RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 S100A7L2Q5SY68 101 aa10.52□□□□□ -0.73
COL9A3-214ENST00000490398 HIST3H2BBQ8N257 126 aa10.52□□□□□ -0.73
COL9A3-214ENST00000490398 Q9BRP9 147 aa10.52□□□□□ -0.73
COL9A3-214ENST00000490398 LINC00304Q8N9R0 145 aa10.51□□□□□ -0.73
COL9A3-214ENST00000490398 MUC2Q02817 5179 aa10.5□□□□□ -0.73
COL9A3-214ENST00000490398 TRAV23DV6A0A075B6W5 121 aa10.5□□□□□ -0.73
COL9A3-214ENST00000490398 C20orf202A1L168 122 aa10.49□□□□□ -0.73
COL9A3-214ENST00000490398 PCP2Q8IVA1 136 aa10.49□□□□□ -0.73
COL9A3-214ENST00000490398 HIST1H2BLQ99880 126 aa10.49□□□□□ -0.73
COL9A3-214ENST00000490398 RETNLBQ9BQ08 111 aa10.48□□□□□ -0.73
COL9A3-214ENST00000490398 SPANXCQ9NY87 97 aa10.48□□□□□ -0.73
COL9A3-214ENST00000490398 S100A12P80511 92 aa10.47□□□□□ -0.73
COL9A3-214ENST00000490398 Q6ZRX8 168 aa10.47□□□□□ -0.73
COL9A3-214ENST00000490398 ZNF706Q9Y5V0 76 aaPredicted RBP10.47□□□□□ -0.73
COL9A3-214ENST00000490398 ZNF73O43830 326 aaPredicted RBP10.45□□□□□ -0.74
COL9A3-214ENST00000490398 LINC00483Q53H64 154 aa10.45□□□□□ -0.74
COL9A3-214ENST00000490398 GAGE2AQ6NT46 116 aa10.45□□□□□ -0.74
COL9A3-214ENST00000490398 OR13C6PQ8NH95 151 aa10.44□□□□□ -0.74
COL9A3-214ENST00000490398 SPANXDQ9BXN6 97 aa10.44□□□□□ -0.74
COL9A3-214ENST00000490398 SCGB1D4Q6XE38 83 aa10.43□□□□□ -0.74
COL9A3-214ENST00000490398 S100A2P29034 98 aa10.42□□□□□ -0.74
COL9A3-214ENST00000490398 ST20-AS1Q8NBB2 130 aa10.42□□□□□ -0.74
COL9A3-214ENST00000490398 Q8NBF4 154 aa10.41□□□□□ -0.74
COL9A3-214ENST00000490398 SNRPEP62304 92 aaKnown RBP10.4□□□□□ -0.74
COL9A3-214ENST00000490398 MUSTN1Q8IVN3 82 aa10.39□□□□□ -0.75
COL9A3-214ENST00000490398 IGLV9-49A0A0B4J1Y8 123 aa10.38□□□□□ -0.75
COL9A3-214ENST00000490398 S100A6P06703 90 aa10.37□□□□□ -0.75
COL9A3-214ENST00000490398 MOBPQ13875 183 aa10.36□□□□□ -0.75
COL9A3-214ENST00000490398 JOSD1Q15040 202 aaPredicted RBP10.36□□□□□ -0.75
COL9A3-214ENST00000490398 AKR1D1P51857 326 aa10.35□□□□□ -0.75
COL9A3-214ENST00000490398 C6orf99Q4VX62 202 aa10.35□□□□□ -0.75
COL9A3-214ENST00000490398 LINC00518Q8N0U6 118 aa10.35□□□□□ -0.75
COL9A3-214ENST00000490398 IFITM1P13164 125 aa10.34□□□□□ -0.75
COL9A3-214ENST00000490398 SPAG11AQ6PDA7 123 aa10.34□□□□□ -0.75
COL9A3-214ENST00000490398 C5orf52A6NGY3 159 aa10.33□□□□□ -0.76
COL9A3-214ENST00000490398 HINT1P49773 126 aaPredicted RBP10.32□□□□□ -0.76
COL9A3-214ENST00000490398 ELOF1P60002 83 aaKnown RBP10.32□□□□□ -0.76
COL9A3-214ENST00000490398 Q6ZVH6 145 aa10.32□□□□□ -0.76
COL9A3-214ENST00000490398 COX7BP24311 80 aa10.31□□□□□ -0.76
COL9A3-214ENST00000490398 CTAG1AP78358 180 aa10.31□□□□□ -0.76
COL9A3-214ENST00000490398 C4orf48Q5BLP8 95 aa10.31□□□□□ -0.76
COL9A3-214ENST00000490398 CBY1Q9Y3M2 126 aa10.31□□□□□ -0.76
COL9A3-214ENST00000490398 IGLV7-46A0A075B6I9 117 aa10.29□□□□□ -0.76
COL9A3-214ENST00000490398 A6NDN8 102 aa10.29□□□□□ -0.76
COL9A3-214ENST00000490398 SCGB1D1O95968 90 aa10.29□□□□□ -0.76
COL9A3-214ENST00000490398 SSBP3-AS1Q7Z2R9 100 aa10.29□□□□□ -0.76
COL9A3-214ENST00000490398 HSBP1L1C9JCN9 74 aa10.28□□□□□ -0.76
COL9A3-214ENST00000490398 DHRS4-AS1Q9P1J3 65 aa10.28□□□□□ -0.76
COL9A3-214ENST00000490398 SPRR1BP22528 89 aa10.27□□□□□ -0.77
COL9A3-214ENST00000490398 COPS9Q8WXC6 57 aa10.27□□□□□ -0.77
COL9A3-214ENST00000490398 FAT4Q6V0I7 4981 aa10.26□□□□□ -0.77
COL9A3-214ENST00000490398 SPINK1P00995 79 aa10.26□□□□□ -0.77
COL9A3-214ENST00000490398 C9orf153Q5TBE3 101 aa10.26□□□□□ -0.77
COL9A3-214ENST00000490398 SMIM11BQ8TCY0 68 aa10.24□□□□□ -0.77
COL9A3-214ENST00000490398 TRBV7-6A0A0J9YX20 115 aa10.23□□□□□ -0.77
COL9A3-214ENST00000490398 TPRXLQ17RH7 258 aa10.23□□□□□ -0.77
COL9A3-214ENST00000490398 DEFB105AQ8NG35 78 aa10.23□□□□□ -0.77
COL9A3-214ENST00000490398 A4D1N5 150 aa10.22□□□□□ -0.77
COL9A3-214ENST00000490398 Q8N377 158 aa10.22□□□□□ -0.77
COL9A3-214ENST00000490398 TRAV13-2A0A0B4J235 113 aa10.21□□□□□ -0.77
COL9A3-214ENST00000490398 A0A1B0GWB2 263 aa10.21□□□□□ -0.77
COL9A3-214ENST00000490398 LINC01547P58512 204 aaPredicted RBP10.21□□□□□ -0.77
COL9A3-214ENST00000490398 COX8AP10176 69 aa10.2□□□□□ -0.78
COL9A3-214ENST00000490398 TAL2Q16559 108 aa10.19□□□□□ -0.78
COL9A3-214ENST00000490398 Q1RN00 199 aa10.19□□□□□ -0.78
COL9A3-214ENST00000490398 SMIM29Q86T20 159 aa10.19□□□□□ -0.78
COL9A3-214ENST00000490398 CDIP1Q9H305 208 aa10.19□□□□□ -0.78
COL9A3-214ENST00000490398 FP248Q71RG6 208 aaPredicted RBP10.18□□□□□ -0.78
COL9A3-214ENST00000490398 C12orf57Q99622 126 aa10.18□□□□□ -0.78
COL9A3-214ENST00000490398 RPS29P62273 56 aaKnown RBP10.17□□□□□ -0.78
COL9A3-214ENST00000490398 HRCT1Q6UXD1 115 aa10.17□□□□□ -0.78
COL9A3-214ENST00000490398 C14orf144Q96I85 54 aa10.17□□□□□ -0.78
COL9A3-214ENST00000490398 KRTAP13-3Q3SY46 172 aa10.16□□□□□ -0.78
COL9A3-214ENST00000490398 LAMTOR3Q9UHA4 124 aa10.16□□□□□ -0.78
COL9A3-214ENST00000490398 PAM16Q9Y3D7 125 aa10.16□□□□□ -0.78
COL9A3-214ENST00000490398 IGLV5-48A0A075B6I7 105 aa10.15□□□□□ -0.78
COL9A3-214ENST00000490398 TEX49A0A1B0GTD5 131 aa10.15□□□□□ -0.78
COL9A3-214ENST00000490398 A0A0G2JQZ4 141 aa10.14□□□□□ -0.79
COL9A3-214ENST00000490398 DLEU1O43261 78 aa10.14□□□□□ -0.79
COL9A3-214ENST00000490398 HIST1H4GQ99525 98 aa10.14□□□□□ -0.79
COL9A3-214ENST00000490398 SPATA45Q537H7 98 aa10.13□□□□□ -0.79
COL9A3-214ENST00000490398 SLC25A34Q6PIV7 304 aa10.13□□□□□ -0.79
COL9A3-214ENST00000490398 SLC25A20O43772 301 aa10.12□□□□□ -0.79
COL9A3-214ENST00000490398 C2orf91Q6ZV80 131 aa10.11□□□□□ -0.79
COL9A3-214ENST00000490398 LINC00575Q6W349 94 aa10.1□□□□□ -0.79
COL9A3-214ENST00000490398 VAMP8Q9BV40 100 aa10.08□□□□□ -0.8
COL9A3-214ENST00000490398 PRO1933Q9H354 126 aa10.07□□□□□ -0.8
COL9A3-214ENST00000490398 H7C2G1 150 aa10.06□□□□□ -0.8
COL9A3-214ENST00000490398 CFC1BP0CG36 223 aa10.06□□□□□ -0.8
COL9A3-214ENST00000490398 CFC1P0CG37 223 aa10.06□□□□□ -0.8
COL9A3-214ENST00000490398 NHP2Q9NX24 153 aaKnown RBP10.06□□□□□ -0.8
COL9A3-214ENST00000490398 HIGD1BQ9P298 99 aa10.06□□□□□ -0.8
COL9A3-214ENST00000490398 VAMP3Q15836 100 aa10.05□□□□□ -0.8
COL9A3-214ENST00000490398 Q6ZQY7 126 aa10.04□□□□□ -0.8
COL9A3-214ENST00000490398 hADV29S1A0JD25 119 aa10.03□□□□□ -0.8
COL9A3-214ENST00000490398 PYY3Q5JQD4 70 aa10.03□□□□□ -0.8
COL9A3-214ENST00000490398 CD164Q04900 197 aa10.01□□□□□ -0.81
COL9A3-214ENST00000490398 LIMD2Q9BT23 127 aa10.01□□□□□ -0.81
COL9A3-214ENST00000490398 TMA7Q9Y2S6 64 aaKnown RBP10.01□□□□□ -0.81
COL9A3-214ENST00000490398 KRTAP4-1Q9BYQ7 146 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms