RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 HIST1H2BCP62807 126 aa7.56□□□□□ -1.2
VARS-227ENST00000489979 HIST2H2BEQ16778 126 aa7.56□□□□□ -1.2
VARS-227ENST00000489979 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.56□□□□□ -1.2
VARS-227ENST00000489979 HIST1H2BHQ93079 126 aa7.56□□□□□ -1.2
VARS-227ENST00000489979 HIST1H2BNQ99877 126 aa7.56□□□□□ -1.2
VARS-227ENST00000489979 HIST1H2BMQ99879 126 aa7.56□□□□□ -1.2
VARS-227ENST00000489979 FABP4P15090 132 aa7.55□□□□□ -1.2
VARS-227ENST00000489979 DDTP30046 118 aa7.55□□□□□ -1.2
VARS-227ENST00000489979 Q6ZRX8 168 aa7.55□□□□□ -1.2
VARS-227ENST00000489979 MAP1LC3CQ9BXW4 147 aa7.55□□□□□ -1.2
VARS-227ENST00000489979 HERV-K104P63124 156 aa7.53□□□□□ -1.2
VARS-227ENST00000489979 LINC00587B1AMM8 73 aa7.52□□□□□ -1.21
VARS-227ENST00000489979 PLNP26678 52 aa7.52□□□□□ -1.21
VARS-227ENST00000489979 LINC00310P59036 64 aa7.52□□□□□ -1.21
VARS-227ENST00000489979 HRCT1Q6UXD1 115 aa7.51□□□□□ -1.21
VARS-227ENST00000489979 ST20-AS1Q8NBB2 130 aa7.51□□□□□ -1.21
VARS-227ENST00000489979 TRBV10-2A0A0K0K1G8 114 aa7.5□□□□□ -1.21
VARS-227ENST00000489979 HERVK_113P61574 105 aa7.5□□□□□ -1.21
VARS-227ENST00000489979 LIMD2Q9BT23 127 aa7.5□□□□□ -1.21
VARS-227ENST00000489979 KRTAP9-7A8MTY7 169 aa7.49□□□□□ -1.21
VARS-227ENST00000489979 DPM2O94777 84 aa7.49□□□□□ -1.21
VARS-227ENST00000489979 TMA7Q9Y2S6 64 aaKnown RBP7.49□□□□□ -1.21
VARS-227ENST00000489979 LOC107984156A0A0G2JMH3 177 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 MYMXA0A1B0GTQ4 84 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 IGLV6-57P01721 117 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 IGKCP01834 107 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 JOSD1Q15040 202 aaPredicted RBP7.48□□□□□ -1.21
VARS-227ENST00000489979 COA6Q5JTJ3 125 aaKnown RBP7.48□□□□□ -1.21
VARS-227ENST00000489979 COX6B2Q6YFQ2 88 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 ARL17AQ8IVW1 177 aa7.48□□□□□ -1.21
VARS-227ENST00000489979 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.47□□□□□ -1.21
VARS-227ENST00000489979 S100A6P06703 90 aa7.47□□□□□ -1.21
VARS-227ENST00000489979 S100A7L2Q5SY68 101 aa7.47□□□□□ -1.21
VARS-227ENST00000489979 SPANXB1Q9NS25 103 aaPredicted RBP7.47□□□□□ -1.21
VARS-227ENST00000489979 TRAV23DV6A0A075B6W5 121 aa7.46□□□□□ -1.22
VARS-227ENST00000489979 C20orf202A1L168 122 aa7.46□□□□□ -1.22
VARS-227ENST00000489979 S100A2P29034 98 aa7.46□□□□□ -1.22
VARS-227ENST00000489979 SYS1-DBNDD2H3BUS1 97 aa7.45□□□□□ -1.22
VARS-227ENST00000489979 AKR1D1P51857 326 aa7.45□□□□□ -1.22
VARS-227ENST00000489979 PET117Q6UWS5 81 aa7.45□□□□□ -1.22
VARS-227ENST00000489979 ZNF73O43830 326 aaPredicted RBP7.44□□□□□ -1.22
VARS-227ENST00000489979 TSPEAR-AS2P59090 65 aa7.44□□□□□ -1.22
VARS-227ENST00000489979 KRTDAPP60985 99 aa7.44□□□□□ -1.22
VARS-227ENST00000489979 PMCHL2Q9BQD1 86 aa7.44□□□□□ -1.22
VARS-227ENST00000489979 C5orf52A6NGY3 159 aa7.43□□□□□ -1.22
VARS-227ENST00000489979 LEPROTO15243 131 aa7.43□□□□□ -1.22
VARS-227ENST00000489979 LGALS3P17931 250 aaKnown RBP7.43□□□□□ -1.22
VARS-227ENST00000489979 MIEN1Q9BRT3 115 aa7.43□□□□□ -1.22
VARS-227ENST00000489979 NDUFC2O95298 119 aa7.42□□□□□ -1.22
VARS-227ENST00000489979 SPRR1BP22528 89 aa7.42□□□□□ -1.22
VARS-227ENST00000489979 SSPOA2VEC9 5147 aa7.42□□□□□ -1.22
VARS-227ENST00000489979 NMUP48645 174 aa7.41□□□□□ -1.22
VARS-227ENST00000489979 RPL37P61927 97 aaKnown RBP7.41□□□□□ -1.22
VARS-227ENST00000489979 LINC01545Q5VT33 79 aa7.41□□□□□ -1.22
VARS-227ENST00000489979 SLC25A34Q6PIV7 304 aa7.41□□□□□ -1.22
VARS-227ENST00000489979 J3QQQ9 107 aa7.4□□□□□ -1.22
VARS-227ENST00000489979 C3orf79P0CE67 100 aa7.4□□□□□ -1.22
VARS-227ENST00000489979 LAMTOR3Q9UHA4 124 aa7.4□□□□□ -1.22
VARS-227ENST00000489979 USH2AO75445 5202 aa7.39□□□□□ -1.23
VARS-227ENST00000489979 HINT1P49773 126 aaPredicted RBP7.39□□□□□ -1.23
VARS-227ENST00000489979 SNRPEP62304 92 aaKnown RBP7.39□□□□□ -1.23
VARS-227ENST00000489979 E9PLD3 99 aa7.38□□□□□ -1.23
VARS-227ENST00000489979 H7C2G1 150 aa7.38□□□□□ -1.23
VARS-227ENST00000489979 NPC2P61916 151 aa7.38□□□□□ -1.23
VARS-227ENST00000489979 SOSTDC1Q6X4U4 206 aa7.38□□□□□ -1.23
VARS-227ENST00000489979 HIST3H2BBQ8N257 126 aa7.38□□□□□ -1.23
VARS-227ENST00000489979 EIF4EBP3O60516 100 aaPredicted RBP7.37□□□□□ -1.23
VARS-227ENST00000489979 CD164Q04900 197 aa7.37□□□□□ -1.23
VARS-227ENST00000489979 C1orf195Q5TG92 126 aa7.36□□□□□ -1.23
VARS-227ENST00000489979 Q1RN00 199 aa7.35□□□□□ -1.23
VARS-227ENST00000489979 DHRS4-AS1Q9P1J3 65 aa7.35□□□□□ -1.23
VARS-227ENST00000489979 HSBP1L1C9JCN9 74 aa7.34□□□□□ -1.23
VARS-227ENST00000489979 Q5XG85 94 aa7.34□□□□□ -1.23
VARS-227ENST00000489979 HIST1H2BLQ99880 126 aa7.34□□□□□ -1.23
VARS-227ENST00000489979 PRO1933Q9H354 126 aa7.34□□□□□ -1.23
VARS-227ENST00000489979 CBY1Q9Y3M2 126 aa7.34□□□□□ -1.23
VARS-227ENST00000489979 ADAMTSL4-AS1Q5T5F5 129 aa7.33□□□□□ -1.24
VARS-227ENST00000489979 Q6Q795 121 aa7.32□□□□□ -1.24
VARS-227ENST00000489979 DEFB105AQ8NG35 78 aa7.32□□□□□ -1.24
VARS-227ENST00000489979 ZNF815PA8K554 130 aa7.31□□□□□ -1.24
VARS-227ENST00000489979 TAL2Q16559 108 aa7.31□□□□□ -1.24
VARS-227ENST00000489979 OR13C6PQ8NH95 151 aa7.31□□□□□ -1.24
VARS-227ENST00000489979 A0A0J9YXY3 114 aa7.3□□□□□ -1.24
VARS-227ENST00000489979 SMIM29Q86T20 159 aa7.3□□□□□ -1.24
VARS-227ENST00000489979 ATOH7Q8N100 152 aa7.3□□□□□ -1.24
VARS-227ENST00000489979 A0A0G2JQZ4 141 aa7.29□□□□□ -1.24
VARS-227ENST00000489979 SCGB1D1O95968 90 aa7.29□□□□□ -1.24
VARS-227ENST00000489979 SCGB1D4Q6XE38 83 aa7.29□□□□□ -1.24
VARS-227ENST00000489979 COPS9Q8WXC6 57 aa7.29□□□□□ -1.24
VARS-227ENST00000489979 TEX49A0A1B0GTD5 131 aa7.28□□□□□ -1.24
VARS-227ENST00000489979 TIMM17BO60830 172 aa7.28□□□□□ -1.24
VARS-227ENST00000489979 COX7BP24311 80 aa7.28□□□□□ -1.24
VARS-227ENST00000489979 ELOF1P60002 83 aaKnown RBP7.28□□□□□ -1.24
VARS-227ENST00000489979 CFC1P0CG37 223 aa7.27□□□□□ -1.25
VARS-227ENST00000489979 SPANXCQ9NY87 97 aa7.27□□□□□ -1.25
VARS-227ENST00000489979 FCGBPQ9Y6R7 5405 aaPredicted RBP7.25□□□□□ -1.25
VARS-227ENST00000489979 C6orf99Q4VX62 202 aa7.25□□□□□ -1.25
VARS-227ENST00000489979 LINC00308Q8TCZ7 52 aa7.25□□□□□ -1.25
VARS-227ENST00000489979 KRTAP9-8Q9BYQ0 159 aa7.25□□□□□ -1.25
VARS-227ENST00000489979 ANKRD39Q53RE8 183 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms