RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 OCR1Q9BZK8 76 aa11.48□□□□□ -0.57
SYNE3-202ENST00000553340 HIVEP1P15822 2718 aa11.47□□□□□ -0.57
SYNE3-202ENST00000553340 ESRGQ1W209 222 aa11.47□□□□□ -0.57
SYNE3-202ENST00000553340 Q8N377 158 aa11.47□□□□□ -0.57
SYNE3-202ENST00000553340 HELZ2Q9BYK8 2649 aaKnown RBP11.47□□□□□ -0.57
SYNE3-202ENST00000553340 UNC79Q9P2D8 2635 aa11.47□□□□□ -0.57
SYNE3-202ENST00000553340 Q6ZTC4 211 aa11.47□□□□□ -0.57
SYNE3-202ENST00000553340 IGLV5-48A0A075B6I7 105 aa11.46□□□□□ -0.57
SYNE3-202ENST00000553340 FP248Q71RG6 208 aaPredicted RBP11.46□□□□□ -0.57
SYNE3-202ENST00000553340 INAFM1C9JVW0 142 aa11.46□□□□□ -0.58
SYNE3-202ENST00000553340 C7orf33Q8WU49 177 aa11.46□□□□□ -0.58
SYNE3-202ENST00000553340 TENM1Q9UKZ4 2725 aa11.45□□□□□ -0.58
SYNE3-202ENST00000553340 LINC01556Q5JQF7 62 aa11.44□□□□□ -0.58
SYNE3-202ENST00000553340 SERTAD4-AS1Q5TG53 156 aa11.44□□□□□ -0.58
SYNE3-202ENST00000553340 RETNQ9HD89 108 aa11.44□□□□□ -0.58
SYNE3-202ENST00000553340 FASNP49327 2511 aaKnown RBP11.44□□□□□ -0.58
SYNE3-202ENST00000553340 J3QKU1 62 aa11.44□□□□□ -0.58
SYNE3-202ENST00000553340 A0A0U1RQV1 116 aa11.43□□□□□ -0.58
SYNE3-202ENST00000553340 FUSP35637 526 aaKnown RBP eCLIP11.43□□□□□ -0.58
SYNE3-202ENST00000553340 PRYO14603 147 aa11.43□□□□□ -0.58
SYNE3-202ENST00000553340 DHRS4-AS1Q9P1J3 65 aa11.42□□□□□ -0.58
SYNE3-202ENST00000553340 A0A1B0GW54 56 aa11.42□□□□□ -0.58
SYNE3-202ENST00000553340 MRAPQ8TCY5 172 aa11.41□□□□□ -0.58
SYNE3-202ENST00000553340 Q6ZRX8 168 aa11.4□□□□□ -0.58
SYNE3-202ENST00000553340 LINC00336Q6ZUF6 198 aa11.4□□□□□ -0.58
SYNE3-202ENST00000553340 LINC00474Q9P2X8 69 aa11.39□□□□□ -0.59
SYNE3-202ENST00000553340 PLA2G2DQ9UNK4 145 aa11.38□□□□□ -0.59
SYNE3-202ENST00000553340 TLX1NBP0CAT3 122 aa11.38□□□□□ -0.59
SYNE3-202ENST00000553340 A0A1W2PNM2 257 aa11.37□□□□□ -0.59
SYNE3-202ENST00000553340 RPL37AP8A6NKH3 93 aa11.37□□□□□ -0.59
SYNE3-202ENST00000553340 PRO0628Q9UI54 55 aa11.37□□□□□ -0.59
SYNE3-202ENST00000553340 ATRQ13535 2644 aa11.37□□□□□ -0.59
SYNE3-202ENST00000553340 HIGD2AQ9BW72 106 aa11.37□□□□□ -0.59
SYNE3-202ENST00000553340 ETDCA0A1B0GVM5 59 aa11.36□□□□□ -0.59
SYNE3-202ENST00000553340 C1orf137Q5JT78 98 aa11.36□□□□□ -0.59
SYNE3-202ENST00000553340 Q9BRP9 147 aa11.36□□□□□ -0.59
SYNE3-202ENST00000553340 KRTAP4-16G5E9R7 235 aaPredicted RBP11.35□□□□□ -0.59
SYNE3-202ENST00000553340 DEFB131BA0A096LNP1 70 aa11.35□□□□□ -0.59
SYNE3-202ENST00000553340 TNP2Q05952 138 aa11.35□□□□□ -0.59
SYNE3-202ENST00000553340 SMIM29Q86T20 159 aa11.35□□□□□ -0.59
SYNE3-202ENST00000553340 IGLV1-50A0A075B6I6 118 aa11.34□□□□□ -0.59
SYNE3-202ENST00000553340 TEP1Q99973 2627 aaKnown RBP11.34□□□□□ -0.59
SYNE3-202ENST00000553340 Q8NBF4 154 aa11.34□□□□□ -0.59
SYNE3-202ENST00000553340 TRRAPQ9Y4A5 3859 aa11.33□□□□□ -0.6
SYNE3-202ENST00000553340 SPRR1AP35321 89 aa11.33□□□□□ -0.6
SYNE3-202ENST00000553340 OXLD1Q5BKU9 147 aa11.33□□□□□ -0.6
SYNE3-202ENST00000553340 FAM30AQ9NZY2 134 aa11.33□□□□□ -0.6
SYNE3-202ENST00000553340 NSD1Q96L73 2696 aaPredicted RBP11.32□□□□□ -0.6
SYNE3-202ENST00000553340 IGLV5-37A0A075B6J1 123 aa11.32□□□□□ -0.6
SYNE3-202ENST00000553340 FAM168BA1KXE4 195 aa11.32□□□□□ -0.6
SYNE3-202ENST00000553340 DNAH10OSP0CZ25 163 aa11.32□□□□□ -0.6
SYNE3-202ENST00000553340 ST20-AS1Q8NBB2 130 aa11.32□□□□□ -0.6
SYNE3-202ENST00000553340 SPRR4Q96PI1 79 aa11.3□□□□□ -0.6
SYNE3-202ENST00000553340 PKD1L1Q8TDX9 2849 aa11.3□□□□□ -0.6
SYNE3-202ENST00000553340 KRTAP10-11P60412 298 aa11.3□□□□□ -0.6
SYNE3-202ENST00000553340 FAM229BQ4G0N7 80 aa11.3□□□□□ -0.6
SYNE3-202ENST00000553340 C11orf45Q8TAV5 145 aa11.3□□□□□ -0.6
SYNE3-202ENST00000553340 LCE6AA0A183 80 aa11.27□□□□□ -0.6
SYNE3-202ENST00000553340 OTOGQ6ZRI0 2925 aa11.27□□□□□ -0.61
SYNE3-202ENST00000553340 DSCR10P59022 87 aa11.26□□□□□ -0.61
SYNE3-202ENST00000553340 MPLKIPQ8TAP9 179 aa11.26□□□□□ -0.61
SYNE3-202ENST00000553340 UBE2BP63146 152 aa11.25□□□□□ -0.61
SYNE3-202ENST00000553340 MRPL55Q7Z7F7 128 aaKnown RBP11.25□□□□□ -0.61
SYNE3-202ENST00000553340 KRTAP7-1Q8IUC3 87 aa11.25□□□□□ -0.61
SYNE3-202ENST00000553340 HECTD1Q9ULT8 2610 aa11.23□□□□□ -0.61
SYNE3-202ENST00000553340 K7EQZ3 153 aa11.23□□□□□ -0.61
SYNE3-202ENST00000553340 CASC10Q5T4H9 136 aa11.22□□□□□ -0.61
SYNE3-202ENST00000553340 BRK1Q8WUW1 75 aa11.2□□□□□ -0.62
SYNE3-202ENST00000553340 REG3GQ6UW15 175 aa11.19□□□□□ -0.62
SYNE3-202ENST00000553340 LINC00588Q9Y4M8 146 aa11.19□□□□□ -0.62
SYNE3-202ENST00000553340 ZCCHC13Q8WW36 166 aaKnown RBP11.19□□□□□ -0.62
SYNE3-202ENST00000553340 TENM3Q9P273 2699 aa11.18□□□□□ -0.62
SYNE3-202ENST00000553340 LINC00476Q8WZB0 136 aa11.18□□□□□ -0.62
SYNE3-202ENST00000553340 HCG22E2RYF7 251 aa11.18□□□□□ -0.62
SYNE3-202ENST00000553340 hDV103S1A0JD37 113 aa11.17□□□□□ -0.62
SYNE3-202ENST00000553340 PSCAO43653 123 aa11.15□□□□□ -0.62
SYNE3-202ENST00000553340 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.15□□□□□ -0.62
SYNE3-202ENST00000553340 IGFL1Q6UW32 110 aa11.13□□□□□ -0.63
SYNE3-202ENST00000553340 C1orf64Q8NEQ6 169 aa11.12□□□□□ -0.63
SYNE3-202ENST00000553340 A0A0G2JQZ4 141 aa11.11□□□□□ -0.63
SYNE3-202ENST00000553340 A0A1W2PNN7 141 aa11.11□□□□□ -0.63
SYNE3-202ENST00000553340 PKIGQ9Y2B9 76 aa11.1□□□□□ -0.63
SYNE3-202ENST00000553340 DEFB116Q30KQ4 102 aa11.08□□□□□ -0.64
SYNE3-202ENST00000553340 LRCOL1A6NCL2 159 aa11.07□□□□□ -0.64
SYNE3-202ENST00000553340 A0A087WSZ3 146 aa11.07□□□□□ -0.64
SYNE3-202ENST00000553340 PRLHP81277 87 aa11.07□□□□□ -0.64
SYNE3-202ENST00000553340 IGLV8-61A0A075B6I0 122 aa11.06□□□□□ -0.64
SYNE3-202ENST00000553340 NDUFB1O75438 58 aa11.06□□□□□ -0.64
SYNE3-202ENST00000553340 WFDC13Q8IUB5 93 aa11.06□□□□□ -0.64
SYNE3-202ENST00000553340 ANK2Q01484 3957 aa11.06□□□□□ -0.64
SYNE3-202ENST00000553340 CYP4F30PQ9H0H9 118 aa11.06□□□□□ -0.64
SYNE3-202ENST00000553340 FLNBO75369 2602 aaKnown RBP11.06□□□□□ -0.64
SYNE3-202ENST00000553340 Q1T7F1 81 aa11.05□□□□□ -0.64
SYNE3-202ENST00000553340 MP68P56378 58 aa11.05□□□□□ -0.64
SYNE3-202ENST00000553340 A0A096LNI7 61 aa11.03□□□□□ -0.64
SYNE3-202ENST00000553340 F8P00451 2351 aa11.03□□□□□ -0.64
SYNE3-202ENST00000553340 IGKV2-24A0A0C4DH68 120 aa11.03□□□□□ -0.64
SYNE3-202ENST00000553340 PRR4Q16378 134 aa11.03□□□□□ -0.64
SYNE3-202ENST00000553340 C16orf90A8MZG2 172 aa11.02□□□□□ -0.65
SYNE3-202ENST00000553340 UBE2AP49459 152 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms