□□□ -2.31
SCFD1-221ENST00000556534 WFDC9Q8NEX5 89 aa0.61□□□□□ -2.31
SCFD1-221ENST00000556534 LPAP08519 4548 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 G3V318 75 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 SMIM6P0DI80 62 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 S100A1P23297 94 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 TTC9CQ8N5M4 171 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 TSLPQ969D9 159 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 AQP10Q96PS8 301 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 PLAC8Q9NZF1 115 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 LINC00474Q9P2X8 69 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 IER3IP1Q9Y5U9 82 aa0.6□□□□□ -2.31
SCFD1-221ENST00000556534 TNCP24821 2201 aa0.59□□□□□ -2.31
SCFD1-221ENST00000556534 PPP1R17O96001 155 aa0.59□□□□□ -2.31
SCFD1-221ENST00000556534 PPP3R1P63098 170 aa0.59□□□□□ -2.31
SCFD1-221ENST00000556534 COMMD6Q7Z4G1 85 aa0.59□□□□□ -2.31
SCFD1-221ENST00000556534 SCP2D1Q9UJQ7 156 aa0.59□□□□□ -2.31
SCFD1-221ENST00000556534 PRH1P02810 166 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 MT1HL1P0DM35 61 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 Q5VV11 94 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 BAGE3Q86Y29 109 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 DEFB104AQ8WTQ1 72 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 CYP4F30PQ9H0H9 118 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 LENEPQ9Y5L5 61 aa0.58□□□□□ -2.32
SCFD1-221ENST00000556534 MUC5ACP98088 5654 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 161.6 ms