RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 C14orf177Q52M58 125 aa13.57□□□□□ -0.24
PTPRF-207ENST00000436724 Q6ZR54 194 aa13.57□□□□□ -0.24
PTPRF-207ENST00000436724 KRTAP7-1Q8IUC3 87 aa13.57□□□□□ -0.24
PTPRF-207ENST00000436724 NKAPP1Q8N9T2 125 aa13.56□□□□□ -0.24
PTPRF-207ENST00000436724 A0A096LNI7 61 aa13.54□□□□□ -0.24
PTPRF-207ENST00000436724 B5MCH6 92 aa13.54□□□□□ -0.24
PTPRF-207ENST00000436724 IGKV2-24A0A0C4DH68 120 aa13.54□□□□□ -0.24
PTPRF-207ENST00000436724 C7orf33Q8WU49 177 aa13.54□□□□□ -0.24
PTPRF-207ENST00000436724 FAM236AA0A1B0GUQ0 79 aa13.53□□□□□ -0.24
PTPRF-207ENST00000436724 FAM236BA0A1B0GV22 79 aa13.53□□□□□ -0.24
PTPRF-207ENST00000436724 LINC00846Q9NV44 126 aa13.53□□□□□ -0.24
PTPRF-207ENST00000436724 ZNF73O43830 326 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-207ENST00000436724 FAM19A5Q7Z5A7 132 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-207ENST00000436724 PLA2G2DQ9UNK4 145 aa13.52□□□□□ -0.24
PTPRF-207ENST00000436724 LINC00575Q6W349 94 aa13.51□□□□□ -0.25
PTPRF-207ENST00000436724 DIRC1Q969H9 104 aa13.51□□□□□ -0.25
PTPRF-207ENST00000436724 TMEM256-PLSCR3K7ERE1 68 aa13.5□□□□□ -0.25
PTPRF-207ENST00000436724 LINC00476Q8WZB0 136 aa13.5□□□□□ -0.25
PTPRF-207ENST00000436724 RPL37AP8A6NKH3 93 aa13.49□□□□□ -0.25
PTPRF-207ENST00000436724 C16orf90A8MZG2 172 aa13.49□□□□□ -0.25
PTPRF-207ENST00000436724 CCKP06307 115 aa13.48□□□□□ -0.25
PTPRF-207ENST00000436724 A0A087WTM6 91 aa13.48□□□□□ -0.25
PTPRF-207ENST00000436724 FUSP35637 526 aaKnown RBP eCLIP13.48□□□□□ -0.253e-9■■■■■ 29.2
PTPRF-207ENST00000436724 C9orf163Q8N9P6 203 aa13.48□□□□□ -0.25
PTPRF-207ENST00000436724 JMJD7-PLA2G4BH0Y9G9 81 aa13.47□□□□□ -0.25
PTPRF-207ENST00000436724 CHTF8P0CG12 524 aa13.47□□□□□ -0.25
PTPRF-207ENST00000436724 IGLV5-37A0A075B6J1 123 aa13.47□□□□□ -0.25
PTPRF-207ENST00000436724 A0A1W2PNN7 141 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 hADV29S1A0JD25 119 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 C1orf134Q5TEV5 83 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 KCNQ1DNQ9H478 68 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 SS18L2Q9UHA2 77 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 COX7BP24311 80 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 ELOF1P60002 83 aaKnown RBP13.44□□□□□ -0.26
PTPRF-207ENST00000436724 Q6JHZ5 121 aa13.44□□□□□ -0.26
PTPRF-207ENST00000436724 MRPL55Q7Z7F7 128 aaKnown RBP13.44□□□□□ -0.26
PTPRF-207ENST00000436724 IGLV1-50A0A075B6I6 118 aa13.42□□□□□ -0.26
PTPRF-207ENST00000436724 IGKV3D-7A0A0C4DH55 119 aa13.42□□□□□ -0.26
PTPRF-207ENST00000436724 C3orf84H3BNL1 204 aa13.41□□□□□ -0.26
PTPRF-207ENST00000436724 HECTD4Q9Y4D8 3996 aa13.4□□□□□ -0.26
PTPRF-207ENST00000436724 HYDINQ4G0P3 5121 aa13.4□□□□□ -0.26
PTPRF-207ENST00000436724 HIST1H4AP62805 103 aaKnown RBP13.39□□□□□ -0.27
PTPRF-207ENST00000436724 TRBV7-6A0A0J9YX20 115 aa13.39□□□□□ -0.27
PTPRF-207ENST00000436724 PANO1I0J062 215 aa13.39□□□□□ -0.27
PTPRF-207ENST00000436724 LINC00528Q8N1L1 170 aa13.38□□□□□ -0.27
PTPRF-207ENST00000436724 ALMS1Q8TCU4 4167 aa13.38□□□□□ -0.27
PTPRF-207ENST00000436724 Q6ZQY7 126 aa13.37□□□□□ -0.27
PTPRF-207ENST00000436724 DNAH6Q9C0G6 4158 aa13.37□□□□□ -0.27
PTPRF-207ENST00000436724 DNAH17Q9UFH2 4485 aa13.37□□□□□ -0.27
PTPRF-207ENST00000436724 KRTAP4-16G5E9R7 235 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-207ENST00000436724 PRYO14603 147 aa13.34□□□□□ -0.27
PTPRF-207ENST00000436724 RTL8CO15255 209 aa13.34□□□□□ -0.27
PTPRF-207ENST00000436724 RBM3P98179 157 aaKnown RBP13.33□□□□□ -0.28
PTPRF-207ENST00000436724 TNP2Q05952 138 aa13.33□□□□□ -0.28
PTPRF-207ENST00000436724 SPRR1AP35321 89 aa13.32□□□□□ -0.28
PTPRF-207ENST00000436724 Q6ZQT0 140 aa13.32□□□□□ -0.28
PTPRF-207ENST00000436724 C3orf22Q8N5N4 141 aa13.32□□□□□ -0.28
PTPRF-207ENST00000436724 A0A087WVE0 104 aa13.31□□□□□ -0.28
PTPRF-207ENST00000436724 PHF5AQ7RTV0 110 aaKnown RBP13.31□□□□□ -0.28
PTPRF-207ENST00000436724 LAMTOR3Q9UHA4 124 aa13.31□□□□□ -0.28
PTPRF-207ENST00000436724 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.31□□□□□ -0.28
PTPRF-207ENST00000436724 FRAS1Q86XX4 4008 aa13.31□□□□□ -0.28
PTPRF-207ENST00000436724 LOC110117498A0A087WWA1 95 aa13.3□□□□□ -0.28
PTPRF-207ENST00000436724 DPH3Q96FX2 82 aa13.3□□□□□ -0.28
PTPRF-207ENST00000436724 ETDCA0A1B0GVM5 59 aa13.29□□□□□ -0.28
PTPRF-207ENST00000436724 UQCRQO14949 82 aa13.29□□□□□ -0.28
PTPRF-207ENST00000436724 Q6ZRX8 168 aa13.29□□□□□ -0.28
PTPRF-207ENST00000436724 KRTAP11-1Q8IUC1 163 aa13.29□□□□□ -0.28
PTPRF-207ENST00000436724 REG3GQ6UW15 175 aa13.28□□□□□ -0.28
PTPRF-207ENST00000436724 PKIGQ9Y2B9 76 aa13.28□□□□□ -0.28
PTPRF-207ENST00000436724 ATOX1O00244 68 aa13.28□□□□□ -0.28
PTPRF-207ENST00000436724 Q9BRP9 147 aa13.28□□□□□ -0.28
PTPRF-207ENST00000436724 LINC00474Q9P2X8 69 aa13.28□□□□□ -0.28
PTPRF-207ENST00000436724 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-207ENST00000436724 COX7CP15954 63 aa13.27□□□□□ -0.29
PTPRF-207ENST00000436724 H3BQ85 93 aa13.26□□□□□ -0.29
PTPRF-207ENST00000436724 SPACA4Q8TDM5 124 aa13.26□□□□□ -0.29
PTPRF-207ENST00000436724 IGLV5-52A0A0A0MRZ9 124 aa13.25□□□□□ -0.29
PTPRF-207ENST00000436724 C9orf153Q5TBE3 101 aa13.24□□□□□ -0.29
PTPRF-207ENST00000436724 UBE2BP63146 152 aa13.24□□□□□ -0.29
PTPRF-207ENST00000436724 ATP5EP2Q5VTU8 51 aa13.23□□□□□ -0.29
PTPRF-207ENST00000436724 UBL5Q9BZL1 73 aa13.23□□□□□ -0.29
PTPRF-207ENST00000436724 DSCR8Q96T75 97 aa13.22□□□□□ -0.29
PTPRF-207ENST00000436724 DNAH11Q96DT5 4516 aa13.21□□□□□ -0.29
PTPRF-207ENST00000436724 SACSQ9NZJ4 4579 aa13.21□□□□□ -0.29
PTPRF-207ENST00000436724 ERC2-IT1O76042 136 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 FAM19A1Q7Z5A9 133 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 DHRS4-AS1Q9P1J3 65 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 FAT2Q9NYQ8 4349 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 KRTAP10-2P60368 255 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 PRLHP81277 87 aa13.2□□□□□ -0.3
PTPRF-207ENST00000436724 DEFB105AQ8NG35 78 aa13.19□□□□□ -0.3
PTPRF-207ENST00000436724 PDE6GP18545 87 aa13.18□□□□□ -0.3
PTPRF-207ENST00000436724 DNAH5Q8TE73 4624 aa13.17□□□□□ -0.3
PTPRF-207ENST00000436724 ST20-AS1Q8NBB2 130 aa13.17□□□□□ -0.3
PTPRF-207ENST00000436724 TRBV7-4A0A0J9YYF1 115 aa13.17□□□□□ -0.3
PTPRF-207ENST00000436724 CRYGAP11844 174 aa13.16□□□□□ -0.3
PTPRF-207ENST00000436724 SRRM2Q9UQ35 2752 aaKnown RBP13.16□□□□□ -0.3
PTPRF-207ENST00000436724 SERP2Q8N6R1 65 aa13.15□□□□□ -0.3
PTPRF-207ENST00000436724 GHRHP01286 108 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms