RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ZNF861PO60384 105 aa11.39□□□□□ -0.59
PHRF1-202ENST00000413872 SPAG11AQ6PDA7 123 aa11.38□□□□□ -0.59
PHRF1-202ENST00000413872 FLNAP21333 2647 aaKnown RBP11.37□□□□□ -0.59
PHRF1-202ENST00000413872 A8MWP4 228 aa11.36□□□□□ -0.59
PHRF1-202ENST00000413872 PSPHP1O15172 72 aa11.36□□□□□ -0.59
PHRF1-202ENST00000413872 ATP11AUNQ6ZP68 121 aa11.36□□□□□ -0.59
PHRF1-202ENST00000413872 CNBPP62633 177 aaKnown RBP11.33□□□□□ -0.59
PHRF1-202ENST00000413872 Q96NJ1 140 aa11.33□□□□□ -0.6
PHRF1-202ENST00000413872 C9orf129Q5T035 196 aaKnown RBP11.33□□□□□ -0.6
PHRF1-202ENST00000413872 ZNF575Q86XF7 245 aa11.32□□□□□ -0.6
PHRF1-202ENST00000413872 LOC101927531A0A1B0GV80 90 aa11.32□□□□□ -0.6
PHRF1-202ENST00000413872 PCNTO95613 3336 aa11.31□□□□□ -0.6
PHRF1-202ENST00000413872 C1orf195Q5TG92 126 aa11.31□□□□□ -0.6
PHRF1-202ENST00000413872 ITPR3Q14573 2671 aa11.31□□□□□ -0.6
PHRF1-202ENST00000413872 LINC00304Q8N9R0 145 aa11.3□□□□□ -0.6
PHRF1-202ENST00000413872 BPTFQ12830 3046 aa11.3□□□□□ -0.6
PHRF1-202ENST00000413872 MRPL34Q9BQ48 92 aaKnown RBP11.29□□□□□ -0.6
PHRF1-202ENST00000413872 WIPF1O43516 503 aa11.29□□□□□ -0.6
PHRF1-202ENST00000413872 PMAIP1Q13794 54 aa11.27□□□□□ -0.6
PHRF1-202ENST00000413872 A0A1B0GU69 56 aa11.27□□□□□ -0.61
PHRF1-202ENST00000413872 IGFL1Q6UW32 110 aa11.27□□□□□ -0.61
PHRF1-202ENST00000413872 MAST4O15021 2626 aa11.25□□□□□ -0.61
PHRF1-202ENST00000413872 IGLV7-43P04211 117 aa11.24□□□□□ -0.61
PHRF1-202ENST00000413872 ATRQ13535 2644 aa11.24□□□□□ -0.61
PHRF1-202ENST00000413872 EIF4EBP3O60516 100 aaPredicted RBP11.23□□□□□ -0.61
PHRF1-202ENST00000413872 Q8N377 158 aa11.22□□□□□ -0.61
PHRF1-202ENST00000413872 K7EQZ3 153 aa11.21□□□□□ -0.61
PHRF1-202ENST00000413872 CHD7Q9P2D1 2997 aa11.21□□□□□ -0.62
PHRF1-202ENST00000413872 ERC2-IT1O76042 136 aa11.2□□□□□ -0.62
PHRF1-202ENST00000413872 CFAP46Q8IYW2 2715 aa11.19□□□□□ -0.62
PHRF1-202ENST00000413872 PSORS1C2Q9UIG4 136 aa11.19□□□□□ -0.62
PHRF1-202ENST00000413872 C5orf42Q9H799 3197 aa11.19□□□□□ -0.62
PHRF1-202ENST00000413872 PRR15Q8IV56 129 aa11.19□□□□□ -0.62
PHRF1-202ENST00000413872 A0A1W2PNN7 141 aa11.18□□□□□ -0.62
PHRF1-202ENST00000413872 IGLV5-37A0A075B6J1 123 aa11.18□□□□□ -0.62
PHRF1-202ENST00000413872 C8orf17Q9NRJ1 99 aa11.18□□□□□ -0.62
PHRF1-202ENST00000413872 CASC10Q5T4H9 136 aa11.17□□□□□ -0.62
PHRF1-202ENST00000413872 A0A1B0GVX0 72 aa11.16□□□□□ -0.62
PHRF1-202ENST00000413872 SMR3BP02814 79 aaPredicted RBP11.16□□□□□ -0.62
PHRF1-202ENST00000413872 SPRR4Q96PI1 79 aa11.16□□□□□ -0.62
PHRF1-202ENST00000413872 RPS28P62857 69 aaKnown RBP11.11□□□□□ -0.63
PHRF1-202ENST00000413872 DSCR10P59022 87 aa11.11□□□□□ -0.63
PHRF1-202ENST00000413872 CENPEQ02224 2701 aa11.1□□□□□ -0.63
PHRF1-202ENST00000413872 COX6B2Q6YFQ2 88 aa11.08□□□□□ -0.64
PHRF1-202ENST00000413872 OBSCN-AS1Q96MR7 158 aa11.07□□□□□ -0.64
PHRF1-202ENST00000413872 TNP2Q05952 138 aa11.05□□□□□ -0.64
PHRF1-202ENST00000413872 RANBP2P49792 3224 aaKnown RBP11.04□□□□□ -0.64
PHRF1-202ENST00000413872 CHD9Q3L8U1 2897 aa11.03□□□□□ -0.64
PHRF1-202ENST00000413872 ANAPC11Q9NYG5 84 aa11.02□□□□□ -0.64
PHRF1-202ENST00000413872 C4orf26Q17RF5 130 aa11.02□□□□□ -0.65
PHRF1-202ENST00000413872 CR1P17927 2039 aa11.01□□□□□ -0.65
PHRF1-202ENST00000413872 IGLV5-48A0A075B6I7 105 aa11□□□□□ -0.65
PHRF1-202ENST00000413872 C9orf92A6NGG3 77 aa11□□□□□ -0.65
PHRF1-202ENST00000413872 ZNF292O60281 2723 aa10.99□□□□□ -0.65
PHRF1-202ENST00000413872 A0A1W2PNM2 257 aa10.99□□□□□ -0.65
PHRF1-202ENST00000413872 CD164Q04900 197 aa10.98□□□□□ -0.65
PHRF1-202ENST00000413872 A0A0G2JQZ4 141 aa10.96□□□□□ -0.66
PHRF1-202ENST00000413872 COA5Q86WW8 74 aa10.96□□□□□ -0.66
PHRF1-202ENST00000413872 PRO0628Q9UI54 55 aa10.95□□□□□ -0.66
PHRF1-202ENST00000413872 KLKP1Q107X0 134 aa10.93□□□□□ -0.66
PHRF1-202ENST00000413872 RBM12B-AS1Q9P1G2 102 aa10.93□□□□□ -0.66
PHRF1-202ENST00000413872 CFAP54Q96N23 3096 aa10.92□□□□□ -0.66
PHRF1-202ENST00000413872 HTTP42858 3142 aa10.92□□□□□ -0.66
PHRF1-202ENST00000413872 FAM229BQ4G0N7 80 aa10.9□□□□□ -0.66
PHRF1-202ENST00000413872 LINC01600Q96MT4 127 aa10.9□□□□□ -0.66
PHRF1-202ENST00000413872 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.89□□□□□ -0.67
PHRF1-202ENST00000413872 IGLV8-61A0A075B6I0 122 aa10.89□□□□□ -0.67
PHRF1-202ENST00000413872 AKAP13Q12802 2813 aa10.88□□□□□ -0.67
PHRF1-202ENST00000413872 CYP4F30PQ9H0H9 118 aa10.88□□□□□ -0.67
PHRF1-202ENST00000413872 PLAC8Q9NZF1 115 aa10.87□□□□□ -0.67
PHRF1-202ENST00000413872 FAM104AQ969W3 186 aa10.87□□□□□ -0.67
PHRF1-202ENST00000413872 UQCR11O14957 56 aa10.86□□□□□ -0.67
PHRF1-202ENST00000413872 STAB1Q9NY15 2570 aa10.86□□□□□ -0.67
PHRF1-202ENST00000413872 LAMA3Q16787 3333 aa10.84□□□□□ -0.67
PHRF1-202ENST00000413872 TRANK1O15050 2925 aa10.83□□□□□ -0.68
PHRF1-202ENST00000413872 A0A0C4DFX4 3053 aa10.82□□□□□ -0.68
PHRF1-202ENST00000413872 MGAQ8IWI9 3026 aa10.82□□□□□ -0.68
PHRF1-202ENST00000413872 TEP1Q99973 2627 aaKnown RBP10.8□□□□□ -0.68
PHRF1-202ENST00000413872 MKI67P46013 3256 aaKnown RBP10.8□□□□□ -0.68
PHRF1-202ENST00000413872 SPANXA2-OT1Q8N9U9 137 aa10.78□□□□□ -0.68
PHRF1-202ENST00000413872 A8MUN3 132 aa10.77□□□□□ -0.68
PHRF1-202ENST00000413872 LAMA2P24043 3122 aaKnown RBP10.77□□□□□ -0.69
PHRF1-202ENST00000413872 PRR26Q8N8Z3 221 aa10.77□□□□□ -0.69
PHRF1-202ENST00000413872 IGLV7-46A0A075B6I9 117 aa10.76□□□□□ -0.69
PHRF1-202ENST00000413872 CHD6Q8TD26 2715 aa10.76□□□□□ -0.69
PHRF1-202ENST00000413872 SPRR1AP35321 89 aa10.76□□□□□ -0.69
PHRF1-202ENST00000413872 UNC79Q9P2D8 2635 aa10.75□□□□□ -0.69
PHRF1-202ENST00000413872 SETXQ7Z333 2677 aaKnown RBP10.75□□□□□ -0.69
PHRF1-202ENST00000413872 TEX15Q9BXT5 2789 aa10.74□□□□□ -0.69
PHRF1-202ENST00000413872 COL6A5A8TX70 2615 aa10.74□□□□□ -0.69
PHRF1-202ENST00000413872 BRCA2P51587 3418 aa10.73□□□□□ -0.69
PHRF1-202ENST00000413872 Q6ZSA8 131 aa10.73□□□□□ -0.69
PHRF1-202ENST00000413872 H7BZZ5 65 aa10.72□□□□□ -0.69
PHRF1-202ENST00000413872 WDFY4Q6ZS81 3184 aa10.7□□□□□ -0.7
PHRF1-202ENST00000413872 LCE6AA0A183 80 aa10.69□□□□□ -0.7
PHRF1-202ENST00000413872 MIR22HGQ0VDD5 57 aa10.69□□□□□ -0.7
PHRF1-202ENST00000413872 SPRR1BP22528 89 aa10.68□□□□□ -0.7
PHRF1-202ENST00000413872 PRUNE2Q8WUY3 3088 aa10.64□□□□□ -0.71
PHRF1-202ENST00000413872 IGSF10Q6WRI0 2623 aa10.64□□□□□ -0.71
PHRF1-202ENST00000413872 Q8N1X5 172 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms