RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 C4orf48Q5BLP8 95 aa4.54□□□□□ -1.68
VIM-202ENST00000421459 TMEM170BQ5T4T1 132 aa4.54□□□□□ -1.68
VIM-202ENST00000421459 FP248Q71RG6 208 aaPredicted RBP4.54□□□□□ -1.68
VIM-202ENST00000421459 CRCT1Q9UGL9 99 aa4.54□□□□□ -1.68
VIM-202ENST00000421459 NCR3O14931 201 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 DLEU1O43261 78 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 COX8AP10176 69 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 HERVK_113P61574 105 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 CTAG1AP78358 180 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 COX17Q14061 63 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 SMCR5Q8TEV8 140 aa4.53□□□□□ -1.68
VIM-202ENST00000421459 TSTD3H0UI37 97 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 LEPROTO15243 131 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 LCE2CQ5TA81 110 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 BOD1L2Q8IYS8 172 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 MIEN1Q9BRT3 115 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 PRO1933Q9H354 126 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 UQCR10Q9UDW1 63 aa4.52□□□□□ -1.69
VIM-202ENST00000421459 IGLV9-49A0A0B4J1Y8 123 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 J3QQQ9 107 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 ERC2-IT1O76042 136 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 SMIM13P0DJ93 91 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 TSPEAR-AS2P59090 65 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 SLC25A34Q6PIV7 304 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 PCP2Q8IVA1 136 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 C14orf144Q96I85 54 aa4.51□□□□□ -1.69
VIM-202ENST00000421459 KRTAP4-16G5E9R7 235 aaPredicted RBP4.5□□□□□ -1.69
VIM-202ENST00000421459 NMUP48645 174 aa4.5□□□□□ -1.69
VIM-202ENST00000421459 GAGE2AQ6NT46 116 aa4.5□□□□□ -1.69
VIM-202ENST00000421459 ZNF706Q9Y5V0 76 aaPredicted RBP4.5□□□□□ -1.69
VIM-202ENST00000421459 MYMXA0A1B0GTQ4 84 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 SPINK1P00995 79 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 DDTP30046 118 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 SPRR1AP35321 89 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 SEC61BP60468 96 aaKnown RBP4.49□□□□□ -1.69
VIM-202ENST00000421459 MOBPQ13875 183 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 C2orf91Q6ZV80 131 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 Q8N377 158 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 TTTY13Q9BZ97 58 aa4.49□□□□□ -1.69
VIM-202ENST00000421459 TRBV10-3A0A0K0K1G6 114 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 ETDCA0A1B0GVM5 59 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 ZNF815PA8K554 130 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 PRYO14603 147 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 LGALS3P17931 250 aaKnown RBP4.48□□□□□ -1.69
VIM-202ENST00000421459 KRTAP19-2Q3LHN2 52 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 LINC00483Q53H64 154 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 MIR7-3HGQ8N6C7 128 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 KCNQ1DNQ9H478 68 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 HIGD1BQ9P298 99 aa4.48□□□□□ -1.69
VIM-202ENST00000421459 B5MCH6 92 aa4.47□□□□□ -1.69
VIM-202ENST00000421459 XP32Q5T750 250 aa4.47□□□□□ -1.69
VIM-202ENST00000421459 SFTA2Q6UW10 78 aa4.47□□□□□ -1.69
VIM-202ENST00000421459 Q9BRP9 147 aa4.47□□□□□ -1.69
VIM-202ENST00000421459 NDUFA12Q9UI09 145 aa4.47□□□□□ -1.69
VIM-202ENST00000421459 MEIG1Q5JSS6 88 aa4.46□□□□□ -1.7
VIM-202ENST00000421459 A0A0J9YXY3 114 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 PCP4L1A6NKN8 68 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 LINC00587B1AMM8 73 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 TIMM17BO60830 172 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 HERV-K104P63124 156 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 MT1HP80294 61 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 LITAFQ99732 161 aa4.45□□□□□ -1.7
VIM-202ENST00000421459 SPANXB1Q9NS25 103 aaPredicted RBP4.45□□□□□ -1.7
VIM-202ENST00000421459 SLC25A20O43772 301 aa4.44□□□□□ -1.7
VIM-202ENST00000421459 TAL2Q16559 108 aa4.44□□□□□ -1.7
VIM-202ENST00000421459 SCGB1D4Q6XE38 83 aa4.44□□□□□ -1.7
VIM-202ENST00000421459 SSBP3-AS1Q7Z2R9 100 aa4.44□□□□□ -1.7
VIM-202ENST00000421459 ST20-AS1Q8NBB2 130 aa4.44□□□□□ -1.7
VIM-202ENST00000421459 C9orf92A6NGG3 77 aa4.43□□□□□ -1.7
VIM-202ENST00000421459 HSD52Q0P140 79 aa4.43□□□□□ -1.7
VIM-202ENST00000421459 PCOTHQ58A44 107 aa4.43□□□□□ -1.7
VIM-202ENST00000421459 Q6ZVH6 145 aa4.43□□□□□ -1.7
VIM-202ENST00000421459 RPS29P62273 56 aaKnown RBP4.42□□□□□ -1.7
VIM-202ENST00000421459 ADAMTSL4-AS1Q5T5F5 129 aa4.42□□□□□ -1.7
VIM-202ENST00000421459 C9orf153Q5TBE3 101 aa4.42□□□□□ -1.7
VIM-202ENST00000421459 HRCT1Q6UXD1 115 aa4.42□□□□□ -1.7
VIM-202ENST00000421459 SPANXDQ9BXN6 97 aa4.42□□□□□ -1.7
VIM-202ENST00000421459 SPANXCQ9NY87 97 aa4.42□□□□□ -1.7
VIM-202ENST00000421459 IGLV8-61A0A075B6I0 122 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 M0R143 59 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 EIF4EBP3O60516 100 aaPredicted RBP4.41□□□□□ -1.7
VIM-202ENST00000421459 BVES-AS1Q5T3Y7 98 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 Q6ZRX8 168 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 CEND1Q8N111 149 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 SNHG12Q9BXW3 62 aa4.41□□□□□ -1.7
VIM-202ENST00000421459 FLGP20930 4061 aaPredicted RBP4.41□□□□□ -1.7
VIM-202ENST00000421459 LOC107984156A0A0G2JMH3 177 aa4.4□□□□□ -1.71
VIM-202ENST00000421459 IFITM1P13164 125 aa4.4□□□□□ -1.71
VIM-202ENST00000421459 NPC2P61916 151 aa4.4□□□□□ -1.71
VIM-202ENST00000421459 ARL17AQ8IVW1 177 aa4.4□□□□□ -1.71
VIM-202ENST00000421459 HIST1H4GQ99525 98 aa4.4□□□□□ -1.71
VIM-202ENST00000421459 A0A1B0GWB2 263 aa4.39□□□□□ -1.71
VIM-202ENST00000421459 LORP23490 312 aaPredicted RBP4.39□□□□□ -1.71
VIM-202ENST00000421459 HINT1P49773 126 aaPredicted RBP4.39□□□□□ -1.71
VIM-202ENST00000421459 FXYD2P54710 66 aa4.39□□□□□ -1.71
VIM-202ENST00000421459 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
VIM-202ENST00000421459 SOSTDC1Q6X4U4 206 aa4.39□□□□□ -1.71
VIM-202ENST00000421459 TRBV10-2A0A0K0K1G8 114 aa4.38□□□□□ -1.71
VIM-202ENST00000421459 IGLV6-57P01721 117 aa4.38□□□□□ -1.71
VIM-202ENST00000421459 S100A7L2Q5SY68 101 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms