RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SERP2Q8N6R1 65 aa7.09□□□□□ -1.27
CLIP1-213ENST00000540338 OBSCN-AS1Q96MR7 158 aa7.09□□□□□ -1.27
CLIP1-213ENST00000540338 REG3GQ6UW15 175 aa7.09□□□□□ -1.27
CLIP1-213ENST00000540338 C3orf84H3BNL1 204 aa7.09□□□□□ -1.28
CLIP1-213ENST00000540338 SMIM20Q8N5G0 67 aa7.09□□□□□ -1.28
CLIP1-213ENST00000540338 Q6ZVQ6 151 aa7.08□□□□□ -1.28
CLIP1-213ENST00000540338 SERTAD4-AS1Q5TG53 156 aa7.08□□□□□ -1.28
CLIP1-213ENST00000540338 NHLRC4P0CG21 123 aaPredicted RBP7.08□□□□□ -1.28
CLIP1-213ENST00000540338 LINC00528Q8N1L1 170 aa7.07□□□□□ -1.28
CLIP1-213ENST00000540338 M0R2N4 97 aa7.07□□□□□ -1.28
CLIP1-213ENST00000540338 KCNQ1DNQ9H478 68 aa7.07□□□□□ -1.28
CLIP1-213ENST00000540338 KRTAP26-1Q6PEX3 210 aa7.07□□□□□ -1.28
CLIP1-213ENST00000540338 TLX1NBP0CAT3 122 aa7.06□□□□□ -1.28
CLIP1-213ENST00000540338 B9D2Q9BPU9 175 aa7.06□□□□□ -1.28
CLIP1-213ENST00000540338 LINC01547P58512 204 aaPredicted RBP7.05□□□□□ -1.28
CLIP1-213ENST00000540338 CASC10Q5T4H9 136 aa7.05□□□□□ -1.28
CLIP1-213ENST00000540338 Q6ZRX8 168 aa7.05□□□□□ -1.28
CLIP1-213ENST00000540338 NBPF19A0A087WUL8 3843 aa7.05□□□□□ -1.28
CLIP1-213ENST00000540338 FAM168BA1KXE4 195 aa7.04□□□□□ -1.28
CLIP1-213ENST00000540338 C1orf137Q5JT78 98 aa7.04□□□□□ -1.28
CLIP1-213ENST00000540338 LINC00474Q9P2X8 69 aa7.04□□□□□ -1.28
CLIP1-213ENST00000540338 OTOGQ6ZRI0 2925 aa7.03□□□□□ -1.28
CLIP1-213ENST00000540338 PLA2G2DQ9UNK4 145 aa7.03□□□□□ -1.28
CLIP1-213ENST00000540338 IGLV1-50A0A075B6I6 118 aa7.02□□□□□ -1.28
CLIP1-213ENST00000540338 C20orf197Q8N268 126 aa7.02□□□□□ -1.28
CLIP1-213ENST00000540338 MDFIQ99750 246 aa7.02□□□□□ -1.28
CLIP1-213ENST00000540338 ZFHX3Q15911 3703 aa7.02□□□□□ -1.29
CLIP1-213ENST00000540338 ANK3Q12955 4377 aaKnown RBP7.02□□□□□ -1.29
CLIP1-213ENST00000540338 BAHCC1Q9P281 2608 aa7.02□□□□□ -1.29
CLIP1-213ENST00000540338 CXCL6P80162 114 aa7.02□□□□□ -1.29
CLIP1-213ENST00000540338 TENM1Q9UKZ4 2725 aa7.01□□□□□ -1.29
CLIP1-213ENST00000540338 C16orf90A8MZG2 172 aa7.01□□□□□ -1.29
CLIP1-213ENST00000540338 VWFP04275 2813 aa7□□□□□ -1.29
CLIP1-213ENST00000540338 NBDYA0A0U1RRE5 68 aa7□□□□□ -1.29
CLIP1-213ENST00000540338 PRLHP81277 87 aa7□□□□□ -1.29
CLIP1-213ENST00000540338 A0A096LNI7 61 aa6.99□□□□□ -1.29
CLIP1-213ENST00000540338 TRBV7-4A0A0J9YYF1 115 aa6.99□□□□□ -1.29
CLIP1-213ENST00000540338 APLNQ9ULZ1 77 aa6.98□□□□□ -1.29
CLIP1-213ENST00000540338 ST20-AS1Q8NBB2 130 aa6.98□□□□□ -1.29
CLIP1-213ENST00000540338 TRAV7A0A075B6U4 112 aa6.98□□□□□ -1.29
CLIP1-213ENST00000540338 IGLV5-37A0A075B6J1 123 aa6.97□□□□□ -1.29
CLIP1-213ENST00000540338 Q8N377 158 aa6.96□□□□□ -1.3
CLIP1-213ENST00000540338 CDK2AP2O75956 126 aa6.96□□□□□ -1.3
CLIP1-213ENST00000540338 A0A1B0GW54 56 aa6.95□□□□□ -1.3
CLIP1-213ENST00000540338 Q9BRP9 147 aa6.95□□□□□ -1.3
CLIP1-213ENST00000540338 J3KT08 172 aa6.94□□□□□ -1.3
CLIP1-213ENST00000540338 CHTF8P0CG12 524 aa6.94□□□□□ -1.3
CLIP1-213ENST00000540338 TMEM258P61165 79 aa6.94□□□□□ -1.3
CLIP1-213ENST00000540338 CNBPP62633 177 aaKnown RBP6.94□□□□□ -1.3
CLIP1-213ENST00000540338 PHF5AQ7RTV0 110 aaKnown RBP6.94□□□□□ -1.3
CLIP1-213ENST00000540338 CRYGAP11844 174 aa6.94□□□□□ -1.3
CLIP1-213ENST00000540338 ZNF469Q96JG9 3925 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-213ENST00000540338 BCE1O60756 84 aa6.93□□□□□ -1.3
CLIP1-213ENST00000540338 LY6G6CO95867 125 aa6.93□□□□□ -1.3
CLIP1-213ENST00000540338 Q8NBF4 154 aa6.93□□□□□ -1.3
CLIP1-213ENST00000540338 Q8N9L7 120 aa6.93□□□□□ -1.3
CLIP1-213ENST00000540338 CUBNO60494 3623 aa6.92□□□□□ -1.3
CLIP1-213ENST00000540338 NDUFB1O75438 58 aa6.92□□□□□ -1.3
CLIP1-213ENST00000540338 NBEAL1Q6ZS30 2694 aa6.91□□□□□ -1.3
CLIP1-213ENST00000540338 SNURFQ9Y675 71 aa6.91□□□□□ -1.3
CLIP1-213ENST00000540338 C9orf163Q8N9P6 203 aa6.91□□□□□ -1.3
CLIP1-213ENST00000540338 A0A1W2PNN7 141 aa6.9□□□□□ -1.3
CLIP1-213ENST00000540338 LINC00476Q8WZB0 136 aa6.9□□□□□ -1.3
CLIP1-213ENST00000540338 A0A087WSZ3 146 aa6.9□□□□□ -1.31
CLIP1-213ENST00000540338 EPM2AB3EWF7 344 aa6.9□□□□□ -1.31
CLIP1-213ENST00000540338 C1orf134Q5TEV5 83 aa6.9□□□□□ -1.31
CLIP1-213ENST00000540338 ERC2-IT1O76042 136 aa6.89□□□□□ -1.31
CLIP1-213ENST00000540338 ZNF706Q9Y5V0 76 aaPredicted RBP6.89□□□□□ -1.31
CLIP1-213ENST00000540338 FAM236DA0A1B0GTK5 79 aa6.89□□□□□ -1.31
CLIP1-213ENST00000540338 FAM236CP0DP71 79 aa6.89□□□□□ -1.31
CLIP1-213ENST00000540338 IGLV5-52A0A0A0MRZ9 124 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 H0Y9J4 135 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 IGLV5-48A0A075B6I7 105 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 KRTAP1-5Q9BYS1 174 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 NDUFC1O43677 76 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 SPRR1AP35321 89 aa6.88□□□□□ -1.31
CLIP1-213ENST00000540338 IGLV9-49A0A0B4J1Y8 123 aa6.87□□□□□ -1.31
CLIP1-213ENST00000540338 MP68P56378 58 aa6.87□□□□□ -1.31
CLIP1-213ENST00000540338 WFDC13Q8IUB5 93 aa6.85□□□□□ -1.31
CLIP1-213ENST00000540338 FAM30AQ9NZY2 134 aa6.85□□□□□ -1.31
CLIP1-213ENST00000540338 DEFB116Q30KQ4 102 aa6.85□□□□□ -1.31
CLIP1-213ENST00000540338 TENM3Q9P273 2699 aa6.84□□□□□ -1.31
CLIP1-213ENST00000540338 A0A1W2PNM2 257 aa6.84□□□□□ -1.31
CLIP1-213ENST00000540338 RTL8CO15255 209 aa6.84□□□□□ -1.31
CLIP1-213ENST00000540338 TMEM254Q8TBM7 123 aa6.83□□□□□ -1.32
CLIP1-213ENST00000540338 A0A087WTM6 91 aa6.82□□□□□ -1.32
CLIP1-213ENST00000540338 IGFL1Q6UW32 110 aa6.82□□□□□ -1.32
CLIP1-213ENST00000540338 HRCT1Q6UXD1 115 aa6.82□□□□□ -1.32
CLIP1-213ENST00000540338 STAB2Q8WWQ8 2551 aa6.82□□□□□ -1.32
CLIP1-213ENST00000540338 NDUFS5O43920 106 aa6.81□□□□□ -1.32
CLIP1-213ENST00000540338 HCG22E2RYF7 251 aa6.81□□□□□ -1.32
CLIP1-213ENST00000540338 SMIM29Q86T20 159 aa6.81□□□□□ -1.32
CLIP1-213ENST00000540338 KRTAP4-16G5E9R7 235 aaPredicted RBP6.8□□□□□ -1.32
CLIP1-213ENST00000540338 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
CLIP1-213ENST00000540338 ATP5EP56381 51 aaPredicted RBP6.79□□□□□ -1.32
CLIP1-213ENST00000540338 AKAP9Q99996 3911 aa6.79□□□□□ -1.32
CLIP1-213ENST00000540338 A0A0G2JQZ4 141 aa6.79□□□□□ -1.32
CLIP1-213ENST00000540338 SPRR4Q96PI1 79 aa6.77□□□□□ -1.33
CLIP1-213ENST00000540338 CASC2Q6XLA1 102 aa6.77□□□□□ -1.33
CLIP1-213ENST00000540338 LRCOL1A6NCL2 159 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms