RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ANKRD39Q53RE8 183 aa6.1□□□□□ -1.43
CD44-227ENST00000528086 LINC00308Q8TCZ7 52 aa6.1□□□□□ -1.43
CD44-227ENST00000528086 PPDPFQ9H3Y8 114 aa6.1□□□□□ -1.43
CD44-227ENST00000528086 ETDCA0A1B0GVM5 59 aa6.09□□□□□ -1.43
CD44-227ENST00000528086 Q6ZRX8 168 aa6.09□□□□□ -1.43
CD44-227ENST00000528086 TIMM17BO60830 172 aa6.08□□□□□ -1.44
CD44-227ENST00000528086 KRTDAPP60985 99 aa6.08□□□□□ -1.44
CD44-227ENST00000528086 ZNF815PA8K554 130 aa6.07□□□□□ -1.44
CD44-227ENST00000528086 LCE2AQ5TA79 106 aaPredicted RBP6.07□□□□□ -1.44
CD44-227ENST00000528086 ATOH7Q8N100 152 aa6.07□□□□□ -1.44
CD44-227ENST00000528086 GAGE2AQ6NT46 116 aa6.06□□□□□ -1.44
CD44-227ENST00000528086 PCP2Q8IVA1 136 aa6.06□□□□□ -1.44
CD44-227ENST00000528086 ST20-AS1Q8NBB2 130 aa6.06□□□□□ -1.44
CD44-227ENST00000528086 Q8NBF4 154 aa6.06□□□□□ -1.44
CD44-227ENST00000528086 TRAV23DV6A0A075B6W5 121 aa6.05□□□□□ -1.44
CD44-227ENST00000528086 ZNF73O43830 326 aaPredicted RBP6.05□□□□□ -1.44
CD44-227ENST00000528086 HIST3H2BBQ8N257 126 aa6.05□□□□□ -1.44
CD44-227ENST00000528086 MIEN1Q9BRT3 115 aa6.05□□□□□ -1.44
CD44-227ENST00000528086 S100A7L2Q5SY68 101 aa6.04□□□□□ -1.44
CD44-227ENST00000528086 SPANXCQ9NY87 97 aa6.04□□□□□ -1.44
CD44-227ENST00000528086 ZNF706Q9Y5V0 76 aaPredicted RBP6.04□□□□□ -1.44
CD44-227ENST00000528086 CTAG1AP78358 180 aa6.03□□□□□ -1.44
CD44-227ENST00000528086 HIST1H2BLQ99880 126 aa6.03□□□□□ -1.44
CD44-227ENST00000528086 SPANXDQ9BXN6 97 aa6.03□□□□□ -1.44
CD44-227ENST00000528086 IGLV7-46A0A075B6I9 117 aa6.02□□□□□ -1.45
CD44-227ENST00000528086 MOBPQ13875 183 aa6.01□□□□□ -1.45
CD44-227ENST00000528086 TPRXLQ17RH7 258 aa6.01□□□□□ -1.45
CD44-227ENST00000528086 SPAG11AQ6PDA7 123 aa6.01□□□□□ -1.45
CD44-227ENST00000528086 IGLV9-49A0A0B4J1Y8 123 aa6□□□□□ -1.45
CD44-227ENST00000528086 SPRR1BP22528 89 aa6□□□□□ -1.45
CD44-227ENST00000528086 AKR1D1P51857 326 aa5.99□□□□□ -1.45
CD44-227ENST00000528086 MUSTN1Q8IVN3 82 aa5.99□□□□□ -1.45
CD44-227ENST00000528086 Q8N377 158 aa5.99□□□□□ -1.45
CD44-227ENST00000528086 FAT4Q6V0I7 4981 aa5.99□□□□□ -1.45
CD44-227ENST00000528086 ELOF1P60002 83 aaKnown RBP5.98□□□□□ -1.45
CD44-227ENST00000528086 KRTAP13-3Q3SY46 172 aa5.98□□□□□ -1.45
CD44-227ENST00000528086 C6orf99Q4VX62 202 aa5.98□□□□□ -1.45
CD44-227ENST00000528086 SSBP3-AS1Q7Z2R9 100 aa5.98□□□□□ -1.45
CD44-227ENST00000528086 OR13C6PQ8NH95 151 aa5.98□□□□□ -1.45
CD44-227ENST00000528086 C20orf202A1L168 122 aa5.97□□□□□ -1.45
CD44-227ENST00000528086 SPINK1P00995 79 aa5.97□□□□□ -1.45
CD44-227ENST00000528086 LINC01547P58512 204 aaPredicted RBP5.97□□□□□ -1.45
CD44-227ENST00000528086 S100A12P80511 92 aa5.97□□□□□ -1.45
CD44-227ENST00000528086 JOSD1Q15040 202 aaPredicted RBP5.96□□□□□ -1.46
CD44-227ENST00000528086 SCGB1D4Q6XE38 83 aa5.96□□□□□ -1.46
CD44-227ENST00000528086 C5orf52A6NGY3 159 aa5.95□□□□□ -1.46
CD44-227ENST00000528086 IFITM1P13164 125 aa5.95□□□□□ -1.46
CD44-227ENST00000528086 FP248Q71RG6 208 aaPredicted RBP5.95□□□□□ -1.46
CD44-227ENST00000528086 SMIM29Q86T20 159 aa5.95□□□□□ -1.46
CD44-227ENST00000528086 LINC00518Q8N0U6 118 aa5.95□□□□□ -1.46
CD44-227ENST00000528086 KRTAP4-1Q9BYQ7 146 aa5.95□□□□□ -1.46
CD44-227ENST00000528086 LOC100996750A0A140TA64 210 aa5.94□□□□□ -1.46
CD44-227ENST00000528086 COX7BP24311 80 aa5.94□□□□□ -1.46
CD44-227ENST00000528086 RPS29P62273 56 aaKnown RBP5.94□□□□□ -1.46
CD44-227ENST00000528086 SNRPEP62304 92 aaKnown RBP5.94□□□□□ -1.46
CD44-227ENST00000528086 C4orf48Q5BLP8 95 aa5.94□□□□□ -1.46
CD44-227ENST00000528086 KRTAP4-6Q9BYQ5 205 aa5.94□□□□□ -1.46
CD44-227ENST00000528086 CBY1Q9Y3M2 126 aa5.94□□□□□ -1.46
CD44-227ENST00000528086 Q6ZVH6 145 aa5.93□□□□□ -1.46
CD44-227ENST00000528086 SMIM11BQ8TCY0 68 aa5.93□□□□□ -1.46
CD44-227ENST00000528086 CDIP1Q9H305 208 aa5.93□□□□□ -1.46
CD44-227ENST00000528086 DHRS4-AS1Q9P1J3 65 aa5.93□□□□□ -1.46
CD44-227ENST00000528086 A0A0G2JQZ4 141 aa5.92□□□□□ -1.46
CD44-227ENST00000528086 TRBV7-6A0A0J9YX20 115 aa5.92□□□□□ -1.46
CD44-227ENST00000528086 IGLV5-48A0A075B6I7 105 aa5.91□□□□□ -1.46
CD44-227ENST00000528086 S100A2P29034 98 aa5.91□□□□□ -1.46
CD44-227ENST00000528086 C9orf153Q5TBE3 101 aa5.91□□□□□ -1.46
CD44-227ENST00000528086 A6NDN8 102 aa5.9□□□□□ -1.46
CD44-227ENST00000528086 HINT1P49773 126 aaPredicted RBP5.9□□□□□ -1.46
CD44-227ENST00000528086 A0A1B0GWB2 263 aa5.89□□□□□ -1.47
CD44-227ENST00000528086 A4D1N5 150 aa5.89□□□□□ -1.47
CD44-227ENST00000528086 Q1RN00 199 aa5.89□□□□□ -1.47
CD44-227ENST00000528086 DEFB105AQ8NG35 78 aa5.89□□□□□ -1.47
CD44-227ENST00000528086 COPS9Q8WXC6 57 aa5.89□□□□□ -1.47
CD44-227ENST00000528086 SLC25A20O43772 301 aa5.88□□□□□ -1.47
CD44-227ENST00000528086 HRCT1Q6UXD1 115 aa5.88□□□□□ -1.47
CD44-227ENST00000528086 TEX49A0A1B0GTD5 131 aa5.87□□□□□ -1.47
CD44-227ENST00000528086 S100A6P06703 90 aa5.87□□□□□ -1.47
CD44-227ENST00000528086 ASB16-AS1Q495Z4 193 aa5.87□□□□□ -1.47
CD44-227ENST00000528086 TRAV13-2A0A0B4J235 113 aa5.86□□□□□ -1.47
CD44-227ENST00000528086 COX8AP10176 69 aa5.86□□□□□ -1.47
CD44-227ENST00000528086 TAL2Q16559 108 aa5.86□□□□□ -1.47
CD44-227ENST00000528086 LAMTOR3Q9UHA4 124 aa5.86□□□□□ -1.47
CD44-227ENST00000528086 SCGB1D1O95968 90 aa5.85□□□□□ -1.47
CD44-227ENST00000528086 XP32Q5T750 250 aa5.85□□□□□ -1.47
CD44-227ENST00000528086 LCE2CQ5TA81 110 aa5.85□□□□□ -1.47
CD44-227ENST00000528086 LINC00575Q6W349 94 aa5.85□□□□□ -1.47
CD44-227ENST00000528086 DLEU1O43261 78 aa5.84□□□□□ -1.47
CD44-227ENST00000528086 C2orf91Q6ZV80 131 aa5.84□□□□□ -1.47
CD44-227ENST00000528086 C12orf57Q99622 126 aa5.84□□□□□ -1.47
CD44-227ENST00000528086 HSBP1L1C9JCN9 74 aa5.83□□□□□ -1.48
CD44-227ENST00000528086 CD164Q04900 197 aa5.83□□□□□ -1.48
CD44-227ENST00000528086 SLC25A34Q6PIV7 304 aa5.83□□□□□ -1.48
CD44-227ENST00000528086 C14orf144Q96I85 54 aa5.83□□□□□ -1.48
CD44-227ENST00000528086 H7C2G1 150 aa5.82□□□□□ -1.48
CD44-227ENST00000528086 Q5XG85 94 aa5.82□□□□□ -1.48
CD44-227ENST00000528086 CFC1BP0CG36 223 aa5.81□□□□□ -1.48
CD44-227ENST00000528086 CFC1P0CG37 223 aa5.81□□□□□ -1.48
CD44-227ENST00000528086 KRTAP19-2Q3LHN2 52 aa5.81□□□□□ -1.48
CD44-227ENST00000528086 C1orf195Q5TG92 126 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms