RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 KRTAP7-1Q8IUC3 87 aa7.35□□□□□ -1.23
VPS52-213ENST00000461743 ANKRD29Q8N6D5 301 aa7.35□□□□□ -1.23
VPS52-213ENST00000461743 XAGE1AQ9HD64 81 aa7.35□□□□□ -1.23
VPS52-213ENST00000461743 IGLV5-37A0A075B6J1 123 aa7.34□□□□□ -1.23
VPS52-213ENST00000461743 PLEKHB2Q96CS7 222 aa7.34□□□□□ -1.23
VPS52-213ENST00000461743 PSORS1C2Q9UIG4 136 aa7.34□□□□□ -1.23
VPS52-213ENST00000461743 LEPROTO15243 131 aa7.33□□□□□ -1.24
VPS52-213ENST00000461743 UBE2BP63146 152 aa7.33□□□□□ -1.24
VPS52-213ENST00000461743 SERTAD4-AS1Q5TG53 156 aa7.33□□□□□ -1.24
VPS52-213ENST00000461743 SPINK6Q6UWN8 80 aa7.33□□□□□ -1.24
VPS52-213ENST00000461743 SS18L2Q9UHA2 77 aa7.33□□□□□ -1.24
VPS52-213ENST00000461743 A0A0B4J2C4 111 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 SNCGO76070 127 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 SCGB1C2P0DMR2 95 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 PFN2P35080 140 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 PRO1854Q9UHT4 67 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 NDUFA12Q9UI09 145 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 C22orf24Q9Y442 160 aa7.32□□□□□ -1.24
VPS52-213ENST00000461743 SLC25A20O43772 301 aa7.31□□□□□ -1.24
VPS52-213ENST00000461743 RPL13AP40429 203 aaKnown RBP7.31□□□□□ -1.24
VPS52-213ENST00000461743 NDUFV3P56181 108 aaKnown RBP7.31□□□□□ -1.24
VPS52-213ENST00000461743 C1orf137Q5JT78 98 aa7.31□□□□□ -1.24
VPS52-213ENST00000461743 MRPL55Q7Z7F7 128 aaKnown RBP7.31□□□□□ -1.24
VPS52-213ENST00000461743 SND1-IT1Q9HBX3 110 aa7.31□□□□□ -1.24
VPS52-213ENST00000461743 J3QL48 77 aa7.3□□□□□ -1.24
VPS52-213ENST00000461743 J3QQQ9 107 aa7.3□□□□□ -1.24
VPS52-213ENST00000461743 CFC1BP0CG36 223 aa7.3□□□□□ -1.24
VPS52-213ENST00000461743 CFC1P0CG37 223 aa7.3□□□□□ -1.24
VPS52-213ENST00000461743 NKAPP1Q8N9T2 125 aa7.3□□□□□ -1.24
VPS52-213ENST00000461743 IFITM1P13164 125 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 TSPEAR-AS2P59090 65 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 ATXN8Q156A1 80 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 MEIG1Q5JSS6 88 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 REG3GQ6UW15 175 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 TNXBP22105 4242 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 HERC1Q15751 4861 aa7.29□□□□□ -1.24
VPS52-213ENST00000461743 IGLV7-43P04211 117 aa7.28□□□□□ -1.24
VPS52-213ENST00000461743 LGALS3P17931 250 aaKnown RBP7.28□□□□□ -1.24
VPS52-213ENST00000461743 LINC00158P58513 81 aa7.28□□□□□ -1.24
VPS52-213ENST00000461743 B5MCH6 92 aa7.27□□□□□ -1.25
VPS52-213ENST00000461743 C9JAW5 83 aa7.27□□□□□ -1.25
VPS52-213ENST00000461743 VPREB1P12018 145 aa7.27□□□□□ -1.25
VPS52-213ENST00000461743 KRTAP11-1Q8IUC1 163 aa7.27□□□□□ -1.25
VPS52-213ENST00000461743 SPANXDQ9BXN6 97 aa7.27□□□□□ -1.25
VPS52-213ENST00000461743 TRBV10-2A0A0K0K1G8 114 aa7.26□□□□□ -1.25
VPS52-213ENST00000461743 FAM240AA0A1B0GVK7 77 aa7.26□□□□□ -1.25
VPS52-213ENST00000461743 DIRC1Q969H9 104 aa7.26□□□□□ -1.25
VPS52-213ENST00000461743 H3BT86 120 aa7.25□□□□□ -1.25
VPS52-213ENST00000461743 MIR7-3HGQ8N6C7 128 aa7.25□□□□□ -1.25
VPS52-213ENST00000461743 LINC00167Q96N53 147 aa7.25□□□□□ -1.25
VPS52-213ENST00000461743 A4D1N5 150 aa7.23□□□□□ -1.25
VPS52-213ENST00000461743 H0Y9J4 135 aa7.23□□□□□ -1.25
VPS52-213ENST00000461743 CCDC179H3BU77 68 aa7.23□□□□□ -1.25
VPS52-213ENST00000461743 BCE1O60756 84 aa7.23□□□□□ -1.25
VPS52-213ENST00000461743 TMEM126AQ9H061 195 aa7.23□□□□□ -1.25
VPS52-213ENST00000461743 IGLV1-50A0A075B6I6 118 aa7.22□□□□□ -1.25
VPS52-213ENST00000461743 TRBV7-7A0A0K0K1E9 115 aa7.22□□□□□ -1.25
VPS52-213ENST00000461743 A0A0U1RRA0 63 aa7.22□□□□□ -1.25
VPS52-213ENST00000461743 ZNF861PO60384 105 aa7.22□□□□□ -1.25
VPS52-213ENST00000461743 M0R378 163 aa7.21□□□□□ -1.26
VPS52-213ENST00000461743 EIF4EBP3O60516 100 aaPredicted RBP7.21□□□□□ -1.26
VPS52-213ENST00000461743 RPL28P46779 137 aaKnown RBP7.21□□□□□ -1.26
VPS52-213ENST00000461743 Q1RN00 199 aa7.21□□□□□ -1.26
VPS52-213ENST00000461743 A0A0J9YXY3 114 aa7.2□□□□□ -1.26
VPS52-213ENST00000461743 RPL37AP8A6NKH3 93 aa7.2□□□□□ -1.26
VPS52-213ENST00000461743 TIMM17BO60830 172 aa7.2□□□□□ -1.26
VPS52-213ENST00000461743 MT1HL1P0DM35 61 aa7.2□□□□□ -1.26
VPS52-213ENST00000461743 Q8NDZ9 215 aa7.2□□□□□ -1.26
VPS52-213ENST00000461743 IGKV2-28A0A075B6P5 120 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 NDUFC2O95298 119 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 IGKV2D-28P01615 120 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 MUSTN1Q8IVN3 82 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 SMIM20Q8N5G0 67 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 IMUPQ9GZP8 106 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 SPANXCQ9NY87 97 aa7.19□□□□□ -1.26
VPS52-213ENST00000461743 PRYO14603 147 aa7.18□□□□□ -1.26
VPS52-213ENST00000461743 TRIAP1O43715 76 aa7.18□□□□□ -1.26
VPS52-213ENST00000461743 ACYP1P07311 99 aa7.18□□□□□ -1.26
VPS52-213ENST00000461743 COX6CP09669 75 aa7.18□□□□□ -1.26
VPS52-213ENST00000461743 KRTAP13-1Q8IUC0 172 aa7.18□□□□□ -1.26
VPS52-213ENST00000461743 UBE2AP49459 152 aa7.17□□□□□ -1.26
VPS52-213ENST00000461743 DAND5Q8N907 189 aa7.17□□□□□ -1.26
VPS52-213ENST00000461743 TEX49A0A1B0GTD5 131 aa7.16□□□□□ -1.26
VPS52-213ENST00000461743 LST1O00453 97 aa7.16□□□□□ -1.26
VPS52-213ENST00000461743 H7C2G1 150 aa7.15□□□□□ -1.26
VPS52-213ENST00000461743 NCR3O14931 201 aa7.15□□□□□ -1.26
VPS52-213ENST00000461743 KRTAP1-4P0C5Y4 121 aa7.15□□□□□ -1.26
VPS52-213ENST00000461743 COPS9Q8WXC6 57 aa7.15□□□□□ -1.26
VPS52-213ENST00000461743 LITAFQ99732 161 aa7.15□□□□□ -1.26
VPS52-213ENST00000461743 KRTAP10-8P60410 259 aa7.14□□□□□ -1.27
VPS52-213ENST00000461743 ADAMTSL4-AS1Q5T5F5 129 aa7.14□□□□□ -1.27
VPS52-213ENST00000461743 PPDPFQ9H3Y8 114 aa7.14□□□□□ -1.27
VPS52-213ENST00000461743 KCNQ1DNQ9H478 68 aa7.14□□□□□ -1.27
VPS52-213ENST00000461743 SPRR1AP35321 89 aa7.13□□□□□ -1.27
VPS52-213ENST00000461743 FAM19A1Q7Z5A9 133 aa7.13□□□□□ -1.27
VPS52-213ENST00000461743 LINC00337Q8N6G1 96 aa7.13□□□□□ -1.27
VPS52-213ENST00000461743 TRBV10-3A0A0K0K1G6 114 aa7.12□□□□□ -1.27
VPS52-213ENST00000461743 SOSTDC1Q6X4U4 206 aa7.12□□□□□ -1.27
VPS52-213ENST00000461743 LINC00308Q8TCZ7 52 aa7.12□□□□□ -1.27
VPS52-213ENST00000461743 IGLV6-57P01721 117 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms