RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	LITAF	Q99732	161 aa		6.33	□□□□□ -1.4
PTPN7-204	ENST00000462815	PRO1933	Q9H354	126 aa		6.33	□□□□□ -1.4
PTPN7-204	ENST00000462815	SND1-IT1	Q9HBX3	110 aa		6.33	□□□□□ -1.4
PTPN7-204	ENST00000462815	SMIM13	P0DJ93	91 aa		6.32	□□□□□ -1.4
PTPN7-204	ENST00000462815	ADAMTSL4-AS1	Q5T5F5	129 aa		6.32	□□□□□ -1.4
PTPN7-204	ENST00000462815	LCE2D	Q5TA82	110 aa	Predicted RBP	6.32	□□□□□ -1.4
PTPN7-204	ENST00000462815	SLC25A34	Q6PIV7	304 aa		6.32	□□□□□ -1.4
PTPN7-204	ENST00000462815	ERG28	Q9UKR5	140 aa		6.32	□□□□□ -1.4
PTPN7-204	ENST00000462815	TIMM17B	O60830	172 aa		6.31	□□□□□ -1.4
PTPN7-204	ENST00000462815	PFN2	P35080	140 aa		6.31	□□□□□ -1.4
PTPN7-204	ENST00000462815	COX17	Q14061	63 aa		6.31	□□□□□ -1.4
PTPN7-204	ENST00000462815	ASB16-AS1	Q495Z4	193 aa		6.31	□□□□□ -1.4
PTPN7-204	ENST00000462815	C2orf91	Q6ZV80	131 aa		6.31	□□□□□ -1.4
PTPN7-204	ENST00000462815	MEIG1	Q5JSS6	88 aa		6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815	FP248	Q71RG6	208 aa	Predicted RBP	6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815	SPRR4	Q96PI1	79 aa		6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815	MIEN1	Q9BRT3	115 aa		6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815	HIGD1B	Q9P298	99 aa		6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815	UQCR10	Q9UDW1	63 aa		6.3	□□□□□ -1.4
PTPN7-204	ENST00000462815		A0A0U1RRA0	63 aa		6.29	□□□□□ -1.4
PTPN7-204	ENST00000462815	LINC00587	B1AMM8	73 aa		6.29	□□□□□ -1.4
PTPN7-204	ENST00000462815	LINC00158	P58513	81 aa		6.29	□□□□□ -1.4
PTPN7-204	ENST00000462815	SPAG11A	Q6PDA7	123 aa		6.29	□□□□□ -1.4
PTPN7-204	ENST00000462815	SCGB1D4	Q6XE38	83 aa		6.29	□□□□□ -1.4
PTPN7-204	ENST00000462815	LINC01547	P58512	204 aa	Predicted RBP	6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	MIR7-3HG	Q8N6C7	128 aa		6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	DAND5	Q8N907	189 aa		6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	SPANXD	Q9BXN6	97 aa		6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	SPANXB1	Q9NS25	103 aa	Predicted RBP	6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	SPANXC	Q9NY87	97 aa		6.28	□□□□□ -1.4
PTPN7-204	ENST00000462815	LOC107984156	A0A0G2JMH3	177 aa		6.27	□□□□□ -1.41
PTPN7-204	ENST00000462815	EIF4EBP3	O60516	100 aa	Predicted RBP	6.27	□□□□□ -1.41
PTPN7-204	ENST00000462815	SOSTDC1	Q6X4U4	206 aa		6.27	□□□□□ -1.41
PTPN7-204	ENST00000462815	ARL17A	Q8IVW1	177 aa		6.27	□□□□□ -1.41
PTPN7-204	ENST00000462815	RPL24	P83731	157 aa	Known RBP	6.26	□□□□□ -1.41
PTPN7-204	ENST00000462815	LINC00337	Q8N6G1	96 aa		6.26	□□□□□ -1.41
PTPN7-204	ENST00000462815	HIGD2A	Q9BW72	106 aa		6.26	□□□□□ -1.41
PTPN7-204	ENST00000462815	CRCT1	Q9UGL9	99 aa		6.26	□□□□□ -1.41
PTPN7-204	ENST00000462815	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815	TSTD3	H0UI37	97 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815	SPRR1A	P35321	89 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815	LCE2C	Q5TA81	110 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815		Q6ZVH6	145 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815		Q8NBF4	154 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815	LINC00308	Q8TCZ7	52 aa		6.25	□□□□□ -1.41
PTPN7-204	ENST00000462815	KRTAP19-2	Q3LHN2	52 aa		6.24	□□□□□ -1.41
PTPN7-204	ENST00000462815	MUSTN1	Q8IVN3	82 aa		6.24	□□□□□ -1.41
PTPN7-204	ENST00000462815	IFITM1	P13164	125 aa		6.23	□□□□□ -1.41
PTPN7-204	ENST00000462815	NPC2	P61916	151 aa		6.23	□□□□□ -1.41
PTPN7-204	ENST00000462815	TAL2	Q16559	108 aa		6.23	□□□□□ -1.41
PTPN7-204	ENST00000462815	LINC00483	Q53H64	154 aa		6.23	□□□□□ -1.41
PTPN7-204	ENST00000462815	DDT	P30046	118 aa		6.22	□□□□□ -1.41
PTPN7-204	ENST00000462815	SMCR5	Q8TEV8	140 aa		6.22	□□□□□ -1.41
PTPN7-204	ENST00000462815	HIST1H4G	Q99525	98 aa		6.22	□□□□□ -1.41
PTPN7-204	ENST00000462815	PRY	O14603	147 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	SPINK1	P00995	79 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	HSD52	Q0P140	79 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	C4orf48	Q5BLP8	95 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	CEND1	Q8N111	149 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815		Q8N377	158 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	KCNQ1DN	Q9H478	68 aa		6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	ZNF706	Q9Y5V0	76 aa	Predicted RBP	6.21	□□□□□ -1.42
PTPN7-204	ENST00000462815	NDUFC2	O95298	119 aa		6.2	□□□□□ -1.42
PTPN7-204	ENST00000462815	XP32	Q5T750	250 aa		6.2	□□□□□ -1.42
PTPN7-204	ENST00000462815		A4D1N5	150 aa		6.19	□□□□□ -1.42
PTPN7-204	ENST00000462815	SEC61B	P60468	96 aa	Known RBP	6.19	□□□□□ -1.42
PTPN7-204	ENST00000462815	RPS29	P62273	56 aa	Known RBP	6.19	□□□□□ -1.42
PTPN7-204	ENST00000462815	COPS9	Q8WXC6	57 aa		6.19	□□□□□ -1.42
PTPN7-204	ENST00000462815	FXYD2	P54710	66 aa		6.18	□□□□□ -1.42
PTPN7-204	ENST00000462815	NCR3	O14931	201 aa		6.17	□□□□□ -1.42
PTPN7-204	ENST00000462815	ERC2-IT1	O76042	136 aa		6.17	□□□□□ -1.42
PTPN7-204	ENST00000462815	BVES-AS1	Q5T3Y7	98 aa		6.17	□□□□□ -1.42
PTPN7-204	ENST00000462815	TRBV10-2	A0A0K0K1G8	114 aa		6.16	□□□□□ -1.42
PTPN7-204	ENST00000462815	CFC1B	P0CG36	223 aa		6.16	□□□□□ -1.42
PTPN7-204	ENST00000462815	CFC1	P0CG37	223 aa		6.16	□□□□□ -1.42
PTPN7-204	ENST00000462815	HINT1	P49773	126 aa	Predicted RBP	6.16	□□□□□ -1.42
PTPN7-204	ENST00000462815	TRBV10-3	A0A0K0K1G6	114 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815	PCP4L1	A6NKN8	68 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815		B5MCH6	92 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815	MT1H	P80294	61 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815	MOBP	Q13875	183 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815		Q9BRP9	147 aa		6.15	□□□□□ -1.42
PTPN7-204	ENST00000462815		A0A1B0GWB2	263 aa		6.14	□□□□□ -1.43
PTPN7-204	ENST00000462815	SSBP3-AS1	Q7Z2R9	100 aa		6.14	□□□□□ -1.43
PTPN7-204	ENST00000462815		A0A0B4J2C4	111 aa		6.13	□□□□□ -1.43
PTPN7-204	ENST00000462815	ETDC	A0A1B0GVM5	59 aa		6.13	□□□□□ -1.43
PTPN7-204	ENST00000462815		M0R143	59 aa		6.13	□□□□□ -1.43
PTPN7-204	ENST00000462815	IGLV6-57	P01721	117 aa		6.13	□□□□□ -1.43
PTPN7-204	ENST00000462815	GAGE2A	Q6NT46	116 aa		6.13	□□□□□ -1.43
PTPN7-204	ENST00000462815	IGLV9-49	A0A0B4J1Y8	123 aa		6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	TMEM238L	A0A1B0GVL6	79 aa		6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815		A6NJY4	79 aa		6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	SLC25A20	O43772	301 aa		6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	SNHG12	Q9BXW3	62 aa		6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	NHP2	Q9NX24	153 aa	Known RBP	6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	FLG	P20930	4061 aa	Predicted RBP	6.12	□□□□□ -1.43
PTPN7-204	ENST00000462815	TRAV13-2	A0A0B4J235	113 aa		6.11	□□□□□ -1.43
PTPN7-204	ENST00000462815		A6NDN8	102 aa		6.1	□□□□□ -1.43
PTPN7-204	ENST00000462815		K7ERJ3	54 aa		6.1	□□□□□ -1.43
PTPN7-204	ENST00000462815		Q6ZRX8	168 aa		6.1	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 127.8 ms