RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 FA2HQ7L5A8 372 aa5.6□□□□□ -1.51
VPS29-208ENST00000550267 USH2AO75445 5202 aa5.59□□□□□ -1.51
VPS29-208ENST00000550267 ATP6V1G1O75348 118 aa5.59□□□□□ -1.51
VPS29-208ENST00000550267 IGLV6-57P01721 117 aa5.59□□□□□ -1.51
VPS29-208ENST00000550267 MIR7-3HGQ8N6C7 128 aa5.59□□□□□ -1.51
VPS29-208ENST00000550267 SMCO4Q9NRQ5 59 aa5.59□□□□□ -1.51
VPS29-208ENST00000550267 A0A096LNJ9 63 aa5.58□□□□□ -1.52
VPS29-208ENST00000550267 S100A12P80511 92 aa5.58□□□□□ -1.52
VPS29-208ENST00000550267 HRCT1Q6UXD1 115 aa5.58□□□□□ -1.52
VPS29-208ENST00000550267 MEIG1Q5JSS6 88 aa5.57□□□□□ -1.52
VPS29-208ENST00000550267 Q6ZRX8 168 aa5.57□□□□□ -1.52
VPS29-208ENST00000550267 LIMD2Q9BT23 127 aa5.57□□□□□ -1.52
VPS29-208ENST00000550267 DDTP30046 118 aa5.56□□□□□ -1.52
VPS29-208ENST00000550267 BAGE3Q86Y29 109 aa5.56□□□□□ -1.52
VPS29-208ENST00000550267 ST20-AS1Q8NBB2 130 aa5.56□□□□□ -1.52
VPS29-208ENST00000550267 TMEM223A0PJW6 202 aa5.55□□□□□ -1.52
VPS29-208ENST00000550267 RPL37P61927 97 aaKnown RBP5.54□□□□□ -1.52
VPS29-208ENST00000550267 PMCHL1Q16048 86 aa5.54□□□□□ -1.52
VPS29-208ENST00000550267 URB1-AS1Q96HZ7 61 aa5.54□□□□□ -1.52
VPS29-208ENST00000550267 HBDP02042 147 aa5.53□□□□□ -1.52
VPS29-208ENST00000550267 SVIPQ8NHG7 77 aa5.53□□□□□ -1.52
VPS29-208ENST00000550267 CHTOPQ9Y3Y2 248 aaKnown RBP5.53□□□□□ -1.52
VPS29-208ENST00000550267 FABP9Q0Z7S8 132 aa5.52□□□□□ -1.53
VPS29-208ENST00000550267 TRBV10-2A0A0K0K1G8 114 aa5.51□□□□□ -1.53
VPS29-208ENST00000550267 HERV-K104P63124 156 aa5.51□□□□□ -1.53
VPS29-208ENST00000550267 JOSD1Q15040 202 aaPredicted RBP5.51□□□□□ -1.53
VPS29-208ENST00000550267 FCGBPQ9Y6R7 5405 aaPredicted RBP5.5□□□□□ -1.53
VPS29-208ENST00000550267 LINC00587B1AMM8 73 aa5.5□□□□□ -1.53
VPS29-208ENST00000550267 LINC00614P0C842 121 aa5.5□□□□□ -1.53
VPS29-208ENST00000550267 TRAV23DV6A0A075B6W5 121 aa5.49□□□□□ -1.53
VPS29-208ENST00000550267 CFC1P0CG37 223 aa5.49□□□□□ -1.53
VPS29-208ENST00000550267 S100A7L2Q5SY68 101 aa5.49□□□□□ -1.53
VPS29-208ENST00000550267 Q6Q795 121 aa5.49□□□□□ -1.53
VPS29-208ENST00000550267 MAP1LC3CQ9BXW4 147 aa5.49□□□□□ -1.53
VPS29-208ENST00000550267 LOC107984156A0A0G2JMH3 177 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 H7C2G1 150 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 SPRR1BP22528 89 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 S100PP25815 95 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 ARL17AQ8IVW1 177 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 C18orf32Q8TCD1 76 aa5.48□□□□□ -1.53
VPS29-208ENST00000550267 SPANXB1Q9NS25 103 aaPredicted RBP5.48□□□□□ -1.53
VPS29-208ENST00000550267 MYMXA0A1B0GTQ4 84 aa5.47□□□□□ -1.53
VPS29-208ENST00000550267 C5orf52A6NGY3 159 aa5.47□□□□□ -1.53
VPS29-208ENST00000550267 ZNF73O43830 326 aaPredicted RBP5.47□□□□□ -1.53
VPS29-208ENST00000550267 COX19Q49B96 90 aa5.47□□□□□ -1.53
VPS29-208ENST00000550267 C1orf195Q5TG92 126 aa5.47□□□□□ -1.53
VPS29-208ENST00000550267 SLC25A34Q6PIV7 304 aa5.46□□□□□ -1.54
VPS29-208ENST00000550267 SEC11CQ9BY50 192 aa5.46□□□□□ -1.54
VPS29-208ENST00000550267 LAMTOR3Q9UHA4 124 aa5.46□□□□□ -1.54
VPS29-208ENST00000550267 TRAV12-1A0A0B4J245 112 aa5.45□□□□□ -1.54
VPS29-208ENST00000550267 TSPEAR-AS2P59090 65 aa5.45□□□□□ -1.54
VPS29-208ENST00000550267 CD164Q04900 197 aa5.45□□□□□ -1.54
VPS29-208ENST00000550267 RPS10P5Q9NQ39 176 aa5.45□□□□□ -1.54
VPS29-208ENST00000550267 NDUFC2O95298 119 aa5.44□□□□□ -1.54
VPS29-208ENST00000550267 MIEN1Q9BRT3 115 aa5.44□□□□□ -1.54
VPS29-208ENST00000550267 IGKV2D-30A0A075B6S6 120 aa5.43□□□□□ -1.54
VPS29-208ENST00000550267 HINT1P49773 126 aaPredicted RBP5.43□□□□□ -1.54
VPS29-208ENST00000550267 Q1RN00 199 aa5.43□□□□□ -1.54
VPS29-208ENST00000550267 Q5XG85 94 aa5.43□□□□□ -1.54
VPS29-208ENST00000550267 IFI27L1Q96BM0 104 aa5.43□□□□□ -1.54
VPS29-208ENST00000550267 PRO1933Q9H354 126 aa5.43□□□□□ -1.54
VPS29-208ENST00000550267 NPC2P61916 151 aa5.42□□□□□ -1.54
VPS29-208ENST00000550267 SOSTDC1Q6X4U4 206 aa5.41□□□□□ -1.54
VPS29-208ENST00000550267 SMIM29Q86T20 159 aa5.41□□□□□ -1.54
VPS29-208ENST00000550267 COMMD7Q86VX2 200 aa5.41□□□□□ -1.54
VPS29-208ENST00000550267 TRAPPC1Q9Y5R8 145 aa5.41□□□□□ -1.54
VPS29-208ENST00000550267 A0A0G2JQZ4 141 aa5.4□□□□□ -1.54
VPS29-208ENST00000550267 TMEM218A2RU14 115 aa5.4□□□□□ -1.54
VPS29-208ENST00000550267 LEPROTO15243 131 aa5.4□□□□□ -1.54
VPS29-208ENST00000550267 DEFB105AQ8NG35 78 aa5.4□□□□□ -1.54
VPS29-208ENST00000550267 DHRS4-AS1Q9P1J3 65 aa5.4□□□□□ -1.54
VPS29-208ENST00000550267 SYNE2Q8WXH0 6885 aaKnown RBP5.39□□□□□ -1.55
VPS29-208ENST00000550267 IFITM2Q01629 132 aa5.39□□□□□ -1.55
VPS29-208ENST00000550267 TAL2Q16559 108 aa5.39□□□□□ -1.55
VPS29-208ENST00000550267 MACF1Q9UPN3 7388 aaKnown RBP5.38□□□□□ -1.55
VPS29-208ENST00000550267 H0Y8G0 127 aa5.38□□□□□ -1.55
VPS29-208ENST00000550267 J3QQQ9 107 aa5.38□□□□□ -1.55
VPS29-208ENST00000550267 AKR1D1P51857 326 aa5.38□□□□□ -1.55
VPS29-208ENST00000550267 CBY1Q9Y3M2 126 aa5.38□□□□□ -1.55
VPS29-208ENST00000550267 MT2AP02795 61 aa5.37□□□□□ -1.55
VPS29-208ENST00000550267 ADAMTSL4-AS1Q5T5F5 129 aa5.37□□□□□ -1.55
VPS29-208ENST00000550267 OR13C6PQ8NH95 151 aa5.37□□□□□ -1.55
VPS29-208ENST00000550267 TEX49A0A1B0GTD5 131 aa5.36□□□□□ -1.55
VPS29-208ENST00000550267 RHEBQ15382 184 aa5.36□□□□□ -1.55
VPS29-208ENST00000550267 ATP11AUNQ6ZP68 121 aa5.36□□□□□ -1.55
VPS29-208ENST00000550267 C20orf202A1L168 122 aa5.35□□□□□ -1.55
VPS29-208ENST00000550267 LGALS3P17931 250 aaKnown RBP5.35□□□□□ -1.55
VPS29-208ENST00000550267 COX7BP24311 80 aa5.35□□□□□ -1.55
VPS29-208ENST00000550267 NMUP48645 174 aa5.35□□□□□ -1.55
VPS29-208ENST00000550267 ELOF1P60002 83 aaKnown RBP5.35□□□□□ -1.55
VPS29-208ENST00000550267 CLLU1Q5K131 121 aa5.35□□□□□ -1.55
VPS29-208ENST00000550267 UQCC3Q6UW78 93 aa5.35□□□□□ -1.55
VPS29-208ENST00000550267 CHCHD1Q96BP2 118 aaKnown RBP5.35□□□□□ -1.55
VPS29-208ENST00000550267 A0A0J9YXY3 114 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 TCL1BO95988 128 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 MT1FP04733 61 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 C6orf99Q4VX62 202 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 Q75L30 129 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 PCP2Q8IVA1 136 aa5.33□□□□□ -1.56
VPS29-208ENST00000550267 HERVK_113P61574 105 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms