RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 HSPB8Q9UJY1 196 aa8.09□□□□□ -1.11
SDC1-204ENST00000429035 LOC107984156A0A0G2JMH3 177 aa8.08□□□□□ -1.12
SDC1-204ENST00000429035 IGLV6-57P01721 117 aa8.08□□□□□ -1.12
SDC1-204ENST00000429035 ARL17AQ8IVW1 177 aa8.08□□□□□ -1.12
SDC1-204ENST00000429035 ST20-AS1Q8NBB2 130 aa8.08□□□□□ -1.12
SDC1-204ENST00000429035 NDUFC2O95298 119 aa8.07□□□□□ -1.12
SDC1-204ENST00000429035 LINC00310P59036 64 aa8.07□□□□□ -1.12
SDC1-204ENST00000429035 ZNF73O43830 326 aaPredicted RBP8.06□□□□□ -1.12
SDC1-204ENST00000429035 SOSTDC1Q6X4U4 206 aa8.06□□□□□ -1.12
SDC1-204ENST00000429035 SLC7A5P1Q8MH63 180 aa8.06□□□□□ -1.12
SDC1-204ENST00000429035 HINT1P49773 126 aaPredicted RBP8.05□□□□□ -1.12
SDC1-204ENST00000429035 HRCT1Q6UXD1 115 aa8.05□□□□□ -1.12
SDC1-204ENST00000429035 A0A0J9YXY3 114 aa8.04□□□□□ -1.12
SDC1-204ENST00000429035 XP32Q5T750 250 aa8.04□□□□□ -1.12
SDC1-204ENST00000429035 OR13C6PQ8NH95 151 aa8.04□□□□□ -1.12
SDC1-204ENST00000429035 EIF4EBP3O60516 100 aaPredicted RBP8.03□□□□□ -1.12
SDC1-204ENST00000429035 ADAMTSL4-AS1Q5T5F5 129 aa8.02□□□□□ -1.13
SDC1-204ENST00000429035 LIMD2Q9BT23 127 aa8.01□□□□□ -1.13
SDC1-204ENST00000429035 CBY1Q9Y3M2 126 aa8.01□□□□□ -1.13
SDC1-204ENST00000429035 E9PLD3 99 aa8□□□□□ -1.13
SDC1-204ENST00000429035 C9orf92A6NGG3 77 aa7.99□□□□□ -1.13
SDC1-204ENST00000429035 SLC25A34Q6PIV7 304 aa7.98□□□□□ -1.13
SDC1-204ENST00000429035 SPANXCQ9NY87 97 aa7.98□□□□□ -1.13
SDC1-204ENST00000429035 LINC00308Q8TCZ7 52 aa7.97□□□□□ -1.13
SDC1-204ENST00000429035 LAMTOR3Q9UHA4 124 aa7.97□□□□□ -1.13
SDC1-204ENST00000429035 DHRS4-AS1Q9P1J3 65 aa7.96□□□□□ -1.14
SDC1-204ENST00000429035 C5orf52A6NGY3 159 aa7.95□□□□□ -1.14
SDC1-204ENST00000429035 Q1RN00 199 aa7.95□□□□□ -1.14
SDC1-204ENST00000429035 PCOTHQ58A44 107 aa7.95□□□□□ -1.14
SDC1-204ENST00000429035 DEFB105AQ8NG35 78 aa7.95□□□□□ -1.14
SDC1-204ENST00000429035 IGLV8-61A0A075B6I0 122 aa7.94□□□□□ -1.14
SDC1-204ENST00000429035 ZNF815PA8K554 130 aa7.94□□□□□ -1.14
SDC1-204ENST00000429035 COX7BP24311 80 aa7.94□□□□□ -1.14
SDC1-204ENST00000429035 SPANXDQ9BXN6 97 aa7.94□□□□□ -1.14
SDC1-204ENST00000429035 SYS1-DBNDD2H3BUS1 97 aa7.93□□□□□ -1.14
SDC1-204ENST00000429035 SPRR1BP22528 89 aa7.93□□□□□ -1.14
SDC1-204ENST00000429035 TAL2Q16559 108 aa7.93□□□□□ -1.14
SDC1-204ENST00000429035 C6orf99Q4VX62 202 aa7.93□□□□□ -1.14
SDC1-204ENST00000429035 LITAFQ99732 161 aa7.93□□□□□ -1.14
SDC1-204ENST00000429035 H7C2G1 150 aa7.92□□□□□ -1.14
SDC1-204ENST00000429035 TIMM17BO60830 172 aa7.92□□□□□ -1.14
SDC1-204ENST00000429035 TTTY13Q9BZ97 58 aa7.92□□□□□ -1.14
SDC1-204ENST00000429035 ELOF1P60002 83 aaKnown RBP7.91□□□□□ -1.14
SDC1-204ENST00000429035 LCE2DQ5TA82 110 aaPredicted RBP7.91□□□□□ -1.14
SDC1-204ENST00000429035 COLCA2A8K830 154 aa7.9□□□□□ -1.14
SDC1-204ENST00000429035 PRO1933Q9H354 126 aa7.89□□□□□ -1.15
SDC1-204ENST00000429035 LCE2CQ5TA81 110 aa7.88□□□□□ -1.15
SDC1-204ENST00000429035 LINC01545Q5VT33 79 aa7.88□□□□□ -1.15
SDC1-204ENST00000429035 LINC00518Q8N0U6 118 aa7.88□□□□□ -1.15
SDC1-204ENST00000429035 SCGB1D4Q6XE38 83 aa7.87□□□□□ -1.15
SDC1-204ENST00000429035 TEX49A0A1B0GTD5 131 aa7.86□□□□□ -1.15
SDC1-204ENST00000429035 S100A1P23297 94 aa7.86□□□□□ -1.15
SDC1-204ENST00000429035 PET117Q6UWS5 81 aa7.86□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BKO60814 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BJP06899 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BOP23527 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BBP33778 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BDP58876 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BCP62807 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 MT1HP80294 61 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 CD164Q04900 197 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST2H2BEQ16778 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BHQ93079 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BNQ99877 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 HIST1H2BMQ99879 126 aa7.85□□□□□ -1.15
SDC1-204ENST00000429035 A0A0G2JQZ4 141 aa7.84□□□□□ -1.15
SDC1-204ENST00000429035 A6NDN8 102 aa7.84□□□□□ -1.15
SDC1-204ENST00000429035 KRTAP19-2Q3LHN2 52 aa7.84□□□□□ -1.15
SDC1-204ENST00000429035 CRCT1Q9UGL9 99 aa7.84□□□□□ -1.15
SDC1-204ENST00000429035 A0A1B0GWB2 263 aa7.83□□□□□ -1.16
SDC1-204ENST00000429035 AKR1D1P51857 326 aa7.83□□□□□ -1.16
SDC1-204ENST00000429035 KRTDAPP60985 99 aa7.83□□□□□ -1.16
SDC1-204ENST00000429035 C3orf79P0CE67 100 aa7.82□□□□□ -1.16
SDC1-204ENST00000429035 CFC1BP0CG36 223 aa7.82□□□□□ -1.16
SDC1-204ENST00000429035 FSIP2Q5CZC0 6907 aa7.82□□□□□ -1.16
SDC1-204ENST00000429035 SMIM29Q86T20 159 aa7.81□□□□□ -1.16
SDC1-204ENST00000429035 COPS9Q8WXC6 57 aa7.81□□□□□ -1.16
SDC1-204ENST00000429035 C1orf195Q5TG92 126 aa7.8□□□□□ -1.16
SDC1-204ENST00000429035 TRBV7-6A0A0J9YX20 115 aa7.79□□□□□ -1.16
SDC1-204ENST00000429035 C20orf202A1L168 122 aa7.79□□□□□ -1.16
SDC1-204ENST00000429035 M0R2T5 61 aa7.79□□□□□ -1.16
SDC1-204ENST00000429035 COX6B2Q6YFQ2 88 aa7.79□□□□□ -1.16
SDC1-204ENST00000429035 ANKRD39Q53RE8 183 aa7.78□□□□□ -1.16
SDC1-204ENST00000429035 ATOH7Q8N100 152 aa7.78□□□□□ -1.16
SDC1-204ENST00000429035 IGLV5-48A0A075B6I7 105 aa7.77□□□□□ -1.17
SDC1-204ENST00000429035 IFITM1P13164 125 aa7.77□□□□□ -1.17
SDC1-204ENST00000429035 RPL37P61927 97 aaKnown RBP7.77□□□□□ -1.17
SDC1-204ENST00000429035 Q5XG85 94 aa7.77□□□□□ -1.17
SDC1-204ENST00000429035 MUSTN1Q8IVN3 82 aa7.77□□□□□ -1.17
SDC1-204ENST00000429035 NHP2Q9NX24 153 aaKnown RBP7.77□□□□□ -1.17
SDC1-204ENST00000429035 F8WEM9 126 aa7.76□□□□□ -1.17
SDC1-204ENST00000429035 TCL1BO95988 128 aa7.75□□□□□ -1.17
SDC1-204ENST00000429035 A4D1N5 150 aa7.74□□□□□ -1.17
SDC1-204ENST00000429035 KRTAP10-6P60371 365 aaPredicted RBP7.74□□□□□ -1.17
SDC1-204ENST00000429035 COA6Q5JTJ3 125 aaKnown RBP7.74□□□□□ -1.17
SDC1-204ENST00000429035 PCP2Q8IVA1 136 aa7.74□□□□□ -1.17
SDC1-204ENST00000429035 SMIM11BQ8TCY0 68 aa7.74□□□□□ -1.17
SDC1-204ENST00000429035 TRAV13-2A0A0B4J235 113 aa7.73□□□□□ -1.17
SDC1-204ENST00000429035 Q6ZVH6 145 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 222.5 ms