RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 Q6ZQT0 140 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 OBSCN-AS1Q96MR7 158 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 PPDPFQ9H3Y8 114 aa8.76□□□□□ -1.01
VPS54-203ENST00000409558 TRAV10A0A0B4J240 114 aa8.76□□□□□ -1.01
VPS54-203ENST00000409558 LOC107984640A0A0U1RRK4 108 aa8.76□□□□□ -1.01
VPS54-203ENST00000409558 MUC7Q8TAX7 377 aa8.76□□□□□ -1.01
VPS54-203ENST00000409558 Q6ZVQ6 151 aa8.75□□□□□ -1.01
VPS54-203ENST00000409558 C20orf197Q8N268 126 aa8.75□□□□□ -1.01
VPS54-203ENST00000409558 ATOX1O00244 68 aa8.75□□□□□ -1.01
VPS54-203ENST00000409558 ETDCA0A1B0GVM5 59 aa8.74□□□□□ -1.01
VPS54-203ENST00000409558 A0A096LNI7 61 aa8.74□□□□□ -1.01
VPS54-203ENST00000409558 UQCRQO14949 82 aa8.74□□□□□ -1.01
VPS54-203ENST00000409558 WIPF1O43516 503 aa8.74□□□□□ -1.01
VPS54-203ENST00000409558 COX7CP15954 63 aa8.74□□□□□ -1.01
VPS54-203ENST00000409558 ELOF1P60002 83 aaKnown RBP8.73□□□□□ -1.01
VPS54-203ENST00000409558 LINC01547P58512 204 aaPredicted RBP8.73□□□□□ -1.01
VPS54-203ENST00000409558 SNURFQ9Y675 71 aa8.73□□□□□ -1.01
VPS54-203ENST00000409558 GVQW2A0A096LPI5 108 aaPredicted RBP8.72□□□□□ -1.01
VPS54-203ENST00000409558 LINC00167Q96N53 147 aa8.72□□□□□ -1.01
VPS54-203ENST00000409558 HIGD2AQ9BW72 106 aa8.72□□□□□ -1.01
VPS54-203ENST00000409558 CHTF8P0CG12 524 aa8.71□□□□□ -1.01
VPS54-203ENST00000409558 DEFB116Q30KQ4 102 aa8.71□□□□□ -1.02
VPS54-203ENST00000409558 PRLHP81277 87 aa8.71□□□□□ -1.02
VPS54-203ENST00000409558 C2orf48Q96LS8 159 aa8.69□□□□□ -1.02
VPS54-203ENST00000409558 H3BNG1 76 aa8.69□□□□□ -1.02
VPS54-203ENST00000409558 BPY2O14599 106 aa8.69□□□□□ -1.02
VPS54-203ENST00000409558 LINC00528Q8N1L1 170 aa8.69□□□□□ -1.02
VPS54-203ENST00000409558 ERC2-IT1O76042 136 aa8.68□□□□□ -1.02
VPS54-203ENST00000409558 KRTAP1-5Q9BYS1 174 aa8.68□□□□□ -1.02
VPS54-203ENST00000409558 DNAH10OSP0CZ25 163 aa8.68□□□□□ -1.02
VPS54-203ENST00000409558 SERP2Q8N6R1 65 aa8.68□□□□□ -1.02
VPS54-203ENST00000409558 NREPQ16612 68 aa8.67□□□□□ -1.02
VPS54-203ENST00000409558 DNAH10Q8IVF4 4471 aa8.67□□□□□ -1.02
VPS54-203ENST00000409558 MDFIQ99750 246 aa8.66□□□□□ -1.02
VPS54-203ENST00000409558 TGP01266 2768 aa8.65□□□□□ -1.02
VPS54-203ENST00000409558 Q8N377 158 aa8.64□□□□□ -1.03
VPS54-203ENST00000409558 Q9BRP9 147 aa8.63□□□□□ -1.03
VPS54-203ENST00000409558 MRPL55Q7Z7F7 128 aaKnown RBP8.63□□□□□ -1.03
VPS54-203ENST00000409558 KRTAP7-1Q8IUC3 87 aa8.61□□□□□ -1.03
VPS54-203ENST00000409558 TM2D3Q9BRN9 247 aa8.61□□□□□ -1.03
VPS54-203ENST00000409558 RMI2Q96E14 147 aa8.61□□□□□ -1.03
VPS54-203ENST00000409558 LOC110117498A0A087WWA1 95 aa8.6□□□□□ -1.03
VPS54-203ENST00000409558 TRBV7-4A0A0J9YYF1 115 aa8.6□□□□□ -1.03
VPS54-203ENST00000409558 HUWE1Q7Z6Z7 4374 aaKnown RBP8.59□□□□□ -1.03
VPS54-203ENST00000409558 CMYA5Q8N3K9 4069 aa8.59□□□□□ -1.03
VPS54-203ENST00000409558 C1orf137Q5JT78 98 aa8.59□□□□□ -1.03
VPS54-203ENST00000409558 PHF5AQ7RTV0 110 aaKnown RBP8.59□□□□□ -1.03
VPS54-203ENST00000409558 Q6ZRX8 168 aa8.59□□□□□ -1.03
VPS54-203ENST00000409558 KCNQ1DNQ9H478 68 aa8.58□□□□□ -1.04
VPS54-203ENST00000409558 IGLV1-50A0A075B6I6 118 aa8.58□□□□□ -1.04
VPS54-203ENST00000409558 ATP5EP2Q5VTU8 51 aa8.56□□□□□ -1.04
VPS54-203ENST00000409558 REG3GQ6UW15 175 aa8.56□□□□□ -1.04
VPS54-203ENST00000409558 FAM30AQ9NZY2 134 aa8.56□□□□□ -1.04
VPS54-203ENST00000409558 CRYGAP11844 174 aa8.55□□□□□ -1.04
VPS54-203ENST00000409558 PDE6GP18545 87 aa8.55□□□□□ -1.04
VPS54-203ENST00000409558 F8WEM9 126 aa8.54□□□□□ -1.04
VPS54-203ENST00000409558 A0A1W2PNM2 257 aa8.53□□□□□ -1.04
VPS54-203ENST00000409558 DHRS4-AS1Q9P1J3 65 aa8.52□□□□□ -1.05
VPS54-203ENST00000409558 HRCT1Q6UXD1 115 aa8.51□□□□□ -1.05
VPS54-203ENST00000409558 KRTAP11-1Q8IUC1 163 aa8.51□□□□□ -1.05
VPS54-203ENST00000409558 WFDC13Q8IUB5 93 aa8.5□□□□□ -1.05
VPS54-203ENST00000409558 A0A087WSZ3 146 aa8.5□□□□□ -1.05
VPS54-203ENST00000409558 UBE2AP49459 152 aa8.5□□□□□ -1.05
VPS54-203ENST00000409558 RPL37AP61513 92 aaKnown RBP8.5□□□□□ -1.05
VPS54-203ENST00000409558 PRR4Q16378 134 aa8.5□□□□□ -1.05
VPS54-203ENST00000409558 TRBV7-6A0A0J9YX20 115 aa8.49□□□□□ -1.05
VPS54-203ENST00000409558 LINC00476Q8WZB0 136 aa8.49□□□□□ -1.05
VPS54-203ENST00000409558 PANO1I0J062 215 aa8.48□□□□□ -1.05
VPS54-203ENST00000409558 PRYO14603 147 aa8.48□□□□□ -1.05
VPS54-203ENST00000409558 SMIM29Q86T20 159 aa8.48□□□□□ -1.05
VPS54-203ENST00000409558 J3KT08 172 aa8.48□□□□□ -1.05
VPS54-203ENST00000409558 CXCL6P80162 114 aa8.47□□□□□ -1.05
VPS54-203ENST00000409558 TRAV7A0A075B6U4 112 aa8.46□□□□□ -1.05
VPS54-203ENST00000409558 DNAH9Q9NYC9 4486 aa8.46□□□□□ -1.05
VPS54-203ENST00000409558 DNAH7Q8WXX0 4024 aa8.46□□□□□ -1.06
VPS54-203ENST00000409558 IGKV4-1P06312 121 aa8.46□□□□□ -1.06
VPS54-203ENST00000409558 IGLV9-49A0A0B4J1Y8 123 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 K7EQZ3 153 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 TLX1NBP0CAT3 122 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 H3BQ85 93 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 OXTP01178 125 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 APLNQ9ULZ1 77 aa8.45□□□□□ -1.06
VPS54-203ENST00000409558 EPM2AB3EWF7 344 aa8.44□□□□□ -1.06
VPS54-203ENST00000409558 ANAPC11Q9NYG5 84 aa8.44□□□□□ -1.06
VPS54-203ENST00000409558 LRCOL1A6NCL2 159 aa8.44□□□□□ -1.06
VPS54-203ENST00000409558 KRTAP4-16G5E9R7 235 aaPredicted RBP8.44□□□□□ -1.06
VPS54-203ENST00000409558 TMEM258P61165 79 aa8.44□□□□□ -1.06
VPS54-203ENST00000409558 C16orf90A8MZG2 172 aa8.43□□□□□ -1.06
VPS54-203ENST00000409558 FAM236DA0A1B0GTK5 79 aa8.43□□□□□ -1.06
VPS54-203ENST00000409558 FAM236CP0DP71 79 aa8.43□□□□□ -1.06
VPS54-203ENST00000409558 Q8NBF4 154 aa8.42□□□□□ -1.06
VPS54-203ENST00000409558 IGFL1Q6UW32 110 aa8.42□□□□□ -1.06
VPS54-203ENST00000409558 TMEM254Q8TBM7 123 aa8.4□□□□□ -1.06
VPS54-203ENST00000409558 IGLV5-48A0A075B6I7 105 aa8.4□□□□□ -1.06
VPS54-203ENST00000409558 C4orf26Q17RF5 130 aa8.4□□□□□ -1.06
VPS54-203ENST00000409558 NBDYA0A0U1RRE5 68 aa8.4□□□□□ -1.07
VPS54-203ENST00000409558 H7BZZ5 65 aa8.4□□□□□ -1.07
VPS54-203ENST00000409558 SPRR1AP35321 89 aa8.39□□□□□ -1.07
VPS54-203ENST00000409558 PLECQ15149 4684 aaKnown RBP8.39□□□□□ -1.07
VPS54-203ENST00000409558 F8WDY8 70 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms