RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 TRAV23DV6A0A075B6W5 121 aa13.66□□□□□ -0.22
PTCH1-210ENST00000468211 A0A0J9YXY3 114 aa13.66□□□□□ -0.22
PTCH1-210ENST00000468211 RPS29P62273 56 aaKnown RBP13.66□□□□□ -0.22
PTCH1-210ENST00000468211 COLCA2A8K830 154 aa13.64□□□□□ -0.23
PTCH1-210ENST00000468211 ST20-AS1Q8NBB2 130 aa13.64□□□□□ -0.23
PTCH1-210ENST00000468211 ZNF73O43830 326 aaPredicted RBP13.63□□□□□ -0.23
PTCH1-210ENST00000468211 E9PLD3 99 aa13.61□□□□□ -0.23
PTCH1-210ENST00000468211 SLC25A20O43772 301 aa13.61□□□□□ -0.23
PTCH1-210ENST00000468211 JOSD1Q15040 202 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-210ENST00000468211 C9orf153Q5TBE3 101 aa13.6□□□□□ -0.23
PTCH1-210ENST00000468211 SLC7A5P1Q8MH63 180 aa13.59□□□□□ -0.23
PTCH1-210ENST00000468211 LITAFQ99732 161 aa13.58□□□□□ -0.24
PTCH1-210ENST00000468211 SEC61BP60468 96 aaKnown RBP13.57□□□□□ -0.24
PTCH1-210ENST00000468211 LINC00308Q8TCZ7 52 aa13.54□□□□□ -0.24
PTCH1-210ENST00000468211 SYS1-DBNDD2H3BUS1 97 aa13.53□□□□□ -0.24
PTCH1-210ENST00000468211 XP32Q5T750 250 aa13.53□□□□□ -0.24
PTCH1-210ENST00000468211 SPANXCQ9NY87 97 aa13.51□□□□□ -0.25
PTCH1-210ENST00000468211 C5orf52A6NGY3 159 aa13.5□□□□□ -0.25
PTCH1-210ENST00000468211 OR13C6PQ8NH95 151 aa13.5□□□□□ -0.25
PTCH1-210ENST00000468211 SPRR1BP22528 89 aa13.49□□□□□ -0.25
PTCH1-210ENST00000468211 LINC01547P58512 204 aaPredicted RBP13.49□□□□□ -0.25
PTCH1-210ENST00000468211 KRTAP9-6A0A140TA67 174 aa13.48□□□□□ -0.25
PTCH1-210ENST00000468211 HINT1P49773 126 aaPredicted RBP13.48□□□□□ -0.25
PTCH1-210ENST00000468211 TTTY13Q9BZ97 58 aa13.48□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BKO60814 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 TIMM17BO60830 172 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BJP06899 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BOP23527 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BBP33778 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BDP58876 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BCP62807 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST2H2BEQ16778 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.47□□□□□ -0.25
PTCH1-210ENST00000468211 LINC01545Q5VT33 79 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BHQ93079 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BNQ99877 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 HIST1H2BMQ99879 126 aa13.47□□□□□ -0.25
PTCH1-210ENST00000468211 CBY1Q9Y3M2 126 aa13.46□□□□□ -0.25
PTCH1-210ENST00000468211 HRCT1Q6UXD1 115 aa13.45□□□□□ -0.26
PTCH1-210ENST00000468211 ZNF815PA8K554 130 aa13.44□□□□□ -0.26
PTCH1-210ENST00000468211 SPANXDQ9BXN6 97 aa13.43□□□□□ -0.26
PTCH1-210ENST00000468211 DHRS4-AS1Q9P1J3 65 aa13.43□□□□□ -0.26
PTCH1-210ENST00000468211 ELOF1P60002 83 aaKnown RBP13.4□□□□□ -0.26
PTCH1-210ENST00000468211 PET117Q6UWS5 81 aa13.4□□□□□ -0.26
PTCH1-210ENST00000468211 COX7BP24311 80 aa13.39□□□□□ -0.27
PTCH1-210ENST00000468211 C6orf99Q4VX62 202 aa13.39□□□□□ -0.27
PTCH1-210ENST00000468211 LCE2CQ5TA81 110 aa13.38□□□□□ -0.27
PTCH1-210ENST00000468211 SLC25A34Q6PIV7 304 aa13.38□□□□□ -0.27
PTCH1-210ENST00000468211 LAMTOR3Q9UHA4 124 aa13.38□□□□□ -0.27
PTCH1-210ENST00000468211 C3orf79P0CE67 100 aa13.37□□□□□ -0.27
PTCH1-210ENST00000468211 Q1RN00 199 aa13.36□□□□□ -0.27
PTCH1-210ENST00000468211 LIMD2Q9BT23 127 aa13.36□□□□□ -0.27
PTCH1-210ENST00000468211 LINC00518Q8N0U6 118 aa13.35□□□□□ -0.27
PTCH1-210ENST00000468211 DEFB105AQ8NG35 78 aa13.35□□□□□ -0.27
PTCH1-210ENST00000468211 C9orf92A6NGG3 77 aa13.34□□□□□ -0.27
PTCH1-210ENST00000468211 TAL2Q16559 108 aa13.33□□□□□ -0.28
PTCH1-210ENST00000468211 KRTAP19-2Q3LHN2 52 aa13.33□□□□□ -0.28
PTCH1-210ENST00000468211 PCOTHQ58A44 107 aa13.31□□□□□ -0.28
PTCH1-210ENST00000468211 SMIM29Q86T20 159 aa13.3□□□□□ -0.28
PTCH1-210ENST00000468211 KRTDAPP60985 99 aa13.29□□□□□ -0.28
PTCH1-210ENST00000468211 TEX49A0A1B0GTD5 131 aa13.28□□□□□ -0.28
PTCH1-210ENST00000468211 H7C2G1 150 aa13.28□□□□□ -0.28
PTCH1-210ENST00000468211 ANKRD39Q53RE8 183 aa13.28□□□□□ -0.28
PTCH1-210ENST00000468211 LCE2DQ5TA82 110 aaPredicted RBP13.28□□□□□ -0.28
PTCH1-210ENST00000468211 A0A0G2JQZ4 141 aa13.27□□□□□ -0.29
PTCH1-210ENST00000468211 CD164Q04900 197 aa13.27□□□□□ -0.29
PTCH1-210ENST00000468211 SCGB1D4Q6XE38 83 aa13.27□□□□□ -0.29
PTCH1-210ENST00000468211 PRO1933Q9H354 126 aa13.27□□□□□ -0.29
PTCH1-210ENST00000468211 TRBV7-6A0A0J9YX20 115 aa13.26□□□□□ -0.29
PTCH1-210ENST00000468211 IGLV8-61A0A075B6I0 122 aa13.24□□□□□ -0.29
PTCH1-210ENST00000468211 COA6Q5JTJ3 125 aaKnown RBP13.24□□□□□ -0.29
PTCH1-210ENST00000468211 IGLV5-48A0A075B6I7 105 aa13.22□□□□□ -0.29
PTCH1-210ENST00000468211 A0A1B0GWB2 263 aa13.22□□□□□ -0.29
PTCH1-210ENST00000468211 A6NDN8 102 aa13.22□□□□□ -0.29
PTCH1-210ENST00000468211 ATOH7Q8N100 152 aa13.22□□□□□ -0.29
PTCH1-210ENST00000468211 MUSTN1Q8IVN3 82 aa13.21□□□□□ -0.29
PTCH1-210ENST00000468211 IFITM1P13164 125 aa13.2□□□□□ -0.3
PTCH1-210ENST00000468211 AKR1D1P51857 326 aa13.2□□□□□ -0.3
PTCH1-210ENST00000468211 MT1HP80294 61 aa13.2□□□□□ -0.3
PTCH1-210ENST00000468211 Q5XG85 94 aa13.2□□□□□ -0.3
PTCH1-210ENST00000468211 PCP2Q8IVA1 136 aa13.2□□□□□ -0.3
PTCH1-210ENST00000468211 C1orf195Q5TG92 126 aa13.19□□□□□ -0.3
PTCH1-210ENST00000468211 COPS9Q8WXC6 57 aa13.16□□□□□ -0.3
PTCH1-210ENST00000468211 Q6ZVH6 145 aa13.15□□□□□ -0.3
PTCH1-210ENST00000468211 C20orf202A1L168 122 aa13.14□□□□□ -0.31
PTCH1-210ENST00000468211 SMIM11BQ8TCY0 68 aa13.14□□□□□ -0.31
PTCH1-210ENST00000468211 FSIP2Q5CZC0 6907 aa13.12□□□□□ -0.31
PTCH1-210ENST00000468211 A4D1N5 150 aa13.1□□□□□ -0.31
PTCH1-210ENST00000468211 TRAV13-2A0A0B4J235 113 aa13.08□□□□□ -0.32
PTCH1-210ENST00000468211 RPL37P61927 97 aaKnown RBP13.06□□□□□ -0.32
PTCH1-210ENST00000468211 CRCT1Q9UGL9 99 aa13.06□□□□□ -0.32
PTCH1-210ENST00000468211 NHP2Q9NX24 153 aaKnown RBP13.05□□□□□ -0.32
PTCH1-210ENST00000468211 CFC1BP0CG36 223 aa13□□□□□ -0.33
PTCH1-210ENST00000468211 LINC00575Q6W349 94 aa13□□□□□ -0.33
PTCH1-210ENST00000468211 LORP23490 312 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-210ENST00000468211 TCL1BO95988 128 aa12.98□□□□□ -0.33
PTCH1-210ENST00000468211 KRTAP10-6P60371 365 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-210ENST00000468211 SNRPEP62304 92 aaKnown RBP12.97□□□□□ -0.33
PTCH1-210ENST00000468211 F8WEM9 126 aa12.96□□□□□ -0.33
PTCH1-210ENST00000468211 Q6ZQY7 126 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms