RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 XAGE1AQ9HD64 81 aa5.87□□□□□ -1.47
LIMCH1-209ENST00000509277 DNAH3Q8TD57 4116 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 NUPR2A6NF83 97 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 JMJD7-PLA2G4BH0Y9G9 81 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 LINC01547P58512 204 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 FAM30AQ9NZY2 134 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 TMEM256-PLSCR3K7ERE1 68 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 DNAH9Q9NYC9 4486 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 TRAV7A0A075B6U4 112 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 REG3AQ06141 175 aa5.86□□□□□ -1.47
LIMCH1-209ENST00000509277 HIGD2AQ9BW72 106 aa5.85□□□□□ -1.47
LIMCH1-209ENST00000509277 PSCAO43653 123 aa5.85□□□□□ -1.47
LIMCH1-209ENST00000509277 NREPQ16612 68 aa5.85□□□□□ -1.47
LIMCH1-209ENST00000509277 Q6ZVQ6 151 aa5.85□□□□□ -1.47
LIMCH1-209ENST00000509277 WWC2-AS2Q96NR7 200 aa5.85□□□□□ -1.47
LIMCH1-209ENST00000509277 PMAIP1Q13794 54 aa5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 LCE2DQ5TA82 110 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 BPY2O14599 106 aa5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 TMEM254Q8TBM7 123 aa5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 CDC42SE2Q9NRR3 84 aa5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 Q8N814 137 aa5.84□□□□□ -1.47
LIMCH1-209ENST00000509277 HIGD2BQ4VC39 106 aa5.83□□□□□ -1.48
LIMCH1-209ENST00000509277 DEFB116Q30KQ4 102 aa5.83□□□□□ -1.48
LIMCH1-209ENST00000509277 CHCHD10Q8WYQ3 142 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-209ENST00000509277 IGLV5-39A0A0G2JS06 123 aa5.82□□□□□ -1.48
LIMCH1-209ENST00000509277 APLNQ9ULZ1 77 aa5.82□□□□□ -1.48
LIMCH1-209ENST00000509277 LINC00959A0A1B0GUT2 108 aa5.82□□□□□ -1.48
LIMCH1-209ENST00000509277 C4orf48Q5BLP8 95 aa5.82□□□□□ -1.48
LIMCH1-209ENST00000509277 CSMD3Q7Z407 3707 aa5.81□□□□□ -1.48
LIMCH1-209ENST00000509277 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.8□□□□□ -1.48
LIMCH1-209ENST00000509277 MRPL55Q7Z7F7 128 aaKnown RBP5.8□□□□□ -1.48
LIMCH1-209ENST00000509277 H3BNG1 76 aa5.79□□□□□ -1.48
LIMCH1-209ENST00000509277 CASC10Q5T4H9 136 aa5.79□□□□□ -1.48
LIMCH1-209ENST00000509277 ATP5EP2Q5VTU8 51 aa5.78□□□□□ -1.48
LIMCH1-209ENST00000509277 LYSTQ99698 3801 aa5.78□□□□□ -1.48
LIMCH1-209ENST00000509277 C6orf223Q8N319 242 aa5.78□□□□□ -1.48
LIMCH1-209ENST00000509277 A8MU10 97 aa5.77□□□□□ -1.49
LIMCH1-209ENST00000509277 IBA57-AS1B1ANH7 110 aa5.77□□□□□ -1.49
LIMCH1-209ENST00000509277 PRYO14603 147 aa5.77□□□□□ -1.49
LIMCH1-209ENST00000509277 FAM19A3Q7Z5A8 133 aa5.77□□□□□ -1.49
LIMCH1-209ENST00000509277 LINC01600Q96MT4 127 aa5.77□□□□□ -1.49
LIMCH1-209ENST00000509277 CHKB-CPT1BH3BT56 60 aa5.76□□□□□ -1.49
LIMCH1-209ENST00000509277 KRTAP1-5Q9BYS1 174 aa5.76□□□□□ -1.49
LIMCH1-209ENST00000509277 A0A1B0GUV1 79 aa5.76□□□□□ -1.49
LIMCH1-209ENST00000509277 ZNF561-AS1K7EIQ3 104 aa5.76□□□□□ -1.49
LIMCH1-209ENST00000509277 LINC01556Q5JQF7 62 aa5.76□□□□□ -1.49
LIMCH1-209ENST00000509277 A8MUN3 132 aa5.75□□□□□ -1.49
LIMCH1-209ENST00000509277 UNQ6190/PRO20217Q6UXQ8 127 aa5.75□□□□□ -1.49
LIMCH1-209ENST00000509277 IGLV5-45A0A087WSX0 123 aa5.75□□□□□ -1.49
LIMCH1-209ENST00000509277 SPAG11BQ08648 103 aa5.75□□□□□ -1.49
LIMCH1-209ENST00000509277 STARD9Q9P2P6 4700 aa5.74□□□□□ -1.49
LIMCH1-209ENST00000509277 NBDYA0A0U1RRE5 68 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 DNAH10OSP0CZ25 163 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 KLKP1Q107X0 134 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 C10orf25Q5T742 122 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 CD164L2Q6UWJ8 174 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 Q6ZQT0 140 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 KRTAP3-3Q9BYR6 98 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 KRTAP3-2Q9BYR7 98 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 LINC00575Q6W349 94 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 WFDC13Q8IUB5 93 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 CAMK2N2Q96S95 79 aa5.73□□□□□ -1.49
LIMCH1-209ENST00000509277 IGHV3OR16-9A0A0B4J2B5 98 aa5.72□□□□□ -1.49
LIMCH1-209ENST00000509277 TRBV10-3A0A0K0K1G6 114 aa5.72□□□□□ -1.49
LIMCH1-209ENST00000509277 SMIM29Q86T20 159 aa5.72□□□□□ -1.49
LIMCH1-209ENST00000509277 DIRC1Q969H9 104 aa5.72□□□□□ -1.49
LIMCH1-209ENST00000509277 PLECQ15149 4684 aaKnown RBP5.72□□□□□ -1.49
LIMCH1-209ENST00000509277 LINC00476Q8WZB0 136 aa5.71□□□□□ -1.49
LIMCH1-209ENST00000509277 A6NED7 52 aa5.71□□□□□ -1.5
LIMCH1-209ENST00000509277 NDUFC1O43677 76 aa5.71□□□□□ -1.5
LIMCH1-209ENST00000509277 IGKV2-24A0A0C4DH68 120 aa5.7□□□□□ -1.5
LIMCH1-209ENST00000509277 PRR15LQ9BU68 103 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 PRR34Q9NV39 138 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 A0A0G2JQZ4 141 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 A0A1W2PNN7 141 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 C1orf134Q5TEV5 83 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 C1orf64Q8NEQ6 169 aa5.69□□□□□ -1.5
LIMCH1-209ENST00000509277 Q8NDZ9 215 aa5.68□□□□□ -1.5
LIMCH1-209ENST00000509277 DNAH7Q8WXX0 4024 aa5.68□□□□□ -1.5
LIMCH1-209ENST00000509277 A0A096LNI7 61 aa5.68□□□□□ -1.5
LIMCH1-209ENST00000509277 COX7BP24311 80 aa5.68□□□□□ -1.5
LIMCH1-209ENST00000509277 OBSCN-AS1Q96MR7 158 aa5.67□□□□□ -1.5
LIMCH1-209ENST00000509277 TRBV7-4A0A0J9YYF1 115 aa5.67□□□□□ -1.5
LIMCH1-209ENST00000509277 TRAV22A0A0B4J277 110 aa5.67□□□□□ -1.5
LIMCH1-209ENST00000509277 Q6ZRU5 148 aa5.67□□□□□ -1.5
LIMCH1-209ENST00000509277 LINC00208Q96KT6 92 aa5.66□□□□□ -1.5
LIMCH1-209ENST00000509277 ZNF73O43830 326 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-209ENST00000509277 SYCNQ0VAF6 134 aa5.65□□□□□ -1.5
LIMCH1-209ENST00000509277 C15orf56Q8N910 161 aa5.65□□□□□ -1.5
LIMCH1-209ENST00000509277 RPL37AP8A6NKH3 93 aa5.65□□□□□ -1.51
LIMCH1-209ENST00000509277 ATP5EP56381 51 aaPredicted RBP5.64□□□□□ -1.51
LIMCH1-209ENST00000509277 Q6ZRP5 223 aa5.64□□□□□ -1.51
LIMCH1-209ENST00000509277 TNP2Q05952 138 aa5.64□□□□□ -1.51
LIMCH1-209ENST00000509277 Q8IZM0 81 aa5.63□□□□□ -1.51
LIMCH1-209ENST00000509277 CXCL6P80162 114 aa5.62□□□□□ -1.51
LIMCH1-209ENST00000509277 C6orf48Q9UBA6 75 aa5.62□□□□□ -1.51
LIMCH1-209ENST00000509277 DNAH10Q8IVF4 4471 aa5.62□□□□□ -1.51
LIMCH1-209ENST00000509277 CHTF8P0CG12 524 aa5.62□□□□□ -1.51
LIMCH1-209ENST00000509277 ST20-AS1Q8NBB2 130 aa5.62□□□□□ -1.51
LIMCH1-209ENST00000509277 KMT2AQ03164 3969 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms