RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RAB37Q96AX2 223 aa10□□□□□ -0.81
LSM1-204ENST00000522515 BCE1O60756 84 aa9.99□□□□□ -0.81
LSM1-204ENST00000522515 SPRR1AP35321 89 aa9.99□□□□□ -0.81
LSM1-204ENST00000522515 RPL13AP40429 203 aaKnown RBP9.99□□□□□ -0.81
LSM1-204ENST00000522515 VPS13BQ7Z7G8 4022 aa9.99□□□□□ -0.81
LSM1-204ENST00000522515 M0R143 59 aa9.98□□□□□ -0.81
LSM1-204ENST00000522515 PLA2G1BP04054 148 aaKnown RBP9.98□□□□□ -0.81
LSM1-204ENST00000522515 A0A1B0GWB2 263 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 KRTAP4-16G5E9R7 235 aaPredicted RBP9.97□□□□□ -0.81
LSM1-204ENST00000522515 ZNF73O43830 326 aaPredicted RBP9.97□□□□□ -0.81
LSM1-204ENST00000522515 K7ERJ3 54 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 IGLV7-43P04211 117 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 SMIM11BQ8TCY0 68 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 PRO1854Q9UHT4 67 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 CBY1Q9Y3M2 126 aa9.97□□□□□ -0.81
LSM1-204ENST00000522515 FAM19A1Q7Z5A9 133 aa9.96□□□□□ -0.82
LSM1-204ENST00000522515 H7C2G1 150 aa9.95□□□□□ -0.82
LSM1-204ENST00000522515 ETDCA0A1B0GVM5 59 aa9.94□□□□□ -0.82
LSM1-204ENST00000522515 PRLHP81277 87 aa9.94□□□□□ -0.82
LSM1-204ENST00000522515 C6orf99Q4VX62 202 aa9.94□□□□□ -0.82
LSM1-204ENST00000522515 DIRC1Q969H9 104 aa9.94□□□□□ -0.82
LSM1-204ENST00000522515 HERC2O95714 4834 aa9.94□□□□□ -0.82
LSM1-204ENST00000522515 KRTAP13-1Q8IUC0 172 aa9.93□□□□□ -0.82
LSM1-204ENST00000522515 SRRM2Q9UQ35 2752 aaKnown RBP9.93□□□□□ -0.82
LSM1-204ENST00000522515 B5MCH6 92 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 UBE2AP49459 152 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 BATFQ16520 125 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 SNHG12Q9BXW3 62 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 KRTAP4-5Q9BYR2 181 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 ZNF861PO60384 105 aa9.92□□□□□ -0.82
LSM1-204ENST00000522515 RPL28P46779 137 aaKnown RBP9.91□□□□□ -0.82
LSM1-204ENST00000522515 Q1RN00 199 aa9.9□□□□□ -0.82
LSM1-204ENST00000522515 Q6ZRX8 168 aa9.9□□□□□ -0.82
LSM1-204ENST00000522515 H0Y9J4 135 aa9.89□□□□□ -0.83
LSM1-204ENST00000522515 ELOF1P60002 83 aaKnown RBP9.88□□□□□ -0.83
LSM1-204ENST00000522515 TRBV7-6A0A0J9YX20 115 aa9.88□□□□□ -0.83
LSM1-204ENST00000522515 TSPAN13O95857 204 aa9.88□□□□□ -0.83
LSM1-204ENST00000522515 COX7BP24311 80 aa9.88□□□□□ -0.83
LSM1-204ENST00000522515 HIGD2AQ9BW72 106 aa9.88□□□□□ -0.83
LSM1-204ENST00000522515 Q9BRP9 147 aa9.87□□□□□ -0.83
LSM1-204ENST00000522515 SPINK6Q6UWN8 80 aa9.86□□□□□ -0.83
LSM1-204ENST00000522515 SMCR5Q8TEV8 140 aa9.86□□□□□ -0.83
LSM1-204ENST00000522515 VAMP3Q15836 100 aa9.84□□□□□ -0.83
LSM1-204ENST00000522515 TRIAP1O43715 76 aa9.84□□□□□ -0.83
LSM1-204ENST00000522515 ERC2-IT1O76042 136 aa9.83□□□□□ -0.84
LSM1-204ENST00000522515 PSMB2P49721 201 aa9.82□□□□□ -0.84
LSM1-204ENST00000522515 DHRS4-AS1Q9P1J3 65 aa9.81□□□□□ -0.84
LSM1-204ENST00000522515 INAFM2P0DMQ5 153 aa9.8□□□□□ -0.84
LSM1-204ENST00000522515 LINC00575Q6W349 94 aa9.8□□□□□ -0.84
LSM1-204ENST00000522515 NAA38Q9BRA0 125 aaKnown RBP9.8□□□□□ -0.84
LSM1-204ENST00000522515 H0YGX0 51 aa9.79□□□□□ -0.84
LSM1-204ENST00000522515 TAX1BP3O14907 124 aa9.78□□□□□ -0.84
LSM1-204ENST00000522515 COL5A1-AS1Q5SY13 56 aa9.78□□□□□ -0.84
LSM1-204ENST00000522515 COX6CP09669 75 aa9.77□□□□□ -0.85
LSM1-204ENST00000522515 FAM218AQ96MZ4 157 aa9.77□□□□□ -0.85
LSM1-204ENST00000522515 PKHD1L1Q86WI1 4243 aa9.77□□□□□ -0.85
LSM1-204ENST00000522515 ST20-AS1Q8NBB2 130 aa9.76□□□□□ -0.85
LSM1-204ENST00000522515 CLEC2BQ92478 149 aa9.76□□□□□ -0.85
LSM1-204ENST00000522515 SLC25A20O43772 301 aa9.75□□□□□ -0.85
LSM1-204ENST00000522515 hADV29S1A0JD25 119 aa9.75□□□□□ -0.85
LSM1-204ENST00000522515 KRTAP1-4P0C5Y4 121 aa9.75□□□□□ -0.85
LSM1-204ENST00000522515 SPRR4Q96PI1 79 aa9.75□□□□□ -0.85
LSM1-204ENST00000522515 ABCA13Q86UQ4 5058 aa9.75□□□□□ -0.85
LSM1-204ENST00000522515 H3BUT2 72 aa9.74□□□□□ -0.85
LSM1-204ENST00000522515 SCGB1C2P0DMR2 95 aa9.74□□□□□ -0.85
LSM1-204ENST00000522515 C9orf118A6NHY6 69 aa9.73□□□□□ -0.85
LSM1-204ENST00000522515 ANAPC11Q9NYG5 84 aa9.73□□□□□ -0.85
LSM1-204ENST00000522515 ZNF706Q9Y5V0 76 aaPredicted RBP9.72□□□□□ -0.85
LSM1-204ENST00000522515 FLG2Q5D862 2391 aaPredicted RBP9.72□□□□□ -0.85
LSM1-204ENST00000522515 A0A1B0GV90 55 aa9.71□□□□□ -0.85
LSM1-204ENST00000522515 GAGE2AQ6NT46 116 aa9.71□□□□□ -0.85
LSM1-204ENST00000522515 Q6ZQY7 126 aa9.71□□□□□ -0.86
LSM1-204ENST00000522515 A0A1B0GX51 115 aa9.69□□□□□ -0.86
LSM1-204ENST00000522515 SNCGO76070 127 aa9.69□□□□□ -0.86
LSM1-204ENST00000522515 DEFB105AQ8NG35 78 aa9.69□□□□□ -0.86
LSM1-204ENST00000522515 LRP1Q07954 4544 aaKnown RBP9.69□□□□□ -0.86
LSM1-204ENST00000522515 LINC01547P58512 204 aaPredicted RBP9.68□□□□□ -0.86
LSM1-204ENST00000522515 LINC00483Q53H64 154 aa9.68□□□□□ -0.86
LSM1-204ENST00000522515 MYCBP2O75592 4640 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 A0A1W2PPM0 123 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 LST1O00453 97 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.67□□□□□ -0.86
LSM1-204ENST00000522515 IGLV5-48A0A075B6I7 105 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 A0A087X002 238 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 TCL1BO95988 128 aa9.67□□□□□ -0.86
LSM1-204ENST00000522515 SPRR1BP22528 89 aa9.66□□□□□ -0.86
LSM1-204ENST00000522515 LINC01600Q96MT4 127 aa9.66□□□□□ -0.86
LSM1-204ENST00000522515 TEX49A0A1B0GTD5 131 aa9.65□□□□□ -0.86
LSM1-204ENST00000522515 FAM229BQ4G0N7 80 aa9.65□□□□□ -0.86
LSM1-204ENST00000522515 LYRM7Q5U5X0 104 aa9.65□□□□□ -0.86
LSM1-204ENST00000522515 Q8N377 158 aa9.65□□□□□ -0.86
LSM1-204ENST00000522515 PRR26Q8N8Z3 221 aa9.65□□□□□ -0.86
LSM1-204ENST00000522515 TRACP01848 142 aa9.64□□□□□ -0.87
LSM1-204ENST00000522515 FAT3Q8TDW7 4589 aa9.64□□□□□ -0.87
LSM1-204ENST00000522515 DNAL4O96015 105 aa9.63□□□□□ -0.87
LSM1-204ENST00000522515 CRYGAP11844 174 aa9.63□□□□□ -0.87
LSM1-204ENST00000522515 FABP2P12104 132 aa9.63□□□□□ -0.87
LSM1-204ENST00000522515 ATXN8Q156A1 80 aa9.63□□□□□ -0.87
LSM1-204ENST00000522515 OXTP01178 125 aa9.62□□□□□ -0.87
LSM1-204ENST00000522515 KRTAP13-2Q52LG2 175 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms