RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MUSTN1Q8IVN3 82 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 LINC00308Q8TCZ7 52 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 PPDPFQ9H3Y8 114 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 NCR3O14931 201 aa6.18□□□□□ -1.42
VPS28-204ENST00000526054 KRTAP10-8P60410 259 aa6.18□□□□□ -1.42
VPS28-204ENST00000526054 NPC2P61916 151 aa6.18□□□□□ -1.42
VPS28-204ENST00000526054 BATFQ16520 125 aa6.18□□□□□ -1.42
VPS28-204ENST00000526054 IGLV1-50A0A075B6I6 118 aa6.17□□□□□ -1.42
VPS28-204ENST00000526054 BCE1O60756 84 aa6.17□□□□□ -1.42
VPS28-204ENST00000526054 NDUFC2O95298 119 aa6.17□□□□□ -1.42
VPS28-204ENST00000526054 DIRC1Q969H9 104 aa6.17□□□□□ -1.42
VPS28-204ENST00000526054 TRBV10-2A0A0K0K1G8 114 aa6.16□□□□□ -1.42
VPS28-204ENST00000526054 A6NDN8 102 aa6.16□□□□□ -1.42
VPS28-204ENST00000526054 RPL28P46779 137 aaKnown RBP6.16□□□□□ -1.42
VPS28-204ENST00000526054 FXYD2P54710 66 aa6.16□□□□□ -1.42
VPS28-204ENST00000526054 SOSTDC1Q6X4U4 206 aa6.16□□□□□ -1.42
VPS28-204ENST00000526054 SNHG12Q9BXW3 62 aa6.16□□□□□ -1.42
VPS28-204ENST00000526054 A4D1N5 150 aa6.15□□□□□ -1.42
VPS28-204ENST00000526054 PRYO14603 147 aa6.15□□□□□ -1.42
VPS28-204ENST00000526054 ZNF861PO60384 105 aa6.15□□□□□ -1.42
VPS28-204ENST00000526054 UBE2AP49459 152 aa6.15□□□□□ -1.42
VPS28-204ENST00000526054 TMEM126AQ9H061 195 aa6.15□□□□□ -1.42
VPS28-204ENST00000526054 LPAP08519 4548 aa6.14□□□□□ -1.43
VPS28-204ENST00000526054 TRBV10-3A0A0K0K1G6 114 aa6.14□□□□□ -1.43
VPS28-204ENST00000526054 S100A7L2Q5SY68 101 aa6.14□□□□□ -1.43
VPS28-204ENST00000526054 NHP2Q9NX24 153 aaKnown RBP6.14□□□□□ -1.43
VPS28-204ENST00000526054 H0Y9J4 135 aa6.13□□□□□ -1.43
VPS28-204ENST00000526054 EIF4EBP3O60516 100 aaPredicted RBP6.13□□□□□ -1.43
VPS28-204ENST00000526054 COL5A1-AS1Q5SY13 56 aa6.13□□□□□ -1.43
VPS28-204ENST00000526054 FAM19A1Q7Z5A9 133 aa6.13□□□□□ -1.43
VPS28-204ENST00000526054 KCNQ1DNQ9H478 68 aa6.13□□□□□ -1.43
VPS28-204ENST00000526054 A0A0B4J2C4 111 aa6.12□□□□□ -1.43
VPS28-204ENST00000526054 A0A1B0GWB2 263 aa6.12□□□□□ -1.43
VPS28-204ENST00000526054 RAB37Q96AX2 223 aa6.12□□□□□ -1.43
VPS28-204ENST00000526054 CBY1Q9Y3M2 126 aa6.12□□□□□ -1.43
VPS28-204ENST00000526054 K7ERJ3 54 aa6.11□□□□□ -1.43
VPS28-204ENST00000526054 IGLV6-57P01721 117 aa6.11□□□□□ -1.43
VPS28-204ENST00000526054 CFC1BP0CG36 223 aa6.11□□□□□ -1.43
VPS28-204ENST00000526054 CFC1P0CG37 223 aa6.11□□□□□ -1.43
VPS28-204ENST00000526054 TRAV23DV6A0A075B6W5 121 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 TRAV13-2A0A0B4J235 113 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 ETDCA0A1B0GVM5 59 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 SPRR1AP35321 89 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 PRLHP81277 87 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 KRTAP13-1Q8IUC0 172 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 LINC00337Q8N6G1 96 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 OR13C6PQ8NH95 151 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 PRO1854Q9UHT4 67 aa6.1□□□□□ -1.43
VPS28-204ENST00000526054 RPL13AP40429 203 aaKnown RBP6.08□□□□□ -1.44
VPS28-204ENST00000526054 PRR26Q8N8Z3 221 aa6.08□□□□□ -1.44
VPS28-204ENST00000526054 Q1RN00 199 aa6.07□□□□□ -1.44
VPS28-204ENST00000526054 HIGD2AQ9BW72 106 aa6.07□□□□□ -1.44
VPS28-204ENST00000526054 KRTAP4-16G5E9R7 235 aaPredicted RBP6.06□□□□□ -1.44
VPS28-204ENST00000526054 H7C2G1 150 aa6.06□□□□□ -1.44
VPS28-204ENST00000526054 TAX1BP3O14907 124 aa6.06□□□□□ -1.44
VPS28-204ENST00000526054 ZNF73O43830 326 aaPredicted RBP6.06□□□□□ -1.44
VPS28-204ENST00000526054 B5MCH6 92 aa6.05□□□□□ -1.44
VPS28-204ENST00000526054 TSPAN13O95857 204 aa6.05□□□□□ -1.44
VPS28-204ENST00000526054 KRTAP1-4P0C5Y4 121 aa6.05□□□□□ -1.44
VPS28-204ENST00000526054 C9orf118A6NHY6 69 aa6.04□□□□□ -1.44
VPS28-204ENST00000526054 PSMB2P49721 201 aa6.04□□□□□ -1.44
VPS28-204ENST00000526054 Q6ZRX8 168 aa6.04□□□□□ -1.44
VPS28-204ENST00000526054 ZNF706Q9Y5V0 76 aaPredicted RBP6.04□□□□□ -1.44
VPS28-204ENST00000526054 H3BUT2 72 aa6.03□□□□□ -1.44
VPS28-204ENST00000526054 C6orf99Q4VX62 202 aa6.02□□□□□ -1.45
VPS28-204ENST00000526054 LYRM7Q5U5X0 104 aa6.02□□□□□ -1.45
VPS28-204ENST00000526054 SMCR5Q8TEV8 140 aa6.02□□□□□ -1.45
VPS28-204ENST00000526054 COX6CP09669 75 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 CRYGAP11844 174 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 COX7BP24311 80 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 FAM229BQ4G0N7 80 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 SMIM11BQ8TCY0 68 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 SPRR4Q96PI1 79 aa6.01□□□□□ -1.45
VPS28-204ENST00000526054 NAA38Q9BRA0 125 aaKnown RBP6.01□□□□□ -1.45
VPS28-204ENST00000526054 A0A1W2PPM0 123 aa6□□□□□ -1.45
VPS28-204ENST00000526054 TRIAP1O43715 76 aa6□□□□□ -1.45
VPS28-204ENST00000526054 FABP2P12104 132 aa6□□□□□ -1.45
VPS28-204ENST00000526054 ELOF1P60002 83 aaKnown RBP6□□□□□ -1.45
VPS28-204ENST00000526054 Q9BRP9 147 aa6□□□□□ -1.45
VPS28-204ENST00000526054 TRBV7-6A0A0J9YX20 115 aa5.99□□□□□ -1.45
VPS28-204ENST00000526054 SCGB1C2P0DMR2 95 aa5.99□□□□□ -1.45
VPS28-204ENST00000526054 PRR4Q16378 134 aa5.99□□□□□ -1.45
VPS28-204ENST00000526054 DHRS4-AS1Q9P1J3 65 aa5.99□□□□□ -1.45
VPS28-204ENST00000526054 A0A087X002 238 aa5.98□□□□□ -1.45
VPS28-204ENST00000526054 ERC2-IT1O76042 136 aa5.98□□□□□ -1.45
VPS28-204ENST00000526054 VAMP3Q15836 100 aa5.98□□□□□ -1.45
VPS28-204ENST00000526054 ANAPC11Q9NYG5 84 aa5.98□□□□□ -1.45
VPS28-204ENST00000526054 H0YGX0 51 aa5.97□□□□□ -1.45
VPS28-204ENST00000526054 TYMSOSQ8TAI1 123 aa5.97□□□□□ -1.45
VPS28-204ENST00000526054 TRBV20-1A0A075B6N2 111 aa5.96□□□□□ -1.46
VPS28-204ENST00000526054 A0A1B0GV90 55 aa5.96□□□□□ -1.46
VPS28-204ENST00000526054 LINC00483Q53H64 154 aa5.96□□□□□ -1.46
VPS28-204ENST00000526054 GAGE2AQ6NT46 116 aa5.96□□□□□ -1.46
VPS28-204ENST00000526054 SPCS1Q9Y6A9 102 aa5.96□□□□□ -1.46
VPS28-204ENST00000526054 GTF2H5Q6ZYL4 71 aa5.95□□□□□ -1.46
VPS28-204ENST00000526054 MUC2Q02817 5179 aa5.94□□□□□ -1.46
VPS28-204ENST00000526054 K7EP34 96 aa5.94□□□□□ -1.46
VPS28-204ENST00000526054 SLC25A20O43772 301 aa5.94□□□□□ -1.46
VPS28-204ENST00000526054 ATXN8Q156A1 80 aa5.94□□□□□ -1.46
VPS28-204ENST00000526054 KRTAP13-2Q52LG2 175 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms