RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 IGKV2-24A0A0C4DH68 120 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 A0A1B0GVY2 172 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 NCR3O14931 201 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 CHTF8P0CG12 524 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 SERTAD4-AS1Q5TG53 156 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 LINC00337Q8N6G1 96 aa4.22□□□□□ -1.73
USP48-208ENST00000479177 LRP1BQ9NZR2 4599 aa4.21□□□□□ -1.73
USP48-208ENST00000479177 TRBV10-2A0A0K0K1G8 114 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 FAM168BA1KXE4 195 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 PANO1I0J062 215 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 COL5A1-AS1Q5SY13 56 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 KRTAP7-1Q8IUC3 87 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 SPACA4Q8TDM5 124 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 LINC00474Q9P2X8 69 aa4.21□□□□□ -1.74
USP48-208ENST00000479177 A0A0A0MQY5 61 aa4.2□□□□□ -1.74
USP48-208ENST00000479177 TRAV13-2A0A0B4J235 113 aa4.2□□□□□ -1.74
USP48-208ENST00000479177 TAX1BP3O14907 124 aa4.2□□□□□ -1.74
USP48-208ENST00000479177 RPL13AP40429 203 aaKnown RBP4.2□□□□□ -1.74
USP48-208ENST00000479177 PRR3P79522 188 aaKnown RBP4.2□□□□□ -1.74
USP48-208ENST00000479177 FAM19A5Q7Z5A7 132 aaPredicted RBP4.2□□□□□ -1.74
USP48-208ENST00000479177 RAB37Q96AX2 223 aa4.2□□□□□ -1.74
USP48-208ENST00000479177 PRO1854Q9UHT4 67 aa4.2□□□□□ -1.74
USP48-208ENST00000479177 A0A1W2PNN7 141 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 EPM2AB3EWF7 344 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 M0R378 163 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 TSPAN13O95857 204 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 PCP4P48539 62 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 KRTAP10-1P60331 282 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 NKAPP1Q8N9T2 125 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 C7orf33Q8WU49 177 aa4.19□□□□□ -1.74
USP48-208ENST00000479177 IGKV2D-30A0A075B6S6 120 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 M0QXV9 152 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 IGLV6-57P01721 117 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 LBHQ53QV2 105 aaPredicted RBP4.18□□□□□ -1.74
USP48-208ENST00000479177 Q6ZSA8 131 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 OR13C6PQ8NH95 151 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 C22orf24Q9Y442 160 aa4.18□□□□□ -1.74
USP48-208ENST00000479177 A0A087WYN8 130 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 TRBV10-3A0A0K0K1G6 114 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 GAGE10A6NGK3 116 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 H7C2G1 150 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 Q1RN00 199 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 S100A7L2Q5SY68 101 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 MRPL55Q7Z7F7 128 aaKnown RBP4.17□□□□□ -1.74
USP48-208ENST00000479177 NAA38Q9BRA0 125 aaKnown RBP4.17□□□□□ -1.74
USP48-208ENST00000479177 TMEM126AQ9H061 195 aa4.17□□□□□ -1.74
USP48-208ENST00000479177 APOBP04114 4563 aaKnown RBP4.17□□□□□ -1.74
USP48-208ENST00000479177 LCE1EQ5T753 118 aa4.16□□□□□ -1.74
USP48-208ENST00000479177 PHF5AQ7RTV0 110 aaKnown RBP4.16□□□□□ -1.74
USP48-208ENST00000479177 SMIM11BQ8TCY0 68 aa4.16□□□□□ -1.74
USP48-208ENST00000479177 LINC00167Q96N53 147 aa4.16□□□□□ -1.74
USP48-208ENST00000479177 PLAC8Q9NZF1 115 aa4.16□□□□□ -1.74
USP48-208ENST00000479177 IGLV1-50A0A075B6I6 118 aa4.15□□□□□ -1.75
USP48-208ENST00000479177 TRAV23DV6A0A075B6W5 121 aa4.15□□□□□ -1.75
USP48-208ENST00000479177 H3BUT2 72 aa4.15□□□□□ -1.75
USP48-208ENST00000479177 RPL28P46779 137 aaKnown RBP4.15□□□□□ -1.75
USP48-208ENST00000479177 SCXQ7RTU7 201 aa4.15□□□□□ -1.75
USP48-208ENST00000479177 KCNQ1DNQ9H478 68 aa4.15□□□□□ -1.75
USP48-208ENST00000479177 A0A1W2PPM0 123 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 RPL37AP8A6NKH3 93 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 PSMB2P49721 201 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 KRTAP11-1Q8IUC1 163 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 PRR26Q8N8Z3 221 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 CIRBP-AS1Q8TBR5 109 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 CBY1Q9Y3M2 126 aa4.14□□□□□ -1.75
USP48-208ENST00000479177 ZNF73O43830 326 aaPredicted RBP4.13□□□□□ -1.75
USP48-208ENST00000479177 SPRR1AP35321 89 aa4.13□□□□□ -1.75
USP48-208ENST00000479177 C6orf99Q4VX62 202 aa4.13□□□□□ -1.75
USP48-208ENST00000479177 DIRC1Q969H9 104 aa4.13□□□□□ -1.75
USP48-208ENST00000479177 DPH3Q96FX2 82 aa4.13□□□□□ -1.75
USP48-208ENST00000479177 SRRM2Q9UQ35 2752 aaKnown RBP4.13□□□□□ -1.75
USP48-208ENST00000479177 KRTAP4-16G5E9R7 235 aaPredicted RBP4.12□□□□□ -1.75
USP48-208ENST00000479177 FABP2P12104 132 aa4.12□□□□□ -1.75
USP48-208ENST00000479177 UBE2BP63146 152 aa4.12□□□□□ -1.75
USP48-208ENST00000479177 HAMPP81172 84 aa4.12□□□□□ -1.75
USP48-208ENST00000479177 LYRM7Q5U5X0 104 aa4.12□□□□□ -1.75
USP48-208ENST00000479177 EPPK1P58107 5090 aaKnown RBP4.11□□□□□ -1.75
USP48-208ENST00000479177 TRBV7-6A0A0J9YX20 115 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 A0A1B0GV90 55 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 COX6CP09669 75 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 COX7BP24311 80 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 ELOF1P60002 83 aaKnown RBP4.11□□□□□ -1.75
USP48-208ENST00000479177 REG3GQ6UW15 175 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 CLEC2BQ92478 149 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 FAM218AQ96MZ4 157 aa4.11□□□□□ -1.75
USP48-208ENST00000479177 RYR1P21817 5038 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 ETDCA0A1B0GVM5 59 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 H0YGX0 51 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 K7EP34 96 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 LST1O00453 97 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 TCL1BO95988 128 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 SCGB1C2P0DMR2 95 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 SPCS1Q9Y6A9 102 aa4.1□□□□□ -1.75
USP48-208ENST00000479177 TRBV20-1A0A075B6N2 111 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 BCE1O60756 84 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 XGP55808 180 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 VAMP3Q15836 100 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 Q6ZRX8 168 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 PSORS1C2Q9UIG4 136 aa4.09□□□□□ -1.75
USP48-208ENST00000479177 HSPG2P98160 4391 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms