RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 BCE1O60756 84 aa12.92□□□□□ -0.34
LSM6-207ENST00000515311 KRTAP10-4P60372 401 aaPredicted RBP12.92□□□□□ -0.34
LSM6-207ENST00000515311 FAT1Q14517 4588 aa12.92□□□□□ -0.34
LSM6-207ENST00000515311 KRTAP17-1Q9BYP8 105 aa12.92□□□□□ -0.34
LSM6-207ENST00000515311 M0R143 59 aa12.91□□□□□ -0.34
LSM6-207ENST00000515311 SPRR1AP35321 89 aa12.91□□□□□ -0.34
LSM6-207ENST00000515311 BVES-AS1Q5T3Y7 98 aa12.9□□□□□ -0.34
LSM6-207ENST00000515311 RAB37Q96AX2 223 aa12.9□□□□□ -0.34
LSM6-207ENST00000515311 ZNF73O43830 326 aaPredicted RBP12.88□□□□□ -0.35
LSM6-207ENST00000515311 IGLV7-43P04211 117 aa12.88□□□□□ -0.35
LSM6-207ENST00000515311 RPL13AP40429 203 aaKnown RBP12.88□□□□□ -0.35
LSM6-207ENST00000515311 VPS13BQ7Z7G8 4022 aa12.88□□□□□ -0.35
LSM6-207ENST00000515311 SRRM2Q9UQ35 2752 aaKnown RBP12.88□□□□□ -0.35
LSM6-207ENST00000515311 A0A1B0GWB2 263 aa12.87□□□□□ -0.35
LSM6-207ENST00000515311 KRTAP4-16G5E9R7 235 aaPredicted RBP12.87□□□□□ -0.35
LSM6-207ENST00000515311 NHP2Q9NX24 153 aaKnown RBP12.87□□□□□ -0.35
LSM6-207ENST00000515311 HINT1P49773 126 aaPredicted RBP12.86□□□□□ -0.35
LSM6-207ENST00000515311 PRO1854Q9UHT4 67 aa12.86□□□□□ -0.35
LSM6-207ENST00000515311 ETDCA0A1B0GVM5 59 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 H0Y9J4 135 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 FAM19A1Q7Z5A9 133 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 KRTAP13-1Q8IUC0 172 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 SMIM11BQ8TCY0 68 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 DIRC1Q969H9 104 aa12.84□□□□□ -0.35
LSM6-207ENST00000515311 HERC2O95714 4834 aa12.83□□□□□ -0.36
LSM6-207ENST00000515311 RPL28P46779 137 aaKnown RBP12.83□□□□□ -0.36
LSM6-207ENST00000515311 UBE2AP49459 152 aa12.82□□□□□ -0.36
LSM6-207ENST00000515311 C6orf99Q4VX62 202 aa12.82□□□□□ -0.36
LSM6-207ENST00000515311 TRBV7-6A0A0J9YX20 115 aa12.81□□□□□ -0.36
LSM6-207ENST00000515311 B5MCH6 92 aa12.81□□□□□ -0.36
LSM6-207ENST00000515311 ZNF861PO60384 105 aa12.81□□□□□ -0.36
LSM6-207ENST00000515311 K7ERJ3 54 aa12.8□□□□□ -0.36
LSM6-207ENST00000515311 Q6ZRX8 168 aa12.8□□□□□ -0.36
LSM6-207ENST00000515311 PRLHP81277 87 aa12.79□□□□□ -0.36
LSM6-207ENST00000515311 H7C2G1 150 aa12.78□□□□□ -0.36
LSM6-207ENST00000515311 SPINK6Q6UWN8 80 aa12.78□□□□□ -0.36
LSM6-207ENST00000515311 ELOF1P60002 83 aaKnown RBP12.77□□□□□ -0.37
LSM6-207ENST00000515311 SMCPP49901 116 aaPredicted RBP12.76□□□□□ -0.37
LSM6-207ENST00000515311 Q1RN00 199 aa12.76□□□□□ -0.37
LSM6-207ENST00000515311 COX7BP24311 80 aa12.75□□□□□ -0.37
LSM6-207ENST00000515311 VAMP3Q15836 100 aa12.75□□□□□ -0.37
LSM6-207ENST00000515311 C4orf48Q5BLP8 95 aa12.74□□□□□ -0.37
LSM6-207ENST00000515311 KRTAP4-5Q9BYR2 181 aa12.74□□□□□ -0.37
LSM6-207ENST00000515311 BATFQ16520 125 aa12.73□□□□□ -0.37
LSM6-207ENST00000515311 PCP4L1A6NKN8 68 aa12.72□□□□□ -0.37
LSM6-207ENST00000515311 Q9BRP9 147 aa12.72□□□□□ -0.37
LSM6-207ENST00000515311 HIGD2AQ9BW72 106 aa12.72□□□□□ -0.37
LSM6-207ENST00000515311 TSPAN13O95857 204 aa12.71□□□□□ -0.37
LSM6-207ENST00000515311 SMCR5Q8TEV8 140 aa12.71□□□□□ -0.37
LSM6-207ENST00000515311 DHRS4-AS1Q9P1J3 65 aa12.71□□□□□ -0.37
LSM6-207ENST00000515311 INAFM2P0DMQ5 153 aa12.69□□□□□ -0.38
LSM6-207ENST00000515311 TRIAP1O43715 76 aa12.67□□□□□ -0.38
LSM6-207ENST00000515311 SNHG12Q9BXW3 62 aa12.67□□□□□ -0.38
LSM6-207ENST00000515311 H0YGX0 51 aa12.66□□□□□ -0.38
LSM6-207ENST00000515311 PKHD1L1Q86WI1 4243 aa12.65□□□□□ -0.38
LSM6-207ENST00000515311 PSMB2P49721 201 aa12.65□□□□□ -0.38
LSM6-207ENST00000515311 ERC2-IT1O76042 136 aa12.64□□□□□ -0.39
LSM6-207ENST00000515311 LINC00575Q6W349 94 aa12.64□□□□□ -0.39
LSM6-207ENST00000515311 SLC25A20O43772 301 aa12.63□□□□□ -0.39
LSM6-207ENST00000515311 COX6CP09669 75 aa12.63□□□□□ -0.39
LSM6-207ENST00000515311 ZNF706Q9Y5V0 76 aaPredicted RBP12.62□□□□□ -0.39
LSM6-207ENST00000515311 hADV29S1A0JD25 119 aa12.59□□□□□ -0.39
LSM6-207ENST00000515311 SPRR4Q96PI1 79 aa12.59□□□□□ -0.39
LSM6-207ENST00000515311 KRTAP1-4P0C5Y4 121 aa12.58□□□□□ -0.4
LSM6-207ENST00000515311 SNCGO76070 127 aa12.57□□□□□ -0.4
LSM6-207ENST00000515311 COL5A1-AS1Q5SY13 56 aa12.57□□□□□ -0.4
LSM6-207ENST00000515311 FLG2Q5D862 2391 aaPredicted RBP12.56□□□□□ -0.4
LSM6-207ENST00000515311 A0A1B0GX51 115 aa12.56□□□□□ -0.4
LSM6-207ENST00000515311 TAX1BP3O14907 124 aa12.56□□□□□ -0.4
LSM6-207ENST00000515311 FAM218AQ96MZ4 157 aa12.56□□□□□ -0.4
LSM6-207ENST00000515311 ST20-AS1Q8NBB2 130 aa12.55□□□□□ -0.4
LSM6-207ENST00000515311 ABCA13Q86UQ4 5058 aa12.54□□□□□ -0.4
LSM6-207ENST00000515311 C9orf118A6NHY6 69 aa12.54□□□□□ -0.4
LSM6-207ENST00000515311 SCGB1C2P0DMR2 95 aa12.54□□□□□ -0.4
LSM6-207ENST00000515311 LINC00483Q53H64 154 aa12.54□□□□□ -0.4
LSM6-207ENST00000515311 CLEC2BQ92478 149 aa12.54□□□□□ -0.4
LSM6-207ENST00000515311 NAA38Q9BRA0 125 aaKnown RBP12.54□□□□□ -0.4
LSM6-207ENST00000515311 FAM229BQ4G0N7 80 aa12.53□□□□□ -0.4
LSM6-207ENST00000515311 H3BUT2 72 aa12.52□□□□□ -0.41
LSM6-207ENST00000515311 LYRM7Q5U5X0 104 aa12.52□□□□□ -0.41
LSM6-207ENST00000515311 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.52□□□□□ -0.41
LSM6-207ENST00000515311 IGLV5-48A0A075B6I7 105 aa12.51□□□□□ -0.41
LSM6-207ENST00000515311 GAGE2AQ6NT46 116 aa12.51□□□□□ -0.41
LSM6-207ENST00000515311 Q6ZQY7 126 aa12.51□□□□□ -0.41
LSM6-207ENST00000515311 LINC01600Q96MT4 127 aa12.51□□□□□ -0.41
LSM6-207ENST00000515311 OXTP01178 125 aa12.5□□□□□ -0.41
LSM6-207ENST00000515311 SPRR1BP22528 89 aa12.5□□□□□ -0.41
LSM6-207ENST00000515311 TEX49A0A1B0GTD5 131 aa12.48□□□□□ -0.41
LSM6-207ENST00000515311 LST1O00453 97 aa12.48□□□□□ -0.41
LSM6-207ENST00000515311 ANAPC11Q9NYG5 84 aa12.48□□□□□ -0.41
LSM6-207ENST00000515311 LINC01547P58512 204 aaPredicted RBP12.47□□□□□ -0.41
LSM6-207ENST00000515311 MYCBP2O75592 4640 aa12.47□□□□□ -0.41
LSM6-207ENST00000515311 A0A1W2PPM0 123 aa12.46□□□□□ -0.41
LSM6-207ENST00000515311 TRACP01848 142 aa12.46□□□□□ -0.41
LSM6-207ENST00000515311 CRYGAP11844 174 aa12.46□□□□□ -0.41
LSM6-207ENST00000515311 OCIAD2Q56VL3 154 aa12.46□□□□□ -0.41
LSM6-207ENST00000515311 DEFB105AQ8NG35 78 aa12.46□□□□□ -0.41
LSM6-207ENST00000515311 A0A087X002 238 aa12.45□□□□□ -0.42
LSM6-207ENST00000515311 KRTAP29-1A8MX34 341 aaPredicted RBP12.45□□□□□ -0.42
LSM6-207ENST00000515311 DNAL4O96015 105 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms