RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SPINK6Q6UWN8 80 aa9.66□□□□□ -0.86
HDAC6-220ENST00000477528 TEX15Q9BXT5 2789 aa9.66□□□□□ -0.86
HDAC6-220ENST00000477528 WIPF1O43516 503 aa9.66□□□□□ -0.86
HDAC6-220ENST00000477528 SMIM26A0A096LP01 95 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 CHKB-CPT1BH3BT56 60 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 ST20-AS1Q8NBB2 130 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 CHD6Q8TD26 2715 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 FAM168BA1KXE4 195 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 HCG22E2RYF7 251 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 DEFB116Q30KQ4 102 aa9.65□□□□□ -0.86
HDAC6-220ENST00000477528 IGLV1-50A0A075B6I6 118 aa9.65□□□□□ -0.87
HDAC6-220ENST00000477528 C5orf47Q569G3 176 aa9.65□□□□□ -0.87
HDAC6-220ENST00000477528 CASC2Q6XLA1 102 aa9.64□□□□□ -0.87
HDAC6-220ENST00000477528 C1orf134Q5TEV5 83 aa9.63□□□□□ -0.87
HDAC6-220ENST00000477528 NBDYA0A0U1RRE5 68 aa9.63□□□□□ -0.87
HDAC6-220ENST00000477528 TLX1NBP0CAT3 122 aa9.63□□□□□ -0.87
HDAC6-220ENST00000477528 PRR4Q16378 134 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 LINC00476Q8WZB0 136 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 OBSCN-AS1Q96MR7 158 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 LINC00208Q96KT6 92 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 UNC79Q9P2D8 2635 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 BRK1Q8WUW1 75 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 TM2D3Q9BRN9 247 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 COL12A1Q99715 3063 aa9.62□□□□□ -0.87
HDAC6-220ENST00000477528 PHF5AQ7RTV0 110 aaKnown RBP9.61□□□□□ -0.87
HDAC6-220ENST00000477528 SMIM29Q86T20 159 aa9.61□□□□□ -0.87
HDAC6-220ENST00000477528 PLA2G2DQ9UNK4 145 aa9.6□□□□□ -0.87
HDAC6-220ENST00000477528 TRBV7-4A0A0J9YYF1 115 aa9.6□□□□□ -0.87
HDAC6-220ENST00000477528 TACC2O95359 2948 aa9.58□□□□□ -0.88
HDAC6-220ENST00000477528 EPM2AB3EWF7 344 aa9.58□□□□□ -0.88
HDAC6-220ENST00000477528 V9GYY9 64 aa9.57□□□□□ -0.88
HDAC6-220ENST00000477528 MAST4O15021 2626 aa9.56□□□□□ -0.88
HDAC6-220ENST00000477528 CHTF8P0CG12 524 aa9.56□□□□□ -0.88
HDAC6-220ENST00000477528 RPS28P62857 69 aaKnown RBP9.56□□□□□ -0.88
HDAC6-220ENST00000477528 Q8N377 158 aa9.55□□□□□ -0.88
HDAC6-220ENST00000477528 IGHV6-1A0A0B4J1U7 121 aa9.55□□□□□ -0.88
HDAC6-220ENST00000477528 CIRBP-AS1Q8TBR5 109 aa9.55□□□□□ -0.88
HDAC6-220ENST00000477528 H0Y9P7 68 aa9.53□□□□□ -0.88
HDAC6-220ENST00000477528 GCN1Q92616 2671 aaKnown RBP9.53□□□□□ -0.88
HDAC6-220ENST00000477528 MGAM2Q2M2H8 2515 aa9.53□□□□□ -0.88
HDAC6-220ENST00000477528 ITPR1Q14643 2758 aa9.52□□□□□ -0.89
HDAC6-220ENST00000477528 CASC10Q5T4H9 136 aa9.52□□□□□ -0.89
HDAC6-220ENST00000477528 HRNRQ86YZ3 2850 aaPredicted RBP9.51□□□□□ -0.89
HDAC6-220ENST00000477528 SETXQ7Z333 2677 aaKnown RBP9.51□□□□□ -0.89
HDAC6-220ENST00000477528 ZZEF1O43149 2961 aa9.5□□□□□ -0.89
HDAC6-220ENST00000477528 RTL8CO15255 209 aa9.49□□□□□ -0.89
HDAC6-220ENST00000477528 hDV103S1A0JD37 113 aa9.48□□□□□ -0.89
HDAC6-220ENST00000477528 IGLV5-37A0A075B6J1 123 aa9.47□□□□□ -0.89
HDAC6-220ENST00000477528 Q8NDZ9 215 aa9.47□□□□□ -0.89
HDAC6-220ENST00000477528 UTP20O75691 2785 aaKnown RBP9.47□□□□□ -0.89
HDAC6-220ENST00000477528 ERC2-IT1O76042 136 aa9.46□□□□□ -0.9
HDAC6-220ENST00000477528 MOBPQ13875 183 aa9.46□□□□□ -0.9
HDAC6-220ENST00000477528 CNBPP62633 177 aaKnown RBP9.45□□□□□ -0.9
HDAC6-220ENST00000477528 IGFL1Q6UW32 110 aa9.45□□□□□ -0.9
HDAC6-220ENST00000477528 C9orf163Q8N9P6 203 aa9.44□□□□□ -0.9
HDAC6-220ENST00000477528 K7EQZ3 153 aa9.44□□□□□ -0.9
HDAC6-220ENST00000477528 C1orf64Q8NEQ6 169 aa9.44□□□□□ -0.9
HDAC6-220ENST00000477528 APLNQ9ULZ1 77 aa9.43□□□□□ -0.9
HDAC6-220ENST00000477528 CFAP47Q6ZTR5 3102 aa9.43□□□□□ -0.9
HDAC6-220ENST00000477528 WDFY3Q8IZQ1 3526 aa9.42□□□□□ -0.9
HDAC6-220ENST00000477528 IGLV5-48A0A075B6I7 105 aa9.42□□□□□ -0.9
HDAC6-220ENST00000477528 KLKP1Q107X0 134 aa9.42□□□□□ -0.9
HDAC6-220ENST00000477528 PCOTHQ58A44 107 aa9.42□□□□□ -0.9
HDAC6-220ENST00000477528 A0A1W2PNN7 141 aa9.41□□□□□ -0.9
HDAC6-220ENST00000477528 TP53AIP1Q9HCN2 124 aa9.41□□□□□ -0.9
HDAC6-220ENST00000477528 RPL37AP61513 92 aaKnown RBP9.4□□□□□ -0.9
HDAC6-220ENST00000477528 NBEAL2Q6ZNJ1 2754 aa9.4□□□□□ -0.9
HDAC6-220ENST00000477528 A0A1W2PNM2 257 aa9.4□□□□□ -0.91
HDAC6-220ENST00000477528 H3BPC8 53 aa9.39□□□□□ -0.91
HDAC6-220ENST00000477528 A8MWP4 228 aa9.38□□□□□ -0.91
HDAC6-220ENST00000477528 A0A0U1RQV1 116 aa9.38□□□□□ -0.91
HDAC6-220ENST00000477528 TEP1Q99973 2627 aaKnown RBP9.37□□□□□ -0.91
HDAC6-220ENST00000477528 SPTSSBQ8NFR3 76 aa9.36□□□□□ -0.91
HDAC6-220ENST00000477528 SEC61GP60059 68 aa9.36□□□□□ -0.91
HDAC6-220ENST00000477528 KRTAP26-1Q6PEX3 210 aa9.35□□□□□ -0.91
HDAC6-220ENST00000477528 DMDP11532 3685 aa9.35□□□□□ -0.91
HDAC6-220ENST00000477528 LIMD2Q9BT23 127 aa9.35□□□□□ -0.91
HDAC6-220ENST00000477528 ZANQ9Y493 2812 aa9.35□□□□□ -0.91
HDAC6-220ENST00000477528 A0A087WTM6 91 aa9.34□□□□□ -0.91
HDAC6-220ENST00000477528 UBR5O95071 2799 aaPredicted RBP9.34□□□□□ -0.91
HDAC6-220ENST00000477528 A0A0G2JQZ4 141 aa9.34□□□□□ -0.91
HDAC6-220ENST00000477528 A6NED7 52 aa9.34□□□□□ -0.91
HDAC6-220ENST00000477528 TRAV22A0A0B4J277 110 aa9.33□□□□□ -0.92
HDAC6-220ENST00000477528 PRR15LQ9BU68 103 aa9.33□□□□□ -0.92
HDAC6-220ENST00000477528 APCP25054 2843 aa9.33□□□□□ -0.92
HDAC6-220ENST00000477528 H7BZZ5 65 aa9.33□□□□□ -0.92
HDAC6-220ENST00000477528 MUC3AQ02505 3323 aa9.32□□□□□ -0.92
HDAC6-220ENST00000477528 C4orf26Q17RF5 130 aa9.31□□□□□ -0.92
HDAC6-220ENST00000477528 PRR15Q8IV56 129 aa9.31□□□□□ -0.92
HDAC6-220ENST00000477528 PSPHP1O15172 72 aa9.3□□□□□ -0.92
HDAC6-220ENST00000477528 ITPR2Q14571 2701 aa9.29□□□□□ -0.92
HDAC6-220ENST00000477528 COL6A5A8TX70 2615 aa9.28□□□□□ -0.92
HDAC6-220ENST00000477528 SPRR1AP35321 89 aa9.28□□□□□ -0.92
HDAC6-220ENST00000477528 NOTCH1P46531 2555 aa9.28□□□□□ -0.92
HDAC6-220ENST00000477528 ZNF861PO60384 105 aa9.28□□□□□ -0.92
HDAC6-220ENST00000477528 WWC2-AS2Q96NR7 200 aa9.27□□□□□ -0.93
HDAC6-220ENST00000477528 RETNLBQ9BQ08 111 aa9.27□□□□□ -0.93
HDAC6-220ENST00000477528 SPRR4Q96PI1 79 aa9.27□□□□□ -0.93
HDAC6-220ENST00000477528 SPACA4Q8TDM5 124 aa9.22□□□□□ -0.93
HDAC6-220ENST00000477528 PSORS1C2Q9UIG4 136 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms