RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 DEFB135Q30KP9 77 aa11.68□□□□□ -0.54
RAB40C-205ENST00000539661 ANK2Q01484 3957 aa11.67□□□□□ -0.54
RAB40C-205ENST00000539661 APOC4P55056 127 aa11.67□□□□□ -0.54
RAB40C-205ENST00000539661 INAFM1C9JVW0 142 aa11.66□□□□□ -0.54
RAB40C-205ENST00000539661 CAMK2N2Q96S95 79 aa11.66□□□□□ -0.54
RAB40C-205ENST00000539661 STAB1Q9NY15 2570 aa11.65□□□□□ -0.54
RAB40C-205ENST00000539661 HIGD2BQ4VC39 106 aa11.65□□□□□ -0.54
RAB40C-205ENST00000539661 Q8N9L7 120 aa11.64□□□□□ -0.55
RAB40C-205ENST00000539661 SPART-AS1P0CW21 52 aa11.64□□□□□ -0.55
RAB40C-205ENST00000539661 Q8NAQ8 132 aa11.64□□□□□ -0.55
RAB40C-205ENST00000539661 FBN1P35555 2871 aaKnown RBP11.64□□□□□ -0.55
RAB40C-205ENST00000539661 A0A1B0GW54 56 aa11.63□□□□□ -0.55
RAB40C-205ENST00000539661 FUSP35637 526 aaKnown RBP eCLIP11.63□□□□□ -0.552e-6■■■□□ 19.1
RAB40C-205ENST00000539661 C1orf43Q9BWL3 253 aa11.62□□□□□ -0.55
RAB40C-205ENST00000539661 HTN3P15516 51 aa11.6□□□□□ -0.55
RAB40C-205ENST00000539661 ESRGQ1W209 222 aa11.6□□□□□ -0.55
RAB40C-205ENST00000539661 Q6ZTC4 211 aa11.59□□□□□ -0.55
RAB40C-205ENST00000539661 Q6ZRU5 148 aa11.59□□□□□ -0.55
RAB40C-205ENST00000539661 IGLV5-48A0A075B6I7 105 aa11.58□□□□□ -0.55
RAB40C-205ENST00000539661 FAM229BQ4G0N7 80 aa11.58□□□□□ -0.56
RAB40C-205ENST00000539661 KRTAP26-1Q6PEX3 210 aa11.57□□□□□ -0.56
RAB40C-205ENST00000539661 F8WDY8 70 aa11.57□□□□□ -0.56
RAB40C-205ENST00000539661 MAST4O15021 2626 aa11.56□□□□□ -0.56
RAB40C-205ENST00000539661 C3orf84H3BNL1 204 aa11.56□□□□□ -0.56
RAB40C-205ENST00000539661 KCNQ1DNQ9H478 68 aa11.56□□□□□ -0.56
RAB40C-205ENST00000539661 HIGD2AQ9BW72 106 aa11.56□□□□□ -0.56
RAB40C-205ENST00000539661 LCE6AA0A183 80 aa11.55□□□□□ -0.56
RAB40C-205ENST00000539661 BRK1Q8WUW1 75 aa11.55□□□□□ -0.56
RAB40C-205ENST00000539661 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
RAB40C-205ENST00000539661 KPRPQ5T749 579 aaPredicted RBP11.54□□□□□ -0.56
RAB40C-205ENST00000539661 Q8N377 158 aa11.54□□□□□ -0.56
RAB40C-205ENST00000539661 NOTCH1P46531 2555 aa11.54□□□□□ -0.56
RAB40C-205ENST00000539661 MPLKIPQ8TAP9 179 aa11.52□□□□□ -0.57
RAB40C-205ENST00000539661 Q6ZRP5 223 aa11.52□□□□□ -0.57
RAB40C-205ENST00000539661 PKIGQ9Y2B9 76 aa11.51□□□□□ -0.57
RAB40C-205ENST00000539661 SMIM29Q86T20 159 aa11.5□□□□□ -0.57
RAB40C-205ENST00000539661 DHRS4-AS1Q9P1J3 65 aa11.5□□□□□ -0.57
RAB40C-205ENST00000539661 H3BNG1 76 aa11.5□□□□□ -0.57
RAB40C-205ENST00000539661 WFDC10BQ8IUB3 73 aa11.5□□□□□ -0.57
RAB40C-205ENST00000539661 NKAPP1Q8N9T2 125 aa11.49□□□□□ -0.57
RAB40C-205ENST00000539661 DEFB105AQ8NG35 78 aa11.49□□□□□ -0.57
RAB40C-205ENST00000539661 FAM30AQ9NZY2 134 aa11.47□□□□□ -0.57
RAB40C-205ENST00000539661 hDV103S1A0JD37 113 aa11.47□□□□□ -0.57
RAB40C-205ENST00000539661 A0A1W2PNM2 257 aa11.46□□□□□ -0.57
RAB40C-205ENST00000539661 COL6A5A8TX70 2615 aa11.46□□□□□ -0.58
RAB40C-205ENST00000539661 TNP2Q05952 138 aa11.46□□□□□ -0.58
RAB40C-205ENST00000539661 C7orf33Q8WU49 177 aa11.46□□□□□ -0.58
RAB40C-205ENST00000539661 TENM3Q9P273 2699 aa11.46□□□□□ -0.58
RAB40C-205ENST00000539661 SYCNQ0VAF6 134 aa11.45□□□□□ -0.58
RAB40C-205ENST00000539661 Q8NBF4 154 aa11.45□□□□□ -0.58
RAB40C-205ENST00000539661 ZCCHC13Q8WW36 166 aaKnown RBP11.44□□□□□ -0.58
RAB40C-205ENST00000539661 PLA2G2DQ9UNK4 145 aa11.44□□□□□ -0.58
RAB40C-205ENST00000539661 C1orf137Q5JT78 98 aa11.44□□□□□ -0.58
RAB40C-205ENST00000539661 Q6ZRX8 168 aa11.44□□□□□ -0.58
RAB40C-205ENST00000539661 C1orf195Q5TG92 126 aa11.43□□□□□ -0.58
RAB40C-205ENST00000539661 SPRR4Q96PI1 79 aa11.43□□□□□ -0.58
RAB40C-205ENST00000539661 ETDCA0A1B0GVM5 59 aa11.42□□□□□ -0.58
RAB40C-205ENST00000539661 SERTAD4-AS1Q5TG53 156 aa11.42□□□□□ -0.58
RAB40C-205ENST00000539661 KRTAP4-16G5E9R7 235 aaPredicted RBP11.41□□□□□ -0.58
RAB40C-205ENST00000539661 Q1T7F1 81 aa11.4□□□□□ -0.58
RAB40C-205ENST00000539661 TLX1NBP0CAT3 122 aa11.4□□□□□ -0.58
RAB40C-205ENST00000539661 SPRR1AP35321 89 aa11.39□□□□□ -0.59
RAB40C-205ENST00000539661 DSCR10P59022 87 aa11.39□□□□□ -0.59
RAB40C-205ENST00000539661 Q9BRP9 147 aa11.39□□□□□ -0.59
RAB40C-205ENST00000539661 V9GYY9 64 aa11.39□□□□□ -0.59
RAB40C-205ENST00000539661 IGLV5-37A0A075B6J1 123 aa11.38□□□□□ -0.59
RAB40C-205ENST00000539661 C1orf64Q8NEQ6 169 aa11.38□□□□□ -0.59
RAB40C-205ENST00000539661 NBEAL1Q6ZS30 2694 aa11.37□□□□□ -0.59
RAB40C-205ENST00000539661 LINC01556Q5JQF7 62 aa11.37□□□□□ -0.59
RAB40C-205ENST00000539661 IGKV2D-24A0A075B6R9 120 aa11.37□□□□□ -0.59
RAB40C-205ENST00000539661 CMYA5Q8N3K9 4069 aa11.36□□□□□ -0.59
RAB40C-205ENST00000539661 IGLV1-50A0A075B6I6 118 aa11.36□□□□□ -0.59
RAB40C-205ENST00000539661 CYP4F30PQ9H0H9 118 aa11.36□□□□□ -0.59
RAB40C-205ENST00000539661 K7EQZ3 153 aa11.34□□□□□ -0.59
RAB40C-205ENST00000539661 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.34□□□□□ -0.59
RAB40C-205ENST00000539661 PRR15Q8IV56 129 aa11.33□□□□□ -0.6
RAB40C-205ENST00000539661 BAHCC1Q9P281 2608 aa11.32□□□□□ -0.6
RAB40C-205ENST00000539661 HCG22E2RYF7 251 aa11.32□□□□□ -0.6
RAB40C-205ENST00000539661 ST20-AS1Q8NBB2 130 aa11.32□□□□□ -0.6
RAB40C-205ENST00000539661 NDUFB1O75438 58 aa11.31□□□□□ -0.6
RAB40C-205ENST00000539661 RPL37AP8A6NKH3 93 aa11.31□□□□□ -0.6
RAB40C-205ENST00000539661 OXLD1Q5BKU9 147 aa11.3□□□□□ -0.6
RAB40C-205ENST00000539661 SEC61GP60059 68 aa11.27□□□□□ -0.6
RAB40C-205ENST00000539661 LRCOL1A6NCL2 159 aa11.26□□□□□ -0.61
RAB40C-205ENST00000539661 FAM168BA1KXE4 195 aa11.25□□□□□ -0.61
RAB40C-205ENST00000539661 PSCAO43653 123 aa11.25□□□□□ -0.61
RAB40C-205ENST00000539661 DNAH10OSP0CZ25 163 aa11.24□□□□□ -0.61
RAB40C-205ENST00000539661 RETNQ9HD89 108 aa11.24□□□□□ -0.61
RAB40C-205ENST00000539661 MGAM2Q2M2H8 2515 aa11.24□□□□□ -0.61
RAB40C-205ENST00000539661 UBE2BP63146 152 aa11.23□□□□□ -0.61
RAB40C-205ENST00000539661 MRPL55Q7Z7F7 128 aaKnown RBP11.23□□□□□ -0.61
RAB40C-205ENST00000539661 LINC00476Q8WZB0 136 aa11.23□□□□□ -0.61
RAB40C-205ENST00000539661 TRAV22A0A0B4J277 110 aa11.22□□□□□ -0.61
RAB40C-205ENST00000539661 MP68P56378 58 aa11.22□□□□□ -0.61
RAB40C-205ENST00000539661 LYSTQ99698 3801 aa11.22□□□□□ -0.61
RAB40C-205ENST00000539661 KRTAP7-1Q8IUC3 87 aa11.22□□□□□ -0.61
RAB40C-205ENST00000539661 REG3GQ6UW15 175 aa11.19□□□□□ -0.62
RAB40C-205ENST00000539661 PRB2P02812 416 aaPredicted RBP11.19□□□□□ -0.62
RAB40C-205ENST00000539661 IGFL1Q6UW32 110 aa11.18□□□□□ -0.62
RAB40C-205ENST00000539661 IGLV8-61A0A075B6I0 122 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms