RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CXCL6P80162 114 aa7.71□□□□□ -1.18
CD44-209ENST00000433892 C7orf33Q8WU49 177 aa7.7□□□□□ -1.18
CD44-209ENST00000433892 BAHCC1Q9P281 2608 aa7.7□□□□□ -1.18
CD44-209ENST00000433892 TRAV10A0A0B4J240 114 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 F8WDY8 70 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 J3KT08 172 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 C20orf197Q8N268 126 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 DEFB105AQ8NG35 78 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 KCNQ1DNQ9H478 68 aa7.69□□□□□ -1.18
CD44-209ENST00000433892 COL6A5A8TX70 2615 aa7.68□□□□□ -1.18
CD44-209ENST00000433892 CASC10Q5T4H9 136 aa7.68□□□□□ -1.18
CD44-209ENST00000433892 FAM168BA1KXE4 195 aa7.67□□□□□ -1.18
CD44-209ENST00000433892 RPL37AP8A6NKH3 93 aa7.67□□□□□ -1.18
CD44-209ENST00000433892 PRB2P02812 416 aaPredicted RBP7.67□□□□□ -1.18
CD44-209ENST00000433892 DPH3Q96FX2 82 aa7.67□□□□□ -1.18
CD44-209ENST00000433892 LINC00588Q9Y4M8 146 aa7.67□□□□□ -1.18
CD44-209ENST00000433892 LYSTQ99698 3801 aa7.67□□□□□ -1.18
CD44-209ENST00000433892 HUWE1Q7Z6Z7 4374 aaKnown RBP7.66□□□□□ -1.18
CD44-209ENST00000433892 TRAV7A0A075B6U4 112 aa7.66□□□□□ -1.18
CD44-209ENST00000433892 RPS28P62857 69 aaKnown RBP7.66□□□□□ -1.18
CD44-209ENST00000433892 Q8N377 158 aa7.66□□□□□ -1.18
CD44-209ENST00000433892 BCE1O60756 84 aa7.64□□□□□ -1.19
CD44-209ENST00000433892 TLX1NBP0CAT3 122 aa7.64□□□□□ -1.19
CD44-209ENST00000433892 MRAPQ8TCY5 172 aa7.64□□□□□ -1.19
CD44-209ENST00000433892 DNAH10Q8IVF4 4471 aa7.64□□□□□ -1.19
CD44-209ENST00000433892 Q8N9L7 120 aa7.64□□□□□ -1.19
CD44-209ENST00000433892 C3orf84H3BNL1 204 aa7.63□□□□□ -1.19
CD44-209ENST00000433892 FAM19A5Q7Z5A7 132 aaPredicted RBP7.63□□□□□ -1.19
CD44-209ENST00000433892 Q9BRP9 147 aa7.63□□□□□ -1.19
CD44-209ENST00000433892 NREPQ16612 68 aa7.62□□□□□ -1.19
CD44-209ENST00000433892 Q6ZRX8 168 aa7.62□□□□□ -1.19
CD44-209ENST00000433892 PLA2G2DQ9UNK4 145 aa7.62□□□□□ -1.19
CD44-209ENST00000433892 IGLV1-50A0A075B6I6 118 aa7.62□□□□□ -1.19
CD44-209ENST00000433892 KRTAP7-1Q8IUC3 87 aa7.62□□□□□ -1.19
CD44-209ENST00000433892 KRTAP4-16G5E9R7 235 aaPredicted RBP7.61□□□□□ -1.19
CD44-209ENST00000433892 OXTP01178 125 aa7.61□□□□□ -1.19
CD44-209ENST00000433892 TM2D3Q9BRN9 247 aa7.61□□□□□ -1.19
CD44-209ENST00000433892 DHRS4-AS1Q9P1J3 65 aa7.61□□□□□ -1.19
CD44-209ENST00000433892 SNURFQ9Y675 71 aa7.61□□□□□ -1.19
CD44-209ENST00000433892 ETDCA0A1B0GVM5 59 aa7.61□□□□□ -1.19
CD44-209ENST00000433892 IGLV5-48A0A075B6I7 105 aa7.6□□□□□ -1.19
CD44-209ENST00000433892 ST20-AS1Q8NBB2 130 aa7.6□□□□□ -1.19
CD44-209ENST00000433892 IGLV5-37A0A075B6J1 123 aa7.59□□□□□ -1.19
CD44-209ENST00000433892 H7BZZ5 65 aa7.59□□□□□ -1.19
CD44-209ENST00000433892 PRYO14603 147 aa7.59□□□□□ -1.19
CD44-209ENST00000433892 MGAM2Q2M2H8 2515 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 COL7A1Q02388 2944 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 BPY2O14599 106 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 SPRR1AP35321 89 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 KLKP1Q107X0 134 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 RMI2Q96E14 147 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 IGKV4-1P06312 121 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 MRPL55Q7Z7F7 128 aaKnown RBP7.58□□□□□ -1.2
CD44-209ENST00000433892 STAB2Q8WWQ8 2551 aa7.58□□□□□ -1.2
CD44-209ENST00000433892 ERC2-IT1O76042 136 aa7.57□□□□□ -1.2
CD44-209ENST00000433892 DNAH9Q9NYC9 4486 aa7.56□□□□□ -1.2
CD44-209ENST00000433892 FAM236DA0A1B0GTK5 79 aa7.56□□□□□ -1.2
CD44-209ENST00000433892 FAM236CP0DP71 79 aa7.56□□□□□ -1.2
CD44-209ENST00000433892 A0A1W2PNM2 257 aa7.55□□□□□ -1.2
CD44-209ENST00000433892 FUSP35637 526 aaKnown RBP eCLIP7.55□□□□□ -1.2
CD44-209ENST00000433892 TENM2Q9NT68 2774 aa7.55□□□□□ -1.2
CD44-209ENST00000433892 K7EIL1 84 aa7.55□□□□□ -1.2
CD44-209ENST00000433892 UBE2BP63146 152 aa7.55□□□□□ -1.2
CD44-209ENST00000433892 C1orf137Q5JT78 98 aa7.55□□□□□ -1.2
CD44-209ENST00000433892 TNP2Q05952 138 aa7.54□□□□□ -1.2
CD44-209ENST00000433892 CSMD3Q7Z407 3707 aa7.54□□□□□ -1.2
CD44-209ENST00000433892 F8WEM9 126 aa7.53□□□□□ -1.2
CD44-209ENST00000433892 SRRM2Q9UQ35 2752 aaKnown RBP7.52□□□□□ -1.21
CD44-209ENST00000433892 REG3GQ6UW15 175 aa7.52□□□□□ -1.21
CD44-209ENST00000433892 Q8NBF4 154 aa7.51□□□□□ -1.21
CD44-209ENST00000433892 KRTAP1-5Q9BYS1 174 aa7.51□□□□□ -1.21
CD44-209ENST00000433892 IGKV2-24A0A0C4DH68 120 aa7.5□□□□□ -1.21
CD44-209ENST00000433892 TMEM254Q8TBM7 123 aa7.5□□□□□ -1.21
CD44-209ENST00000433892 DNAH7Q8WXX0 4024 aa7.5□□□□□ -1.21
CD44-209ENST00000433892 OCR1Q9BZK8 76 aa7.5□□□□□ -1.21
CD44-209ENST00000433892 A0A096LNI7 61 aa7.49□□□□□ -1.21
CD44-209ENST00000433892 A0A1B0GW54 56 aa7.49□□□□□ -1.21
CD44-209ENST00000433892 A0A0G2JQZ4 141 aa7.48□□□□□ -1.21
CD44-209ENST00000433892 A0A1W2PNN7 141 aa7.48□□□□□ -1.21
CD44-209ENST00000433892 Q5XG85 94 aa7.48□□□□□ -1.21
CD44-209ENST00000433892 SMIM29Q86T20 159 aa7.48□□□□□ -1.21
CD44-209ENST00000433892 SPRR4Q96PI1 79 aa7.48□□□□□ -1.21
CD44-209ENST00000433892 NDUFC1O43677 76 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 PRLHP81277 87 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 C4orf26Q17RF5 130 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 SERP1Q9Y6X1 66 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 EPM2AB3EWF7 344 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 PSCAO43653 123 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 LINC00476Q8WZB0 136 aa7.47□□□□□ -1.21
CD44-209ENST00000433892 C16orf90A8MZG2 172 aa7.46□□□□□ -1.22
CD44-209ENST00000433892 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.45□□□□□ -1.22
CD44-209ENST00000433892 C5orf47Q569G3 176 aa7.45□□□□□ -1.22
CD44-209ENST00000433892 DSCR10P59022 87 aa7.45□□□□□ -1.22
CD44-209ENST00000433892 FAM30AQ9NZY2 134 aa7.44□□□□□ -1.22
CD44-209ENST00000433892 K7EQZ3 153 aa7.44□□□□□ -1.22
CD44-209ENST00000433892 CNBPP62633 177 aaKnown RBP7.44□□□□□ -1.22
CD44-209ENST00000433892 HIGD2AQ9BW72 106 aa7.44□□□□□ -1.22
CD44-209ENST00000433892 A0A0U1RQV1 116 aa7.43□□□□□ -1.22
CD44-209ENST00000433892 IGFL1Q6UW32 110 aa7.43□□□□□ -1.22
CD44-209ENST00000433892 UBE2DNLQ8IWF7 75 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms