RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PDZD11Q5EBL8 140 aa2.44□□□□□ -2.02
LIMS1-214ENST00000542845 CYSLTR1Q9Y271 337 aa2.44□□□□□ -2.02
LIMS1-214ENST00000542845 KANTRA0A1W2PQU2 76 aa2.43□□□□□ -2.02
LIMS1-214ENST00000542845 KRTAP16-1A8MUX0 517 aa2.43□□□□□ -2.02
LIMS1-214ENST00000542845 NCR3O14931 201 aa2.43□□□□□ -2.02
LIMS1-214ENST00000542845 COA6Q5JTJ3 125 aaKnown RBP2.43□□□□□ -2.02
LIMS1-214ENST00000542845 ERG28Q9UKR5 140 aa2.43□□□□□ -2.02
LIMS1-214ENST00000542845 MRPL54Q6P161 138 aaKnown RBP2.42□□□□□ -2.02
LIMS1-214ENST00000542845 ATP11AUNQ6ZP68 121 aa2.42□□□□□ -2.02
LIMS1-214ENST00000542845 TMEM136Q6ZRR5 245 aa2.42□□□□□ -2.02
LIMS1-214ENST00000542845 PRELID3AQ96N28 172 aa2.42□□□□□ -2.02
LIMS1-214ENST00000542845 NAT8BQ9UHF3 227 aa2.42□□□□□ -2.02
LIMS1-214ENST00000542845 TRBV20-1A0A075B6N2 111 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 TRAV9-1A0A075B6T8 112 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 FAM236DA0A1B0GTK5 79 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 F8W036 122 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 FAM236CP0DP71 79 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 LINC00158P58513 81 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 ORMDL3Q8N138 153 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 OSTCQ9NRP0 149 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 V9GYV3 84 aa2.41□□□□□ -2.02
LIMS1-214ENST00000542845 TRBV10-3A0A0K0K1G6 114 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 TINCRA0A1B0GVN0 87 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 IGIPA6NJ69 53 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 HMSDA8MTL9 139 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 PPBPP02775 128 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 RPL23P62829 140 aaKnown RBP2.4□□□□□ -2.03
LIMS1-214ENST00000542845 S100A12P80511 92 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 ORMDL2Q53FV1 153 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 BOD1L2Q8IYS8 172 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 ST20-AS1Q8NBB2 130 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 C20orf166-AS1Q96NR2 134 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 SMIM7Q9BQ49 75 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 Q9BRP9 147 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 MAP1LC3AQ9H492 121 aa2.4□□□□□ -2.03
LIMS1-214ENST00000542845 A0A1B0GW15 77 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 H3BRM9 83 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 KRTAP2-3P0C7H8 128 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 SPRR1AP35321 89 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 COX17Q14061 63 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 PMVKQ15126 192 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 LCE1AQ5T7P2 110 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 C1orf195Q5TG92 126 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 CEND1Q8N111 149 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 Q8N8P6 123 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 SCGB3A1Q96QR1 104 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 KRTAP2-4Q9BYR9 128 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 KCNQ1DNQ9H478 68 aa2.39□□□□□ -2.03
LIMS1-214ENST00000542845 TMEM250H0YL14 139 aa2.38□□□□□ -2.03
LIMS1-214ENST00000542845 S100A8P05109 93 aa2.38□□□□□ -2.03
LIMS1-214ENST00000542845 ZNF345Q14585 488 aa2.38□□□□□ -2.03
LIMS1-214ENST00000542845 LINC00299Q6ZSB3 139 aa2.38□□□□□ -2.03
LIMS1-214ENST00000542845 PCP2Q8IVA1 136 aa2.38□□□□□ -2.03
LIMS1-214ENST00000542845 SMIM27A0A1W2PRY6 76 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 ADCYAP1P18509 176 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 NDUFA6P56556 154 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 ADIRFQ15847 76 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 CAMK2N1Q7Z7J9 78 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 RPS10P5Q9NQ39 176 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 V9GYY9 64 aa2.37□□□□□ -2.03
LIMS1-214ENST00000542845 A0A0G2JQZ4 141 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 HSBP1L1C9JCN9 74 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 SMIM13P0DJ93 91 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 DDTP30046 118 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 JOSD1Q15040 202 aaPredicted RBP2.36□□□□□ -2.03
LIMS1-214ENST00000542845 Q6ZRX8 168 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 KRTAP5-2Q701N4 177 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 TOMM6Q96B49 74 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 OBSCN-AS1Q96MR7 158 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 CST9LQ9H4G1 147 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 LAMTOR3Q9UHA4 124 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 MDN1Q9NU22 5596 aa2.36□□□□□ -2.03
LIMS1-214ENST00000542845 G0S2P27469 103 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 DSCR10P59022 87 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 MEIG1Q5JSS6 88 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 DEFB105AQ8NG35 78 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 PRO1933Q9H354 126 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 KMT2DO14686 5537 aa2.35□□□□□ -2.03
LIMS1-214ENST00000542845 A0A1B0GXF2 115 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 NMUP48645 174 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 VAMP3Q15836 100 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 TAL2Q16559 108 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 S100A7L2Q5SY68 101 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 C10orf91Q5T1B1 145 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 TMEM170BQ5T4T1 132 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 SLC25A34Q6PIV7 304 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 MIR7-3HGQ8N6C7 128 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 Q96NJ1 140 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 MAP1LC3CQ9BXW4 147 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 NXT2Q9NPJ8 142 aaKnown RBP2.34□□□□□ -2.03
LIMS1-214ENST00000542845 LAMTOR2Q9Y2Q5 125 aa2.34□□□□□ -2.03
LIMS1-214ENST00000542845 A6NDN8 102 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 K7EMI3 77 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 SRP19P09132 144 aaKnown RBP2.33□□□□□ -2.04
LIMS1-214ENST00000542845 ZNF22P17026 224 aaPredicted RBP2.33□□□□□ -2.04
LIMS1-214ENST00000542845 AKR1D1P51857 326 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 CD164Q04900 197 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 C6orf99Q4VX62 202 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 ALKAL2Q6UX46 152 aa2.33□□□□□ -2.04
LIMS1-214ENST00000542845 Q6ZVH6 145 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms