RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 KRTAP13-1Q8IUC0 172 aa11.99□□□□□ -0.49
COL9A3-204ENST00000463487 LINC01600Q96MT4 127 aa11.99□□□□□ -0.49
COL9A3-204ENST00000463487 HINT1P49773 126 aaPredicted RBP11.98□□□□□ -0.49
COL9A3-204ENST00000463487 HIST1H4GQ99525 98 aa11.98□□□□□ -0.49
COL9A3-204ENST00000463487 ZNF73O43830 326 aaPredicted RBP11.95□□□□□ -0.5
COL9A3-204ENST00000463487 MYCBP2O75592 4640 aa11.95□□□□□ -0.5
COL9A3-204ENST00000463487 TRAV13-2A0A0B4J235 113 aa11.94□□□□□ -0.5
COL9A3-204ENST00000463487 A6NDN8 102 aa11.94□□□□□ -0.5
COL9A3-204ENST00000463487 HIGD2AQ9BW72 106 aa11.94□□□□□ -0.5
COL9A3-204ENST00000463487 HIGD1BQ9P298 99 aa11.94□□□□□ -0.5
COL9A3-204ENST00000463487 KRTAP4-16G5E9R7 235 aaPredicted RBP11.92□□□□□ -0.5
COL9A3-204ENST00000463487 DMBT1Q9UGM3 2413 aaPredicted RBP11.91□□□□□ -0.5
COL9A3-204ENST00000463487 ZNF706Q9Y5V0 76 aaPredicted RBP11.91□□□□□ -0.5
COL9A3-204ENST00000463487 B5MCH6 92 aa11.9□□□□□ -0.5
COL9A3-204ENST00000463487 RPL13AP40429 203 aaKnown RBP11.9□□□□□ -0.5
COL9A3-204ENST00000463487 Q6ZRX8 168 aa11.9□□□□□ -0.5
COL9A3-204ENST00000463487 A4D1N5 150 aa11.89□□□□□ -0.51
COL9A3-204ENST00000463487 KRTAP1-4P0C5Y4 121 aa11.88□□□□□ -0.51
COL9A3-204ENST00000463487 TAL2Q16559 108 aa11.87□□□□□ -0.51
COL9A3-204ENST00000463487 MT1HL1P0DM35 61 aa11.86□□□□□ -0.51
COL9A3-204ENST00000463487 C2orf91Q6ZV80 131 aa11.85□□□□□ -0.51
COL9A3-204ENST00000463487 UQCR10Q9UDW1 63 aa11.85□□□□□ -0.51
COL9A3-204ENST00000463487 TMEM238LA0A1B0GVL6 79 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 A6NJY4 79 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 SMIM6P0DI80 62 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 CRYGAP11844 174 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 C6orf99Q4VX62 202 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 PRR26Q8N8Z3 221 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 SMCR5Q8TEV8 140 aa11.84□□□□□ -0.51
COL9A3-204ENST00000463487 KRTAP10-8P60410 259 aa11.83□□□□□ -0.52
COL9A3-204ENST00000463487 FAM229BQ4G0N7 80 aa11.83□□□□□ -0.52
COL9A3-204ENST00000463487 TRBV7-6A0A0J9YX20 115 aa11.82□□□□□ -0.52
COL9A3-204ENST00000463487 COX7BP24311 80 aa11.82□□□□□ -0.52
COL9A3-204ENST00000463487 DHRS4-AS1Q9P1J3 65 aa11.82□□□□□ -0.52
COL9A3-204ENST00000463487 A0A1B0GWB2 263 aa11.81□□□□□ -0.52
COL9A3-204ENST00000463487 SPRR4Q96PI1 79 aa11.81□□□□□ -0.52
COL9A3-204ENST00000463487 LRP1Q07954 4544 aaKnown RBP11.81□□□□□ -0.52
COL9A3-204ENST00000463487 ELOF1P60002 83 aaKnown RBP11.8□□□□□ -0.52
COL9A3-204ENST00000463487 CEND1Q8N111 149 aa11.8□□□□□ -0.52
COL9A3-204ENST00000463487 RAB37Q96AX2 223 aa11.8□□□□□ -0.52
COL9A3-204ENST00000463487 C12orf57Q99622 126 aa11.8□□□□□ -0.52
COL9A3-204ENST00000463487 Q9BRP9 147 aa11.8□□□□□ -0.52
COL9A3-204ENST00000463487 VAMP3Q15836 100 aa11.79□□□□□ -0.52
COL9A3-204ENST00000463487 SMIM11BQ8TCY0 68 aa11.79□□□□□ -0.52
COL9A3-204ENST00000463487 FAT3Q8TDW7 4589 aa11.79□□□□□ -0.52
COL9A3-204ENST00000463487 HSD52Q0P140 79 aa11.78□□□□□ -0.52
COL9A3-204ENST00000463487 A0A0B4J2C4 111 aa11.76□□□□□ -0.53
COL9A3-204ENST00000463487 TYMSOSQ8TAI1 123 aa11.76□□□□□ -0.53
COL9A3-204ENST00000463487 ANAPC11Q9NYG5 84 aa11.76□□□□□ -0.53
COL9A3-204ENST00000463487 A0A087X002 238 aa11.75□□□□□ -0.53
COL9A3-204ENST00000463487 NHP2Q9NX24 153 aaKnown RBP11.75□□□□□ -0.53
COL9A3-204ENST00000463487 ERC2-IT1O76042 136 aa11.74□□□□□ -0.53
COL9A3-204ENST00000463487 CFC1BP0CG36 223 aa11.74□□□□□ -0.53
COL9A3-204ENST00000463487 CFC1P0CG37 223 aa11.74□□□□□ -0.53
COL9A3-204ENST00000463487 GAGE2AQ6NT46 116 aa11.73□□□□□ -0.53
COL9A3-204ENST00000463487 SLC25A20O43772 301 aa11.72□□□□□ -0.53
COL9A3-204ENST00000463487 LOC105371267A0A1B0GV96 52 aa11.71□□□□□ -0.53
COL9A3-204ENST00000463487 LINC00483Q53H64 154 aa11.71□□□□□ -0.53
COL9A3-204ENST00000463487 BVES-AS1Q5T3Y7 98 aa11.71□□□□□ -0.53
COL9A3-204ENST00000463487 H7C2G1 150 aa11.7□□□□□ -0.54
COL9A3-204ENST00000463487 FXYD2P54710 66 aa11.7□□□□□ -0.54
COL9A3-204ENST00000463487 Q1RN00 199 aa11.69□□□□□ -0.54
COL9A3-204ENST00000463487 PRO1854Q9UHT4 67 aa11.69□□□□□ -0.54
COL9A3-204ENST00000463487 PRO1933Q9H354 126 aa11.68□□□□□ -0.54
COL9A3-204ENST00000463487 KRTAP13-2Q52LG2 175 aa11.67□□□□□ -0.54
COL9A3-204ENST00000463487 TSTD3H0UI37 97 aa11.66□□□□□ -0.54
COL9A3-204ENST00000463487 SNCGO76070 127 aa11.65□□□□□ -0.54
COL9A3-204ENST00000463487 ST20-AS1Q8NBB2 130 aa11.65□□□□□ -0.54
COL9A3-204ENST00000463487 TNXBP22105 4242 aa11.65□□□□□ -0.54
COL9A3-204ENST00000463487 C3orf22Q8N5N4 141 aa11.63□□□□□ -0.55
COL9A3-204ENST00000463487 LINC00575Q6W349 94 aa11.62□□□□□ -0.55
COL9A3-204ENST00000463487 LINC00304Q8N9R0 145 aa11.62□□□□□ -0.55
COL9A3-204ENST00000463487 IGLV9-49A0A0B4J1Y8 123 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 TEX49A0A1B0GTD5 131 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 hADV29S1A0JD25 119 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 H0YGX0 51 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 M0R143 59 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 SPRR1BP22528 89 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 DEFB105AQ8NG35 78 aa11.61□□□□□ -0.55
COL9A3-204ENST00000463487 LAMTOR3Q9UHA4 124 aa11.6□□□□□ -0.55
COL9A3-204ENST00000463487 MOBPQ13875 183 aa11.59□□□□□ -0.55
COL9A3-204ENST00000463487 C4orf48Q5BLP8 95 aa11.59□□□□□ -0.55
COL9A3-204ENST00000463487 C9orf153Q5TBE3 101 aa11.59□□□□□ -0.55
COL9A3-204ENST00000463487 CTAG1AP78358 180 aa11.58□□□□□ -0.56
COL9A3-204ENST00000463487 SPAG11AQ6PDA7 123 aa11.58□□□□□ -0.56
COL9A3-204ENST00000463487 SSBP3-AS1Q7Z2R9 100 aa11.58□□□□□ -0.56
COL9A3-204ENST00000463487 HERC1Q15751 4861 aa11.57□□□□□ -0.56
COL9A3-204ENST00000463487 IGLV5-48A0A075B6I7 105 aa11.56□□□□□ -0.56
COL9A3-204ENST00000463487 PSMB2P49721 201 aa11.56□□□□□ -0.56
COL9A3-204ENST00000463487 Q8NBF4 154 aa11.56□□□□□ -0.56
COL9A3-204ENST00000463487 K7ERJ3 54 aa11.55□□□□□ -0.56
COL9A3-204ENST00000463487 COX6CP09669 75 aa11.55□□□□□ -0.56
COL9A3-204ENST00000463487 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.55□□□□□ -0.56
COL9A3-204ENST00000463487 TSPAN13O95857 204 aa11.54□□□□□ -0.56
COL9A3-204ENST00000463487 Q6ZQY7 126 aa11.54□□□□□ -0.56
COL9A3-204ENST00000463487 A0A1B0GX51 115 aa11.51□□□□□ -0.57
COL9A3-204ENST00000463487 TRIAP1O43715 76 aa11.51□□□□□ -0.57
COL9A3-204ENST00000463487 GHRHP01286 108 aa11.51□□□□□ -0.57
COL9A3-204ENST00000463487 F8WEM9 126 aa11.5□□□□□ -0.57
COL9A3-204ENST00000463487 OCIAD2Q56VL3 154 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms