RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TTTY13Q9BZ97 58 aa4.46□□□□□ -1.7
HDAC3-209ENST00000486618 UBR4Q5T4S7 5183 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 A0A0J9YXY3 114 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 LRCOL1A6NCL2 159 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 S100A7L2Q5SY68 101 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 WFDC10BQ8IUB3 73 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 Q8N814 137 aa4.45□□□□□ -1.7
HDAC3-209ENST00000486618 IGLV1-50A0A075B6I6 118 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 TRAV13-2A0A0B4J235 113 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 IGKV3D-20A0A0C4DH25 116 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 SMIM1B2RUZ4 78 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 SPINK4O60575 86 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 PDE6HQ13956 83 aa4.44□□□□□ -1.7
HDAC3-209ENST00000486618 PRAC2D3DTV9 90 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 ZNF56Q15929 161 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 Q6ZSA8 131 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 ZFAND2AQ8N6M9 145 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 C7orf33Q8WU49 177 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 RETNLBQ9BQ08 111 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 NMES1Q9C002 83 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 C11orf1Q9H5F2 150 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 C8orf17Q9NRJ1 99 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 DHRS4-AS1Q9P1J3 65 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 ARL2-SNX15V9GYD0 113 aa4.43□□□□□ -1.7
HDAC3-209ENST00000486618 IGHV3-30-3P0DP02 117 aa4.42□□□□□ -1.7
HDAC3-209ENST00000486618 CAMK2N1Q7Z7J9 78 aa4.42□□□□□ -1.7
HDAC3-209ENST00000486618 LINC00269Q8N2A0 174 aa4.42□□□□□ -1.7
HDAC3-209ENST00000486618 TMEM141Q96I45 108 aa4.42□□□□□ -1.7
HDAC3-209ENST00000486618 SMIM7Q9BQ49 75 aa4.42□□□□□ -1.7
HDAC3-209ENST00000486618 H7BZZ5 65 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 M0R3E3 92 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 NPYP01303 97 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 GCHFRP30047 84 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 KLKP1Q107X0 134 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 LUZP6Q538Z0 58 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 LINC01556Q5JQF7 62 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 CYSTM1Q9H1C7 97 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 TMEM14CQ9P0S9 112 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 LINC00474Q9P2X8 69 aa4.41□□□□□ -1.7
HDAC3-209ENST00000486618 IGKV2-40A0A087WW87 121 aaPredicted RBP4.4□□□□□ -1.71
HDAC3-209ENST00000486618 IGKV2D-40P01614 121 aaPredicted RBP4.4□□□□□ -1.71
HDAC3-209ENST00000486618 MIAQ16674 131 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 C9orf47Q6ZRZ4 202 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 TIMM21Q9BVV7 248 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 NHP2Q9NX24 153 aaKnown RBP4.4□□□□□ -1.71
HDAC3-209ENST00000486618 NDUFA12Q9UI09 145 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 TP53TG3Q9ULZ0 132 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 HMCN2Q8NDA2 5059 aa4.4□□□□□ -1.71
HDAC3-209ENST00000486618 TRAV21A0A0B4J279 112 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 hDV103S1A0JD37 113 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 GNRH2O43555 120 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 RNASE13Q5GAN3 156 aaKnown RBP4.39□□□□□ -1.71
HDAC3-209ENST00000486618 UBE2WQ96B02 151 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 CHCHD7Q9BUK0 85 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 CYP4F30PQ9H0H9 118 aa4.39□□□□□ -1.71
HDAC3-209ENST00000486618 XCL1P47992 114 aa4.38□□□□□ -1.71
HDAC3-209ENST00000486618 KRTAP10-4P60372 401 aaPredicted RBP4.38□□□□□ -1.71
HDAC3-209ENST00000486618 GNG13Q9P2W3 67 aa4.38□□□□□ -1.71
HDAC3-209ENST00000486618 LENEPQ9Y5L5 61 aa4.38□□□□□ -1.71
HDAC3-209ENST00000486618 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.37□□□□□ -1.71
HDAC3-209ENST00000486618 LOC107984156A0A0G2JMH3 177 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 SLC25A20O43772 301 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 IGHV3-30P01768 117 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 IGHV3-33P01772 117 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 IGHV3-30-5P0DP03 117 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 ARL17AQ8IVW1 177 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 Q8TAT8 98 aa4.37□□□□□ -1.71
HDAC3-209ENST00000486618 TRBV10-3A0A0K0K1G6 114 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 IGLV2-11P01706 119 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 UBE2D3P61077 147 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 RPL37AP61513 92 aaKnown RBP4.36□□□□□ -1.71
HDAC3-209ENST00000486618 UBE2D2P62837 147 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 SYCNQ0VAF6 134 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 LELP1Q5T871 98 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 SDIM1Q6ZPB5 146 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 CIRBP-AS1Q8TBR5 109 aa4.36□□□□□ -1.71
HDAC3-209ENST00000486618 LRP1Q07954 4544 aaKnown RBP4.36□□□□□ -1.71
HDAC3-209ENST00000486618 A6NED7 52 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 BPY2O14599 106 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 LECT2O14960 151 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 PRR9Q5T870 116 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 SMCR5Q8TEV8 140 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 PPP1R1CQ8WVI7 109 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 IFI27L1Q96BM0 104 aa4.35□□□□□ -1.71
HDAC3-209ENST00000486618 IGHV3-73A0A0B4J1V6 119 aa4.34□□□□□ -1.71
HDAC3-209ENST00000486618 MYMXA0A1B0GTQ4 84 aa4.34□□□□□ -1.71
HDAC3-209ENST00000486618 SH2D1AO60880 128 aa4.34□□□□□ -1.71
HDAC3-209ENST00000486618 MGST1P10620 155 aaKnown RBP4.34□□□□□ -1.71
HDAC3-209ENST00000486618 PRO1854Q9UHT4 67 aa4.34□□□□□ -1.71
HDAC3-209ENST00000486618 DNAH8Q96JB1 4490 aa4.34□□□□□ -1.71
HDAC3-209ENST00000486618 IGKV2D-24A0A075B6R9 120 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 A0A0B4J2C4 111 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 TRBV6-4A0A1B0GX49 114 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 A8MWP4 228 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 CRPP02741 224 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 C14orf177Q52M58 125 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 FAM19A2Q8N3H0 131 aa4.33□□□□□ -1.72
HDAC3-209ENST00000486618 TRBV7-3A0A075B6L6 115 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 IGKV2D-26A0A0A0MRZ7 120 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 C19orf71A6NCJ1 209 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms