RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PFN2P35080 140 aa8.35□□□□□ -1.07
UPF3A-204ENST00000475218 HIST1H4GQ99525 98 aa8.35□□□□□ -1.07
UPF3A-204ENST00000475218 TMEM238C9JI98 176 aa8.34□□□□□ -1.07
UPF3A-204ENST00000475218 VPREB1P12018 145 aa8.34□□□□□ -1.07
UPF3A-204ENST00000475218 RPL13AP40429 203 aaKnown RBP8.33□□□□□ -1.08
UPF3A-204ENST00000475218 RPL24P83731 157 aaKnown RBP8.33□□□□□ -1.08
UPF3A-204ENST00000475218 ZNF625Q96I27 306 aaPredicted RBP8.33□□□□□ -1.08
UPF3A-204ENST00000475218 SND1-IT1Q9HBX3 110 aa8.33□□□□□ -1.08
UPF3A-204ENST00000475218 ERG28Q9UKR5 140 aa8.33□□□□□ -1.08
UPF3A-204ENST00000475218 RPL28P46779 137 aaKnown RBP8.33□□□□□ -1.08
UPF3A-204ENST00000475218 SIGMAR1Q99720 223 aa8.33□□□□□ -1.08
UPF3A-204ENST00000475218 HERVK_113P61574 105 aa8.32□□□□□ -1.08
UPF3A-204ENST00000475218 NAA38Q9BRA0 125 aaKnown RBP8.32□□□□□ -1.08
UPF3A-204ENST00000475218 ANAPC11Q9NYG5 84 aa8.32□□□□□ -1.08
UPF3A-204ENST00000475218 IGKV2-28A0A075B6P5 120 aa8.31□□□□□ -1.08
UPF3A-204ENST00000475218 IGKV2D-28P01615 120 aa8.31□□□□□ -1.08
UPF3A-204ENST00000475218 NKAPP1Q8N9T2 125 aa8.31□□□□□ -1.08
UPF3A-204ENST00000475218 SPANXB1Q9NS25 103 aaPredicted RBP8.31□□□□□ -1.08
UPF3A-204ENST00000475218 TMEM170BQ5T4T1 132 aa8.3□□□□□ -1.08
UPF3A-204ENST00000475218 KRTAP13-2Q52LG2 175 aa8.3□□□□□ -1.08
UPF3A-204ENST00000475218 K7ERJ3 54 aa8.29□□□□□ -1.08
UPF3A-204ENST00000475218 COX17Q14061 63 aa8.29□□□□□ -1.08
UPF3A-204ENST00000475218 TMEM223A0PJW6 202 aa8.28□□□□□ -1.08
UPF3A-204ENST00000475218 TTTY13Q9BZ97 58 aa8.28□□□□□ -1.08
UPF3A-204ENST00000475218 TRBV20-1A0A075B6N2 111 aa8.27□□□□□ -1.09
UPF3A-204ENST00000475218 M0R378 163 aa8.27□□□□□ -1.09
UPF3A-204ENST00000475218 TMEM126AQ9H061 195 aa8.27□□□□□ -1.09
UPF3A-204ENST00000475218 PRO0461Q9UI25 63 aa8.27□□□□□ -1.09
UPF3A-204ENST00000475218 ZNF815PA8K554 130 aa8.26□□□□□ -1.09
UPF3A-204ENST00000475218 H3BMG7 143 aa8.26□□□□□ -1.09
UPF3A-204ENST00000475218 PRLHP81277 87 aa8.26□□□□□ -1.09
UPF3A-204ENST00000475218 CRYGAP11844 174 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 UBE2AP49459 152 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 SCGB1D4Q6XE38 83 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 MTURNQ8N3F0 131 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 TSPAN13O95857 204 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 PRR4Q16378 134 aa8.25□□□□□ -1.09
UPF3A-204ENST00000475218 A0A1B0GV72 72 aa8.24□□□□□ -1.09
UPF3A-204ENST00000475218 SFTA2Q6UW10 78 aa8.24□□□□□ -1.09
UPF3A-204ENST00000475218 TYMSOSQ8TAI1 123 aa8.24□□□□□ -1.09
UPF3A-204ENST00000475218 MUC2Q02817 5179 aa8.23□□□□□ -1.09
UPF3A-204ENST00000475218 A0A0U1RRA0 63 aa8.22□□□□□ -1.09
UPF3A-204ENST00000475218 LINC00158P58513 81 aa8.22□□□□□ -1.09
UPF3A-204ENST00000475218 ETDBQ3ZM63 59 aa8.22□□□□□ -1.09
UPF3A-204ENST00000475218 FAM229BQ4G0N7 80 aa8.22□□□□□ -1.09
UPF3A-204ENST00000475218 FAM19A1Q7Z5A9 133 aa8.22□□□□□ -1.09
UPF3A-204ENST00000475218 TSPEAR-AS2P59090 65 aa8.2□□□□□ -1.1
UPF3A-204ENST00000475218 PPDPFLQ8WWR9 84 aa8.2□□□□□ -1.1
UPF3A-204ENST00000475218 PLEKHB2Q96CS7 222 aa8.2□□□□□ -1.1
UPF3A-204ENST00000475218 LEPROTO15243 131 aa8.18□□□□□ -1.1
UPF3A-204ENST00000475218 TEN1Q86WV5 123 aa8.18□□□□□ -1.1
UPF3A-204ENST00000475218 MIR7-3HGQ8N6C7 128 aa8.18□□□□□ -1.1
UPF3A-204ENST00000475218 LGALS3P17931 250 aaKnown RBP8.17□□□□□ -1.1
UPF3A-204ENST00000475218 PRO1854Q9UHT4 67 aa8.17□□□□□ -1.1
UPF3A-204ENST00000475218 A0A0B4J2C4 111 aa8.17□□□□□ -1.1
UPF3A-204ENST00000475218 J3QQQ9 107 aa8.17□□□□□ -1.1
UPF3A-204ENST00000475218 NDUFA12Q9UI09 145 aa8.17□□□□□ -1.1
UPF3A-204ENST00000475218 LOC107984156A0A0G2JMH3 177 aa8.16□□□□□ -1.1
UPF3A-204ENST00000475218 PSMB2P49721 201 aa8.16□□□□□ -1.1
UPF3A-204ENST00000475218 ARL17AQ8IVW1 177 aa8.16□□□□□ -1.1
UPF3A-204ENST00000475218 C3orf22Q8N5N4 141 aa8.16□□□□□ -1.1
UPF3A-204ENST00000475218 KRTAP4-16G5E9R7 235 aaPredicted RBP8.15□□□□□ -1.1
UPF3A-204ENST00000475218 NCR3O14931 201 aa8.15□□□□□ -1.1
UPF3A-204ENST00000475218 SPRR1AP35321 89 aa8.15□□□□□ -1.1
UPF3A-204ENST00000475218 HERV-K104P63124 156 aa8.15□□□□□ -1.1
UPF3A-204ENST00000475218 LINC00304Q8N9R0 145 aa8.15□□□□□ -1.1
UPF3A-204ENST00000475218 RETNLBQ9BQ08 111 aa8.15□□□□□ -1.1
UPF3A-204ENST00000475218 CFC1BP0CG36 223 aa8.15□□□□□ -1.11
UPF3A-204ENST00000475218 CFC1P0CG37 223 aa8.15□□□□□ -1.11
UPF3A-204ENST00000475218 MEIG1Q5JSS6 88 aa8.15□□□□□ -1.11
UPF3A-204ENST00000475218 HIGD2AQ9BW72 106 aa8.15□□□□□ -1.11
UPF3A-204ENST00000475218 SMCPP49901 116 aaPredicted RBP8.14□□□□□ -1.11
UPF3A-204ENST00000475218 SPRR4Q96PI1 79 aa8.14□□□□□ -1.11
UPF3A-204ENST00000475218 KCNQ1DNQ9H478 68 aa8.13□□□□□ -1.11
UPF3A-204ENST00000475218 PRYO14603 147 aa8.12□□□□□ -1.11
UPF3A-204ENST00000475218 SCGB1C2P0DMR2 95 aa8.12□□□□□ -1.11
UPF3A-204ENST00000475218 DAND5Q8N907 189 aa8.12□□□□□ -1.11
UPF3A-204ENST00000475218 TRBV10-3A0A0K0K1G6 114 aa8.12□□□□□ -1.11
UPF3A-204ENST00000475218 CDIP1Q9H305 208 aa8.12□□□□□ -1.11
UPF3A-204ENST00000475218 TCL1BO95988 128 aa8.11□□□□□ -1.11
UPF3A-204ENST00000475218 LINC00337Q8N6G1 96 aa8.11□□□□□ -1.11
UPF3A-204ENST00000475218 ATXN8Q156A1 80 aa8.1□□□□□ -1.11
UPF3A-204ENST00000475218 SMCR5Q8TEV8 140 aa8.1□□□□□ -1.11
UPF3A-204ENST00000475218 EIF4EBP3O60516 100 aaPredicted RBP8.09□□□□□ -1.11
UPF3A-204ENST00000475218 KRTAP3-3Q9BYR6 98 aa8.09□□□□□ -1.11
UPF3A-204ENST00000475218 KRTAP3-2Q9BYR7 98 aa8.09□□□□□ -1.11
UPF3A-204ENST00000475218 A4D1N5 150 aa8.08□□□□□ -1.12
UPF3A-204ENST00000475218 SLC25A20O43772 301 aa8.08□□□□□ -1.12
UPF3A-204ENST00000475218 TIMM17BO60830 172 aa8.08□□□□□ -1.12
UPF3A-204ENST00000475218 SPANXDQ9BXN6 97 aa8.08□□□□□ -1.12
UPF3A-204ENST00000475218 SPANXCQ9NY87 97 aa8.08□□□□□ -1.12
UPF3A-204ENST00000475218 A0A0J9YXY3 114 aa8.07□□□□□ -1.12
UPF3A-204ENST00000475218 ERC2-IT1O76042 136 aa8.07□□□□□ -1.12
UPF3A-204ENST00000475218 IFITM1P13164 125 aa8.07□□□□□ -1.12
UPF3A-204ENST00000475218 SOSTDC1Q6X4U4 206 aa8.07□□□□□ -1.12
UPF3A-204ENST00000475218 B5MCH6 92 aa8.06□□□□□ -1.12
UPF3A-204ENST00000475218 COX6CP09669 75 aa8.06□□□□□ -1.12
UPF3A-204ENST00000475218 ANKRD29Q8N6D5 301 aa8.06□□□□□ -1.12
UPF3A-204ENST00000475218 COPS9Q8WXC6 57 aa8.06□□□□□ -1.12
UPF3A-204ENST00000475218 TRBV10-2A0A0K0K1G8 114 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 174.9 ms