RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 DIRC1Q969H9 104 aa14.35□□□□□ -0.11
CPSF4-204ENST00000436336 COX6CP09669 75 aa14.35□□□□□ -0.11
CPSF4-204ENST00000436336 REG3GQ6UW15 175 aa14.34□□□□□ -0.11
CPSF4-204ENST00000436336 KRTAP11-1Q8IUC1 163 aa14.34□□□□□ -0.11
CPSF4-204ENST00000436336 SPRR1AP35321 89 aa14.33□□□□□ -0.12
CPSF4-204ENST00000436336 A0A1W2PPM0 123 aa14.32□□□□□ -0.12
CPSF4-204ENST00000436336 HAMPP81172 84 aa14.32□□□□□ -0.12
CPSF4-204ENST00000436336 SCGB1C2P0DMR2 95 aa14.31□□□□□ -0.12
CPSF4-204ENST00000436336 VAMP3Q15836 100 aa14.31□□□□□ -0.12
CPSF4-204ENST00000436336 LYRM7Q5U5X0 104 aa14.31□□□□□ -0.12
CPSF4-204ENST00000436336 TRBV7-6A0A0J9YX20 115 aa14.3□□□□□ -0.12
CPSF4-204ENST00000436336 KRTAP4-16G5E9R7 235 aaPredicted RBP14.29□□□□□ -0.12
CPSF4-204ENST00000436336 H0YGX0 51 aa14.29□□□□□ -0.12
CPSF4-204ENST00000436336 FABP2P12104 132 aa14.29□□□□□ -0.12
CPSF4-204ENST00000436336 XGP55808 180 aa14.28□□□□□ -0.12
CPSF4-204ENST00000436336 ETDCA0A1B0GVM5 59 aa14.27□□□□□ -0.12
CPSF4-204ENST00000436336 COX7BP24311 80 aa14.27□□□□□ -0.13
CPSF4-204ENST00000436336 ELOF1P60002 83 aaKnown RBP14.27□□□□□ -0.13
CPSF4-204ENST00000436336 APOBP04114 4563 aaKnown RBP14.26□□□□□ -0.13
CPSF4-204ENST00000436336 PSORS1C2Q9UIG4 136 aa14.24□□□□□ -0.13
CPSF4-204ENST00000436336 B5MCH6 92 aa14.24□□□□□ -0.13
CPSF4-204ENST00000436336 CLEC2BQ92478 149 aa14.23□□□□□ -0.13
CPSF4-204ENST00000436336 BCE1O60756 84 aa14.22□□□□□ -0.13
CPSF4-204ENST00000436336 Q6ZRX8 168 aa14.22□□□□□ -0.13
CPSF4-204ENST00000436336 FAM19A1Q7Z5A9 133 aa14.22□□□□□ -0.13
CPSF4-204ENST00000436336 LINC00528Q8N1L1 170 aa14.22□□□□□ -0.13
CPSF4-204ENST00000436336 TRBV20-1A0A075B6N2 111 aa14.21□□□□□ -0.13
CPSF4-204ENST00000436336 TCL1BO95988 128 aa14.21□□□□□ -0.14
CPSF4-204ENST00000436336 SPCS1Q9Y6A9 102 aa14.21□□□□□ -0.14
CPSF4-204ENST00000436336 FAM218AQ96MZ4 157 aa14.2□□□□□ -0.14
CPSF4-204ENST00000436336 LINC00575Q6W349 94 aa14.19□□□□□ -0.14
CPSF4-204ENST00000436336 A0A1B0GV90 55 aa14.18□□□□□ -0.14
CPSF4-204ENST00000436336 C1orf137Q5JT78 98 aa14.18□□□□□ -0.14
CPSF4-204ENST00000436336 EPPK1P58107 5090 aaKnown RBP14.18□□□□□ -0.14
CPSF4-204ENST00000436336 LST1O00453 97 aa14.18□□□□□ -0.14
CPSF4-204ENST00000436336 ATXN8Q156A1 80 aa14.18□□□□□ -0.14
CPSF4-204ENST00000436336 A0A1B0GX51 115 aa14.17□□□□□ -0.14
CPSF4-204ENST00000436336 H0Y9J4 135 aa14.17□□□□□ -0.14
CPSF4-204ENST00000436336 SLC25A20O43772 301 aa14.16□□□□□ -0.14
CPSF4-204ENST00000436336 CDK2AP2O75956 126 aa14.16□□□□□ -0.14
CPSF4-204ENST00000436336 INAFM2P0DMQ5 153 aa14.16□□□□□ -0.14
CPSF4-204ENST00000436336 PRLHP81277 87 aa14.16□□□□□ -0.14
CPSF4-204ENST00000436336 UBE2AP49459 152 aa14.15□□□□□ -0.14
CPSF4-204ENST00000436336 K7EP34 96 aa14.15□□□□□ -0.14
CPSF4-204ENST00000436336 SNCGO76070 127 aa14.15□□□□□ -0.14
CPSF4-204ENST00000436336 DHRS4-AS1Q9P1J3 65 aa14.15□□□□□ -0.14
CPSF4-204ENST00000436336 hADV29S1A0JD25 119 aa14.14□□□□□ -0.15
CPSF4-204ENST00000436336 Q9BRP9 147 aa14.14□□□□□ -0.15
CPSF4-204ENST00000436336 TRACP01848 142 aa14.13□□□□□ -0.15
CPSF4-204ENST00000436336 KRTAP13-1Q8IUC0 172 aa14.13□□□□□ -0.15
CPSF4-204ENST00000436336 GTF2H5Q6ZYL4 71 aa14.12□□□□□ -0.15
CPSF4-204ENST00000436336 SMR3BP02814 79 aaPredicted RBP14.1□□□□□ -0.15
CPSF4-204ENST00000436336 IGLV7-43P04211 117 aa14.1□□□□□ -0.15
CPSF4-204ENST00000436336 SMCR5Q8TEV8 140 aa14.1□□□□□ -0.15
CPSF4-204ENST00000436336 H3BMG7 143 aa14.1□□□□□ -0.15
CPSF4-204ENST00000436336 DNAL4O96015 105 aa14.09□□□□□ -0.15
CPSF4-204ENST00000436336 HIGD2AQ9BW72 106 aa14.09□□□□□ -0.15
CPSF4-204ENST00000436336 ZNF861PO60384 105 aa14.07□□□□□ -0.16
CPSF4-204ENST00000436336 RPL37AP61513 92 aaKnown RBP14.07□□□□□ -0.16
CPSF4-204ENST00000436336 ERC2-IT1O76042 136 aa14.04□□□□□ -0.16
CPSF4-204ENST00000436336 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.04□□□□□ -0.16
CPSF4-204ENST00000436336 Q6ZQY7 126 aa14.04□□□□□ -0.16
CPSF4-204ENST00000436336 RYR1P21817 5038 aa14.01□□□□□ -0.17
CPSF4-204ENST00000436336 C9JAW5 83 aa14.01□□□□□ -0.17
CPSF4-204ENST00000436336 UBE2V1Q13404 147 aa14.01□□□□□ -0.17
CPSF4-204ENST00000436336 VPS13BQ7Z7G8 4022 aa14.01□□□□□ -0.17
CPSF4-204ENST00000436336 ORMDL1Q9P0S3 153 aa14□□□□□ -0.17
CPSF4-204ENST00000436336 OCIAD2Q56VL3 154 aa13.99□□□□□ -0.17
CPSF4-204ENST00000436336 HSPG2P98160 4391 aa13.99□□□□□ -0.17
CPSF4-204ENST00000436336 FAT1Q14517 4588 aa13.98□□□□□ -0.17
CPSF4-204ENST00000436336 GHRHP01286 108 aa13.97□□□□□ -0.17
CPSF4-204ENST00000436336 ST20-AS1Q8NBB2 130 aa13.97□□□□□ -0.17
CPSF4-204ENST00000436336 FAM229AH3BQW9 127 aa13.96□□□□□ -0.17
CPSF4-204ENST00000436336 MTURNQ8N3F0 131 aa13.95□□□□□ -0.18
CPSF4-204ENST00000436336 IGLV5-48A0A075B6I7 105 aa13.94□□□□□ -0.18
CPSF4-204ENST00000436336 H3BQ85 93 aa13.94□□□□□ -0.18
CPSF4-204ENST00000436336 BAALC-AS2P0C853 105 aa13.94□□□□□ -0.18
CPSF4-204ENST00000436336 KRTAP10-4P60372 401 aaPredicted RBP13.94□□□□□ -0.18
CPSF4-204ENST00000436336 PRO0461Q9UI25 63 aa13.94□□□□□ -0.18
CPSF4-204ENST00000436336 KIAA1109Q2LD37 5005 aa13.94□□□□□ -0.18
CPSF4-204ENST00000436336 H3BT86 120 aa13.93□□□□□ -0.18
CPSF4-204ENST00000436336 PLA2G1BP04054 148 aaKnown RBP13.93□□□□□ -0.18
CPSF4-204ENST00000436336 LINC01547P58512 204 aaPredicted RBP13.93□□□□□ -0.18
CPSF4-204ENST00000436336 DEFB105AQ8NG35 78 aa13.93□□□□□ -0.18
CPSF4-204ENST00000436336 F8W1H4 67 aa13.92□□□□□ -0.18
CPSF4-204ENST00000436336 TMEM256-PLSCR3K7ERE1 68 aa13.92□□□□□ -0.18
CPSF4-204ENST00000436336 PPDPFLQ8WWR9 84 aa13.92□□□□□ -0.18
CPSF4-204ENST00000436336 ZNF706Q9Y5V0 76 aaPredicted RBP13.92□□□□□ -0.18
CPSF4-204ENST00000436336 TEX49A0A1B0GTD5 131 aa13.9□□□□□ -0.18
CPSF4-204ENST00000436336 Q8N377 158 aa13.9□□□□□ -0.18
CPSF4-204ENST00000436336 ANKRD29Q8N6D5 301 aa13.9□□□□□ -0.18
CPSF4-204ENST00000436336 SPRR4Q96PI1 79 aa13.9□□□□□ -0.18
CPSF4-204ENST00000436336 SMCPP49901 116 aaPredicted RBP13.89□□□□□ -0.19
CPSF4-204ENST00000436336 SPINK6Q6UWN8 80 aa13.89□□□□□ -0.19
CPSF4-204ENST00000436336 Q5VSD8 79 aa13.88□□□□□ -0.19
CPSF4-204ENST00000436336 LINC01600Q96MT4 127 aa13.88□□□□□ -0.19
CPSF4-204ENST00000436336 SRRM2Q9UQ35 2752 aaKnown RBP13.88□□□□□ -0.19
CPSF4-204ENST00000436336 GAGE2AQ6NT46 116 aa13.87□□□□□ -0.19
CPSF4-204ENST00000436336 SPRR1BP22528 89 aa13.87□□□□□ -0.19
CPSF4-204ENST00000436336 Q8N1X5 172 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms