RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SNURFQ9Y675 71 aa12.67□□□□□ -0.38
VPS28-213ENST00000530983 CXCL6P80162 114 aa12.66□□□□□ -0.38
VPS28-213ENST00000530983 RMI2Q96E14 147 aa12.65□□□□□ -0.38
VPS28-213ENST00000530983 LINC01556Q5JQF7 62 aa12.65□□□□□ -0.39
VPS28-213ENST00000530983 IGKV2D-24A0A075B6R9 120 aa12.64□□□□□ -0.39
VPS28-213ENST00000530983 SYCNQ0VAF6 134 aa12.61□□□□□ -0.39
VPS28-213ENST00000530983 DEFB131BA0A096LNP1 70 aa12.6□□□□□ -0.39
VPS28-213ENST00000530983 F8WEM9 126 aa12.6□□□□□ -0.39
VPS28-213ENST00000530983 SCXQ7RTU7 201 aa12.6□□□□□ -0.39
VPS28-213ENST00000530983 F8WDY8 70 aa12.59□□□□□ -0.39
VPS28-213ENST00000530983 CMYA5Q8N3K9 4069 aa12.59□□□□□ -0.39
VPS28-213ENST00000530983 TM2D3Q9BRN9 247 aa12.58□□□□□ -0.4
VPS28-213ENST00000530983 SERTAD4-AS1Q5TG53 156 aa12.57□□□□□ -0.4
VPS28-213ENST00000530983 KCNQ1DNQ9H478 68 aa12.57□□□□□ -0.4
VPS28-213ENST00000530983 C11orf45Q8TAV5 145 aa12.56□□□□□ -0.4
VPS28-213ENST00000530983 NKAPP1Q8N9T2 125 aa12.55□□□□□ -0.4
VPS28-213ENST00000530983 C7orf33Q8WU49 177 aa12.55□□□□□ -0.4
VPS28-213ENST00000530983 NDUFC1O43677 76 aa12.54□□□□□ -0.4
VPS28-213ENST00000530983 LINC00336Q6ZUF6 198 aa12.54□□□□□ -0.4
VPS28-213ENST00000530983 FP248Q71RG6 208 aaPredicted RBP12.54□□□□□ -0.4
VPS28-213ENST00000530983 DNAH10OSP0CZ25 163 aa12.54□□□□□ -0.4
VPS28-213ENST00000530983 F8P00451 2351 aa12.53□□□□□ -0.4
VPS28-213ENST00000530983 KRTAP24-1Q3LI83 254 aa12.53□□□□□ -0.4
VPS28-213ENST00000530983 MRAPQ8TCY5 172 aa12.53□□□□□ -0.4
VPS28-213ENST00000530983 SMIM26A0A096LP01 95 aa12.51□□□□□ -0.41
VPS28-213ENST00000530983 ATP5EP56381 51 aaPredicted RBP12.5□□□□□ -0.41
VPS28-213ENST00000530983 STAB1Q9NY15 2570 aa12.5□□□□□ -0.41
VPS28-213ENST00000530983 DNAH3Q8TD57 4116 aa12.5□□□□□ -0.41
VPS28-213ENST00000530983 TLX1NBP0CAT3 122 aa12.49□□□□□ -0.41
VPS28-213ENST00000530983 Q8N377 158 aa12.49□□□□□ -0.41
VPS28-213ENST00000530983 FLNBO75369 2602 aaKnown RBP12.49□□□□□ -0.41
VPS28-213ENST00000530983 ERC2-IT1O76042 136 aa12.49□□□□□ -0.41
VPS28-213ENST00000530983 NREPQ16612 68 aa12.49□□□□□ -0.41
VPS28-213ENST00000530983 DEFB105AQ8NG35 78 aa12.49□□□□□ -0.41
VPS28-213ENST00000530983 FBN1P35555 2871 aaKnown RBP12.48□□□□□ -0.41
VPS28-213ENST00000530983 PRO0628Q9UI54 55 aa12.48□□□□□ -0.41
VPS28-213ENST00000530983 LINC00474Q9P2X8 69 aa12.47□□□□□ -0.41
VPS28-213ENST00000530983 PLA2G2DQ9UNK4 145 aa12.46□□□□□ -0.41
VPS28-213ENST00000530983 FAM168BA1KXE4 195 aa12.46□□□□□ -0.41
VPS28-213ENST00000530983 BPY2O14599 106 aa12.46□□□□□ -0.41
VPS28-213ENST00000530983 CASC10Q5T4H9 136 aa12.46□□□□□ -0.41
VPS28-213ENST00000530983 RPL37AP8A6NKH3 93 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 Q8N9L7 120 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 IGLV5-48A0A075B6I7 105 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 KRTAP4-16G5E9R7 235 aaPredicted RBP12.45□□□□□ -0.42
VPS28-213ENST00000530983 Q6ZRX8 168 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 LINC00588Q9Y4M8 146 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 DNAH1Q9P2D7 4330 aa12.45□□□□□ -0.42
VPS28-213ENST00000530983 TMEM254Q8TBM7 123 aa12.44□□□□□ -0.42
VPS28-213ENST00000530983 C3orf84H3BNL1 204 aa12.44□□□□□ -0.42
VPS28-213ENST00000530983 Q9BRP9 147 aa12.44□□□□□ -0.42
VPS28-213ENST00000530983 IGKV4-1P06312 121 aa12.43□□□□□ -0.42
VPS28-213ENST00000530983 IGLV1-50A0A075B6I6 118 aa12.43□□□□□ -0.42
VPS28-213ENST00000530983 KRTAP7-1Q8IUC3 87 aa12.42□□□□□ -0.42
VPS28-213ENST00000530983 DHRS4-AS1Q9P1J3 65 aa12.42□□□□□ -0.42
VPS28-213ENST00000530983 IGLV5-37A0A075B6J1 123 aa12.42□□□□□ -0.42
VPS28-213ENST00000530983 SPRR1AP35321 89 aa12.41□□□□□ -0.42
VPS28-213ENST00000530983 NOTCH1P46531 2555 aa12.41□□□□□ -0.42
VPS28-213ENST00000530983 PRYO14603 147 aa12.4□□□□□ -0.42
VPS28-213ENST00000530983 MAST4O15021 2626 aa12.4□□□□□ -0.42
VPS28-213ENST00000530983 ETDCA0A1B0GVM5 59 aa12.37□□□□□ -0.43
VPS28-213ENST00000530983 TNP2Q05952 138 aa12.37□□□□□ -0.43
VPS28-213ENST00000530983 ST20-AS1Q8NBB2 130 aa12.37□□□□□ -0.43
VPS28-213ENST00000530983 OCR1Q9BZK8 76 aa12.37□□□□□ -0.43
VPS28-213ENST00000530983 FAM229BQ4G0N7 80 aa12.36□□□□□ -0.43
VPS28-213ENST00000530983 A0A1W2PNM2 257 aa12.36□□□□□ -0.43
VPS28-213ENST00000530983 A0A0U1RQV1 116 aa12.34□□□□□ -0.43
VPS28-213ENST00000530983 FUSP35637 526 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS28-213ENST00000530983 MRPL55Q7Z7F7 128 aaKnown RBP12.33□□□□□ -0.44
VPS28-213ENST00000530983 PRB2P02812 416 aaPredicted RBP12.32□□□□□ -0.44
VPS28-213ENST00000530983 C1orf137Q5JT78 98 aa12.32□□□□□ -0.44
VPS28-213ENST00000530983 A0A1B0GW54 56 aa12.31□□□□□ -0.44
VPS28-213ENST00000530983 BAHCC1Q9P281 2608 aa12.3□□□□□ -0.44
VPS28-213ENST00000530983 HUWE1Q7Z6Z7 4374 aaKnown RBP12.29□□□□□ -0.44
VPS28-213ENST00000530983 NBEAL1Q6ZS30 2694 aa12.29□□□□□ -0.44
VPS28-213ENST00000530983 Q8NBF4 154 aa12.29□□□□□ -0.44
VPS28-213ENST00000530983 MPLKIPQ8TAP9 179 aa12.28□□□□□ -0.44
VPS28-213ENST00000530983 HIGD2AQ9BW72 106 aa12.28□□□□□ -0.44
VPS28-213ENST00000530983 PKIGQ9Y2B9 76 aa12.27□□□□□ -0.45
VPS28-213ENST00000530983 UBE2BP63146 152 aa12.26□□□□□ -0.45
VPS28-213ENST00000530983 SPRR4Q96PI1 79 aa12.26□□□□□ -0.45
VPS28-213ENST00000530983 BRK1Q8WUW1 75 aa12.26□□□□□ -0.45
VPS28-213ENST00000530983 REG3GQ6UW15 175 aa12.25□□□□□ -0.45
VPS28-213ENST00000530983 LYSTQ99698 3801 aa12.23□□□□□ -0.45
VPS28-213ENST00000530983 DNAH10Q8IVF4 4471 aa12.22□□□□□ -0.45
VPS28-213ENST00000530983 SMIM29Q86T20 159 aa12.22□□□□□ -0.45
VPS28-213ENST00000530983 K7EIL1 84 aa12.2□□□□□ -0.46
VPS28-213ENST00000530983 FAM30AQ9NZY2 134 aa12.2□□□□□ -0.46
VPS28-213ENST00000530983 LCE6AA0A183 80 aa12.2□□□□□ -0.46
VPS28-213ENST00000530983 DSCR10P59022 87 aa12.19□□□□□ -0.46
VPS28-213ENST00000530983 KRTAP1-5Q9BYS1 174 aa12.18□□□□□ -0.46
VPS28-213ENST00000530983 A0A096LNI7 61 aa12.17□□□□□ -0.46
VPS28-213ENST00000530983 LINC00476Q8WZB0 136 aa12.17□□□□□ -0.46
VPS28-213ENST00000530983 COL6A5A8TX70 2615 aa12.17□□□□□ -0.46
VPS28-213ENST00000530983 A0A0G2JQZ4 141 aa12.15□□□□□ -0.46
VPS28-213ENST00000530983 A0A1W2PNN7 141 aa12.15□□□□□ -0.46
VPS28-213ENST00000530983 IGKV2-24A0A0C4DH68 120 aa12.15□□□□□ -0.46
VPS28-213ENST00000530983 K7EQZ3 153 aa12.15□□□□□ -0.46
VPS28-213ENST00000530983 DNAH9Q9NYC9 4486 aa12.14□□□□□ -0.47
VPS28-213ENST00000530983 C16orf90A8MZG2 172 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms