RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 HSD52Q0P140 79 aa18.05■□□□□ 0.48
LIMCH1-211ENST00000509638 TRAV13-2A0A0B4J235 113 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 PCLOQ9Y6V0 5065 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 MYCBP2O75592 4640 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 ZNF861PO60384 105 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 RPL28P46779 137 aaKnown RBP18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 SPINK6Q6UWN8 80 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 CBY1Q9Y3M2 126 aa18.04■□□□□ 0.48
LIMCH1-211ENST00000509638 KRTAP13-1Q8IUC0 172 aa18.03■□□□□ 0.48
LIMCH1-211ENST00000509638 ETDCA0A1B0GVM5 59 aa18.01■□□□□ 0.47
LIMCH1-211ENST00000509638 KRTAP4-16G5E9R7 235 aaPredicted RBP18.01■□□□□ 0.47
LIMCH1-211ENST00000509638 ZNF73O43830 326 aaPredicted RBP18.01■□□□□ 0.47
LIMCH1-211ENST00000509638 FXYD2P54710 66 aa18■□□□□ 0.47
LIMCH1-211ENST00000509638 TSTD3H0UI37 97 aa17.99■□□□□ 0.47
LIMCH1-211ENST00000509638 DIRC1Q969H9 104 aa17.98■□□□□ 0.47
LIMCH1-211ENST00000509638 TMEM238LA0A1B0GVL6 79 aa17.97■□□□□ 0.47
LIMCH1-211ENST00000509638 A6NJY4 79 aa17.97■□□□□ 0.47
LIMCH1-211ENST00000509638 H0Y9J4 135 aa17.96■□□□□ 0.46
LIMCH1-211ENST00000509638 CFC1BP0CG36 223 aa17.95■□□□□ 0.46
LIMCH1-211ENST00000509638 CFC1P0CG37 223 aa17.95■□□□□ 0.46
LIMCH1-211ENST00000509638 RPL13AP40429 203 aaKnown RBP17.95■□□□□ 0.46
LIMCH1-211ENST00000509638 B5MCH6 92 aa17.94■□□□□ 0.46
LIMCH1-211ENST00000509638 RAB37Q96AX2 223 aa17.92■□□□□ 0.46
LIMCH1-211ENST00000509638 A0A0B4J2C4 111 aa17.91■□□□□ 0.46
LIMCH1-211ENST00000509638 C6orf99Q4VX62 202 aa17.91■□□□□ 0.46
LIMCH1-211ENST00000509638 Q6ZRX8 168 aa17.91■□□□□ 0.46
LIMCH1-211ENST00000509638 HIGD2AQ9BW72 106 aa17.91■□□□□ 0.46
LIMCH1-211ENST00000509638 SMIM11BQ8TCY0 68 aa17.9■□□□□ 0.46
LIMCH1-211ENST00000509638 LRP1Q07954 4544 aaKnown RBP17.89■□□□□ 0.45
LIMCH1-211ENST00000509638 HINT1P49773 126 aaPredicted RBP17.89■□□□□ 0.45
LIMCH1-211ENST00000509638 CTAG1AP78358 180 aa17.87■□□□□ 0.45
LIMCH1-211ENST00000509638 NHP2Q9NX24 153 aaKnown RBP17.87■□□□□ 0.45
LIMCH1-211ENST00000509638 SMCR5Q8TEV8 140 aa17.85■□□□□ 0.45
LIMCH1-211ENST00000509638 FAT3Q8TDW7 4589 aa17.84■□□□□ 0.45
LIMCH1-211ENST00000509638 H7C2G1 150 aa17.84■□□□□ 0.45
LIMCH1-211ENST00000509638 Q9BRP9 147 aa17.84■□□□□ 0.45
LIMCH1-211ENST00000509638 ELOF1P60002 83 aaKnown RBP17.83■□□□□ 0.45
LIMCH1-211ENST00000509638 COX7BP24311 80 aa17.83■□□□□ 0.44
LIMCH1-211ENST00000509638 BVES-AS1Q5T3Y7 98 aa17.83■□□□□ 0.44
LIMCH1-211ENST00000509638 K7ERJ3 54 aa17.81■□□□□ 0.44
LIMCH1-211ENST00000509638 PRO1854Q9UHT4 67 aa17.81■□□□□ 0.44
LIMCH1-211ENST00000509638 TRBV7-6A0A0J9YX20 115 aa17.8■□□□□ 0.44
LIMCH1-211ENST00000509638 A0A1B0GWB2 263 aa17.78■□□□□ 0.44
LIMCH1-211ENST00000509638 M0R143 59 aa17.78■□□□□ 0.44
LIMCH1-211ENST00000509638 KRTAP1-4P0C5Y4 121 aa17.78■□□□□ 0.44
LIMCH1-211ENST00000509638 ERC2-IT1O76042 136 aa17.76■□□□□ 0.43
LIMCH1-211ENST00000509638 Q1RN00 199 aa17.76■□□□□ 0.43
LIMCH1-211ENST00000509638 OXTP01178 125 aa17.73■□□□□ 0.43
LIMCH1-211ENST00000509638 DHRS4-AS1Q9P1J3 65 aa17.73■□□□□ 0.43
LIMCH1-211ENST00000509638 KRTAP29-1A8MX34 341 aaPredicted RBP17.71■□□□□ 0.43
LIMCH1-211ENST00000509638 VAMP3Q15836 100 aa17.71■□□□□ 0.43
LIMCH1-211ENST00000509638 LINC01600Q96MT4 127 aa17.71■□□□□ 0.43
LIMCH1-211ENST00000509638 ZNF706Q9Y5V0 76 aaPredicted RBP17.7■□□□□ 0.42
LIMCH1-211ENST00000509638 SPRR4Q96PI1 79 aa17.7■□□□□ 0.42
LIMCH1-211ENST00000509638 ANAPC11Q9NYG5 84 aa17.68■□□□□ 0.42
LIMCH1-211ENST00000509638 DMBT1Q9UGM3 2413 aaPredicted RBP17.68■□□□□ 0.42
LIMCH1-211ENST00000509638 TSPAN13O95857 204 aa17.64■□□□□ 0.41
LIMCH1-211ENST00000509638 PRR26Q8N8Z3 221 aa17.63■□□□□ 0.41
LIMCH1-211ENST00000509638 ST20-AS1Q8NBB2 130 aa17.63■□□□□ 0.41
LIMCH1-211ENST00000509638 BATFQ16520 125 aa17.62■□□□□ 0.41
LIMCH1-211ENST00000509638 TRIAP1O43715 76 aa17.62■□□□□ 0.41
LIMCH1-211ENST00000509638 TNXBP22105 4242 aa17.61■□□□□ 0.41
LIMCH1-211ENST00000509638 A0A087X002 238 aa17.61■□□□□ 0.41
LIMCH1-211ENST00000509638 GAGE2AQ6NT46 116 aa17.61■□□□□ 0.41
LIMCH1-211ENST00000509638 LINC00575Q6W349 94 aa17.61■□□□□ 0.41
LIMCH1-211ENST00000509638 J3QL48 77 aa17.6■□□□□ 0.41
LIMCH1-211ENST00000509638 SLC25A20O43772 301 aa17.6■□□□□ 0.41
LIMCH1-211ENST00000509638 MT1HL1P0DM35 61 aa17.6■□□□□ 0.41
LIMCH1-211ENST00000509638 FAM229BQ4G0N7 80 aa17.59■□□□□ 0.41
LIMCH1-211ENST00000509638 PSMB2P49721 201 aa17.57■□□□□ 0.4
LIMCH1-211ENST00000509638 LINC00483Q53H64 154 aa17.57■□□□□ 0.4
LIMCH1-211ENST00000509638 CRYGAP11844 174 aa17.57■□□□□ 0.4
LIMCH1-211ENST00000509638 hADV29S1A0JD25 119 aa17.54■□□□□ 0.4
LIMCH1-211ENST00000509638 H0YGX0 51 aa17.54■□□□□ 0.4
LIMCH1-211ENST00000509638 KRTAP10-8P60410 259 aa17.53■□□□□ 0.4
LIMCH1-211ENST00000509638 FAM218AQ96MZ4 157 aa17.52■□□□□ 0.39
LIMCH1-211ENST00000509638 KRTAP13-2Q52LG2 175 aa17.51■□□□□ 0.39
LIMCH1-211ENST00000509638 DEFB105AQ8NG35 78 aa17.49■□□□□ 0.39
LIMCH1-211ENST00000509638 COX6CP09669 75 aa17.48■□□□□ 0.39
LIMCH1-211ENST00000509638 Q6ZQY7 126 aa17.48■□□□□ 0.39
LIMCH1-211ENST00000509638 CLEC2BQ92478 149 aa17.47■□□□□ 0.39
LIMCH1-211ENST00000509638 IGLV5-48A0A075B6I7 105 aa17.46■□□□□ 0.39
LIMCH1-211ENST00000509638 PCP4L1A6NKN8 68 aa17.46■□□□□ 0.39
LIMCH1-211ENST00000509638 SPRR1BP22528 89 aa17.46■□□□□ 0.39
LIMCH1-211ENST00000509638 C3orf22Q8N5N4 141 aa17.46■□□□□ 0.39
LIMCH1-211ENST00000509638 LINC01547P58512 204 aaPredicted RBP17.45■□□□□ 0.38
LIMCH1-211ENST00000509638 TYMSOSQ8TAI1 123 aa17.45■□□□□ 0.38
LIMCH1-211ENST00000509638 TEX49A0A1B0GTD5 131 aa17.44■□□□□ 0.38
LIMCH1-211ENST00000509638 NAA38Q9BRA0 125 aaKnown RBP17.44■□□□□ 0.38
LIMCH1-211ENST00000509638 SNHG12Q9BXW3 62 aa17.43■□□□□ 0.38
LIMCH1-211ENST00000509638 SNCGO76070 127 aa17.42■□□□□ 0.38
LIMCH1-211ENST00000509638 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP17.42■□□□□ 0.38
LIMCH1-211ENST00000509638 IGLV9-49A0A0B4J1Y8 123 aa17.41■□□□□ 0.38
LIMCH1-211ENST00000509638 SCGB1C2P0DMR2 95 aa17.4■□□□□ 0.38
LIMCH1-211ENST00000509638 A0A1B0GX51 115 aa17.39■□□□□ 0.37
LIMCH1-211ENST00000509638 Q8N377 158 aa17.38■□□□□ 0.37
LIMCH1-211ENST00000509638 MOBPQ13875 183 aa17.37■□□□□ 0.37
LIMCH1-211ENST00000509638 HERC1Q15751 4861 aa17.35■□□□□ 0.37
LIMCH1-211ENST00000509638 LAMTOR3Q9UHA4 124 aa17.35■□□□□ 0.37
LIMCH1-211ENST00000509638 C9orf153Q5TBE3 101 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms