RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 MUSTN1Q8IVN3 82 aa9.48□□□□□ -0.89
CUX2-202ENST00000397643 HIST1H4GQ99525 98 aa9.48□□□□□ -0.89
CUX2-202ENST00000397643 PPDPFQ9H3Y8 114 aa9.48□□□□□ -0.89
CUX2-202ENST00000397643 A0A087X002 238 aa9.47□□□□□ -0.89
CUX2-202ENST00000397643 M0R378 163 aa9.47□□□□□ -0.89
CUX2-202ENST00000397643 EIF4EBP3O60516 100 aaPredicted RBP9.47□□□□□ -0.89
CUX2-202ENST00000397643 C2orf91Q6ZV80 131 aa9.47□□□□□ -0.89
CUX2-202ENST00000397643 Q8NDZ9 215 aa9.47□□□□□ -0.89
CUX2-202ENST00000397643 PRO1933Q9H354 126 aa9.47□□□□□ -0.89
CUX2-202ENST00000397643 LINC00518Q8N0U6 118 aa9.46□□□□□ -0.9
CUX2-202ENST00000397643 GAGE10A6NGK3 116 aa9.45□□□□□ -0.9
CUX2-202ENST00000397643 NCR3O14931 201 aa9.45□□□□□ -0.9
CUX2-202ENST00000397643 LINC00167Q96N53 147 aa9.45□□□□□ -0.9
CUX2-202ENST00000397643 TRBV10-2A0A0K0K1G8 114 aa9.44□□□□□ -0.9
CUX2-202ENST00000397643 TAL2Q16559 108 aa9.44□□□□□ -0.9
CUX2-202ENST00000397643 TSTD3H0UI37 97 aa9.42□□□□□ -0.9
CUX2-202ENST00000397643 RPL37AP8A6NKH3 93 aa9.41□□□□□ -0.9
CUX2-202ENST00000397643 S100A7L2Q5SY68 101 aa9.41□□□□□ -0.9
CUX2-202ENST00000397643 HSD52Q0P140 79 aa9.4□□□□□ -0.9
CUX2-202ENST00000397643 IGKV2-28A0A075B6P5 120 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 A4D1N5 150 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 IGKV2D-28P01615 120 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 DDTP30046 118 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 CEND1Q8N111 149 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 OR13C6PQ8NH95 151 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 TYMSOSQ8TAI1 123 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 RETNLBQ9BQ08 111 aa9.39□□□□□ -0.91
CUX2-202ENST00000397643 TRBV10-3A0A0K0K1G6 114 aa9.38□□□□□ -0.91
CUX2-202ENST00000397643 CRYGAP11844 174 aa9.38□□□□□ -0.91
CUX2-202ENST00000397643 TRAV13-2A0A0B4J235 113 aa9.37□□□□□ -0.91
CUX2-202ENST00000397643 KRTAP13-2Q52LG2 175 aa9.37□□□□□ -0.91
CUX2-202ENST00000397643 CBY1Q9Y3M2 126 aa9.37□□□□□ -0.91
CUX2-202ENST00000397643 TMEM238LA0A1B0GVL6 79 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 A6NDN8 102 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 A6NJY4 79 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 IGLV6-57P01721 117 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 TPRXLQ17RH7 258 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 TMEM126AQ9H061 195 aa9.36□□□□□ -0.91
CUX2-202ENST00000397643 PRYO14603 147 aa9.35□□□□□ -0.91
CUX2-202ENST00000397643 BCE1O60756 84 aa9.35□□□□□ -0.91
CUX2-202ENST00000397643 LINC00337Q8N6G1 96 aa9.35□□□□□ -0.91
CUX2-202ENST00000397643 KCNQ1DNQ9H478 68 aa9.35□□□□□ -0.91
CUX2-202ENST00000397643 ANAPC11Q9NYG5 84 aa9.35□□□□□ -0.91
CUX2-202ENST00000397643 RPL28P46779 137 aaKnown RBP9.34□□□□□ -0.91
CUX2-202ENST00000397643 FSIP2Q5CZC0 6907 aa9.33□□□□□ -0.92
CUX2-202ENST00000397643 CTAG1AP78358 180 aa9.33□□□□□ -0.92
CUX2-202ENST00000397643 CDIP1Q9H305 208 aa9.33□□□□□ -0.92
CUX2-202ENST00000397643 TRAV23DV6A0A075B6W5 121 aa9.32□□□□□ -0.92
CUX2-202ENST00000397643 FXYD2P54710 66 aa9.32□□□□□ -0.92
CUX2-202ENST00000397643 RAB37Q96AX2 223 aa9.32□□□□□ -0.92
CUX2-202ENST00000397643 CFC1BP0CG36 223 aa9.31□□□□□ -0.92
CUX2-202ENST00000397643 CFC1P0CG37 223 aa9.31□□□□□ -0.92
CUX2-202ENST00000397643 KRTAP13-1Q8IUC0 172 aa9.31□□□□□ -0.92
CUX2-202ENST00000397643 A0A0B4J2C4 111 aa9.3□□□□□ -0.92
CUX2-202ENST00000397643 LINC00304Q8N9R0 145 aa9.3□□□□□ -0.92
CUX2-202ENST00000397643 ETDCA0A1B0GVM5 59 aa9.29□□□□□ -0.92
CUX2-202ENST00000397643 M0R143 59 aa9.29□□□□□ -0.92
CUX2-202ENST00000397643 BVES-AS1Q5T3Y7 98 aa9.29□□□□□ -0.92
CUX2-202ENST00000397643 IGLV7-46A0A075B6I9 117 aa9.28□□□□□ -0.92
CUX2-202ENST00000397643 ZNF73O43830 326 aaPredicted RBP9.28□□□□□ -0.92
CUX2-202ENST00000397643 SPRR1AP35321 89 aa9.28□□□□□ -0.92
CUX2-202ENST00000397643 UBE2AP49459 152 aa9.28□□□□□ -0.92
CUX2-202ENST00000397643 HINT1P49773 126 aaPredicted RBP9.28□□□□□ -0.92
CUX2-202ENST00000397643 FAM19A1Q7Z5A9 133 aa9.28□□□□□ -0.92
CUX2-202ENST00000397643 FAM229BQ4G0N7 80 aa9.27□□□□□ -0.93
CUX2-202ENST00000397643 LCE2DQ5TA82 110 aaPredicted RBP9.27□□□□□ -0.93
CUX2-202ENST00000397643 NHP2Q9NX24 153 aaKnown RBP9.27□□□□□ -0.93
CUX2-202ENST00000397643 PRO1854Q9UHT4 67 aa9.26□□□□□ -0.93
CUX2-202ENST00000397643 SMIM11BQ8TCY0 68 aa9.25□□□□□ -0.93
CUX2-202ENST00000397643 A0A1B0GWB2 263 aa9.24□□□□□ -0.93
CUX2-202ENST00000397643 KRTAP4-16G5E9R7 235 aaPredicted RBP9.24□□□□□ -0.93
CUX2-202ENST00000397643 H7C2G1 150 aa9.24□□□□□ -0.93
CUX2-202ENST00000397643 C6orf99Q4VX62 202 aa9.24□□□□□ -0.93
CUX2-202ENST00000397643 B5MCH6 92 aa9.23□□□□□ -0.93
CUX2-202ENST00000397643 PRLHP81277 87 aa9.23□□□□□ -0.93
CUX2-202ENST00000397643 TRBV7-6A0A0J9YX20 115 aa9.22□□□□□ -0.93
CUX2-202ENST00000397643 VAMP3Q15836 100 aa9.22□□□□□ -0.93
CUX2-202ENST00000397643 Q1RN00 199 aa9.22□□□□□ -0.93
CUX2-202ENST00000397643 CRCT1Q9UGL9 99 aa9.22□□□□□ -0.93
CUX2-202ENST00000397643 K7ERJ3 54 aa9.21□□□□□ -0.94
CUX2-202ENST00000397643 COX7BP24311 80 aa9.21□□□□□ -0.94
CUX2-202ENST00000397643 Q6ZRX8 168 aa9.2□□□□□ -0.94
CUX2-202ENST00000397643 ELOF1P60002 83 aaKnown RBP9.19□□□□□ -0.94
CUX2-202ENST00000397643 BATFQ16520 125 aa9.19□□□□□ -0.94
CUX2-202ENST00000397643 HIGD2AQ9BW72 106 aa9.19□□□□□ -0.94
CUX2-202ENST00000397643 KRTAP4-1Q9BYQ7 146 aa9.18□□□□□ -0.94
CUX2-202ENST00000397643 PCP4L1A6NKN8 68 aa9.17□□□□□ -0.94
CUX2-202ENST00000397643 DHRS4-AS1Q9P1J3 65 aa9.17□□□□□ -0.94
CUX2-202ENST00000397643 C3orf22Q8N5N4 141 aa9.16□□□□□ -0.94
CUX2-202ENST00000397643 SMCR5Q8TEV8 140 aa9.16□□□□□ -0.94
CUX2-202ENST00000397643 PSMB2P49721 201 aa9.15□□□□□ -0.94
CUX2-202ENST00000397643 LINC01547P58512 204 aaPredicted RBP9.15□□□□□ -0.94
CUX2-202ENST00000397643 ASB16-AS1Q495Z4 193 aa9.15□□□□□ -0.94
CUX2-202ENST00000397643 Q9BRP9 147 aa9.15□□□□□ -0.94
CUX2-202ENST00000397643 H0YGX0 51 aa9.14□□□□□ -0.95
CUX2-202ENST00000397643 SLC25A20O43772 301 aa9.13□□□□□ -0.95
CUX2-202ENST00000397643 KRTAP13-3Q3SY46 172 aa9.13□□□□□ -0.95
CUX2-202ENST00000397643 COX6CP09669 75 aa9.12□□□□□ -0.95
CUX2-202ENST00000397643 FP248Q71RG6 208 aaPredicted RBP9.12□□□□□ -0.95
CUX2-202ENST00000397643 ZNF706Q9Y5V0 76 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms