RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 OR2T35Q8NGX2 323 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 PRELID3AQ96N28 172 aa2.18□□□□□ -2.06
HMGB1-207ENST00000468384 TRBV20-1A0A075B6N2 111 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 IGKV2-28A0A075B6P5 120 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 PNMA8CA0A1B0GUJ8 204 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 C11orf86A6NJI1 115 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 A8MWV9 139 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 M0R129 80 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 IGKV2D-28P01615 120 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 IGLV6-57P01721 117 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 SHBGP04278 402 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 AKR1D1P51857 326 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 MRPS10P82664 201 aaKnown RBP2.17□□□□□ -2.06
HMGB1-207ENST00000468384 KRTAP20-2Q3LI61 65 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 PATE2Q6UY27 113 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 NPVFQ9HCQ7 196 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 SCN3BQ9NY72 215 aa2.17□□□□□ -2.06
HMGB1-207ENST00000468384 TRAV7A0A075B6U4 112 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 FXYD6-FXYD2A0A087WZ82 144 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 A0A1B0GU33 70 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 H3BPC8 53 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 J3QLW9 94 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 BCE1O60756 84 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 NCR2O95944 276 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 S100A8P05109 93 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 FGF7P21781 194 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 RPS29P62273 56 aaKnown RBP2.16□□□□□ -2.06
HMGB1-207ENST00000468384 KRTAP25-1Q3LHN0 102 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 SPINT4Q6UDR6 99 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 LYZL1Q6UWQ5 148 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 SNX29P2Q8IUI4 249 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 DEDD2Q8WXF8 326 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 CST9LQ9H4G1 147 aa2.16□□□□□ -2.06
HMGB1-207ENST00000468384 TCL1BO95988 128 aa2.15□□□□□ -2.07
HMGB1-207ENST00000468384 AQP4P55087 323 aa2.15□□□□□ -2.07
HMGB1-207ENST00000468384 TMEM136Q6ZRR5 245 aa2.15□□□□□ -2.07
HMGB1-207ENST00000468384 PSMG3Q9BT73 122 aaPredicted RBP2.15□□□□□ -2.07
HMGB1-207ENST00000468384 TXNL4BQ9NX01 149 aaKnown RBP2.15□□□□□ -2.07
HMGB1-207ENST00000468384 COMMD3Q9UBI1 195 aa2.15□□□□□ -2.07
HMGB1-207ENST00000468384 TIMM9Q9Y5J7 89 aa2.15□□□□□ -2.07
HMGB1-207ENST00000468384 UQCRQO14949 82 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 GNRH2O43555 120 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 TIMM17BO60830 172 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 NMBP08949 121 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 TRGC1P0CF51 173 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 LCN15Q6UWW0 184 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 TMEM91Q6ZNR0 172 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 TMEM191AQ9H0A3 160 aa2.14□□□□□ -2.07
HMGB1-207ENST00000468384 TRBV10-2A0A0K0K1G8 114 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 BBIP1A8MTZ0 92 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 CCDC179H3BU77 68 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 H7C2G1 150 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 HBDP02042 147 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 AKAIN1P0CW23 69 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 MEIG1Q5JSS6 88 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 TEN1Q86WV5 123 aa2.13□□□□□ -2.07
HMGB1-207ENST00000468384 GNG2P59768 71 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 UBE2D2P62837 147 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 KRTAP19-8Q3LI54 63 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 CLLU1Q5K131 121 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 IZUMO2Q6UXV1 221 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 Q6ZQT0 140 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 CHCHD1Q96BP2 118 aaKnown RBP2.12□□□□□ -2.07
HMGB1-207ENST00000468384 CIB3Q96Q77 187 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-207ENST00000468384 AGPAT4-IT1Q9H0P7 198 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 DUSP21Q9H596 190 aa2.12□□□□□ -2.07
HMGB1-207ENST00000468384 LSM2Q9Y333 95 aaKnown RBP2.12□□□□□ -2.07
HMGB1-207ENST00000468384 CCL25O15444 150 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 TPT1P13693 172 aaKnown RBP2.11□□□□□ -2.07
HMGB1-207ENST00000468384 FABP4P15090 132 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 GNG4P50150 75 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 FXYD2P54710 66 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 TEX261Q6UWH6 196 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 KRTAP13-1Q8IUC0 172 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 CYTL1Q9NRR1 136 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 ZFP30Q9Y2G7 519 aa2.11□□□□□ -2.07
HMGB1-207ENST00000468384 H3BRN7 92 aa2.1□□□□□ -2.07
HMGB1-207ENST00000468384 SYNGR2O43760 224 aa2.1□□□□□ -2.07
HMGB1-207ENST00000468384 CD3DP04234 171 aa2.1□□□□□ -2.07
HMGB1-207ENST00000468384 CLEC2BQ92478 149 aa2.1□□□□□ -2.07
HMGB1-207ENST00000468384 R4GN34 69 aa2.1□□□□□ -2.07
HMGB1-207ENST00000468384 TMEM218A2RU14 115 aa2.09□□□□□ -2.07
HMGB1-207ENST00000468384 CFDP00746 253 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-207ENST00000468384 PYYP10082 97 aa2.09□□□□□ -2.07
HMGB1-207ENST00000468384 KRTAP12-2P59991 146 aa2.09□□□□□ -2.07
HMGB1-207ENST00000468384 MRPS36P82909 103 aaKnown RBP2.09□□□□□ -2.07
HMGB1-207ENST00000468384 ZNF818PQ6ZRF7 136 aa2.09□□□□□ -2.07
HMGB1-207ENST00000468384 C8orf59Q8N0T1 100 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-207ENST00000468384 TRBV7-3A0A075B6L6 115 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 IFITM5A6NNB3 132 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 FNDC10F2Z333 226 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 M0R143 59 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 TRGV9Q99603 122 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 NHP2Q9NX24 153 aaKnown RBP2.08□□□□□ -2.08
HMGB1-207ENST00000468384 TPRKBQ9Y3C4 175 aa2.08□□□□□ -2.08
HMGB1-207ENST00000468384 IGKV3OR2-268A0A0C4DH90 116 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 J3QRE1 110 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 LYRM1O43325 122 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 HRES1P13985 223 aa2.07□□□□□ -2.08
HMGB1-207ENST00000468384 HIST1H1DP16402 221 aaKnown RBP2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms