RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 C16orf95Q9H693 158 aa7.41□□□□□ -1.22
CCDC40-204ENST00000397545 PRLHP81277 87 aa7.41□□□□□ -1.22
CCDC40-204ENST00000397545 CASC2Q6XLA1 102 aa7.41□□□□□ -1.22
CCDC40-204ENST00000397545 KRTAP1-3Q8IUG1 177 aa7.4□□□□□ -1.23
CCDC40-204ENST00000397545 REG3GQ6UW15 175 aa7.39□□□□□ -1.23
CCDC40-204ENST00000397545 NIPBLQ6KC79 2804 aaeCLIP7.39□□□□□ -1.23
CCDC40-204ENST00000397545 C6orf48Q9UBA6 75 aa7.39□□□□□ -1.23
CCDC40-204ENST00000397545 V9GYY9 64 aa7.39□□□□□ -1.23
CCDC40-204ENST00000397545 KIAA0087Q14695 138 aa7.38□□□□□ -1.23
CCDC40-204ENST00000397545 PCOTHQ58A44 107 aa7.38□□□□□ -1.23
CCDC40-204ENST00000397545 C1orf195Q5TG92 126 aa7.38□□□□□ -1.23
CCDC40-204ENST00000397545 SMCR5Q8TEV8 140 aa7.38□□□□□ -1.23
CCDC40-204ENST00000397545 CRYGAP11844 174 aa7.38□□□□□ -1.23
CCDC40-204ENST00000397545 NBPF19A0A087WUL8 3843 aa7.37□□□□□ -1.23
CCDC40-204ENST00000397545 MRPL55Q7Z7F7 128 aaKnown RBP7.37□□□□□ -1.23
CCDC40-204ENST00000397545 X6R8D5 127 aa7.37□□□□□ -1.23
CCDC40-204ENST00000397545 KRTAP24-1Q3LI83 254 aa7.37□□□□□ -1.23
CCDC40-204ENST00000397545 C7orf33Q8WU49 177 aa7.36□□□□□ -1.23
CCDC40-204ENST00000397545 C2orf48Q96LS8 159 aa7.36□□□□□ -1.23
CCDC40-204ENST00000397545 Q9BRP9 147 aa7.36□□□□□ -1.23
CCDC40-204ENST00000397545 TRBV7-6A0A0J9YX20 115 aa7.36□□□□□ -1.23
CCDC40-204ENST00000397545 ESRGQ1W209 222 aa7.36□□□□□ -1.23
CCDC40-204ENST00000397545 ZNF469Q96JG9 3925 aaPredicted RBP7.36□□□□□ -1.23
CCDC40-204ENST00000397545 LINC01561Q8N1V8 128 aa7.35□□□□□ -1.23
CCDC40-204ENST00000397545 HIVEP1P15822 2718 aa7.35□□□□□ -1.23
CCDC40-204ENST00000397545 C4orf26Q17RF5 130 aa7.35□□□□□ -1.23
CCDC40-204ENST00000397545 C22orf24Q9Y442 160 aa7.35□□□□□ -1.23
CCDC40-204ENST00000397545 SEC61GP60059 68 aa7.35□□□□□ -1.23
CCDC40-204ENST00000397545 NHLRC4P0CG21 123 aaPredicted RBP7.34□□□□□ -1.23
CCDC40-204ENST00000397545 IGHV6-1A0A0B4J1U7 121 aa7.34□□□□□ -1.23
CCDC40-204ENST00000397545 NBEAL2Q6ZNJ1 2754 aa7.34□□□□□ -1.23
CCDC40-204ENST00000397545 SMIM29Q86T20 159 aa7.34□□□□□ -1.23
CCDC40-204ENST00000397545 PRR15LQ9BU68 103 aa7.33□□□□□ -1.24
CCDC40-204ENST00000397545 CXCL6P80162 114 aa7.33□□□□□ -1.24
CCDC40-204ENST00000397545 PMAIP1Q13794 54 aa7.33□□□□□ -1.24
CCDC40-204ENST00000397545 TENM4Q6N022 2769 aa7.32□□□□□ -1.24
CCDC40-204ENST00000397545 Q6ZQT0 140 aa7.32□□□□□ -1.24
CCDC40-204ENST00000397545 IL17DQ8TAD2 202 aa7.32□□□□□ -1.24
CCDC40-204ENST00000397545 TM2D3Q9BRN9 247 aa7.32□□□□□ -1.24
CCDC40-204ENST00000397545 LINC00167Q96N53 147 aa7.32□□□□□ -1.24
CCDC40-204ENST00000397545 LY6G6CO95867 125 aa7.31□□□□□ -1.24
CCDC40-204ENST00000397545 CIRBP-AS1Q8TBR5 109 aa7.31□□□□□ -1.24
CCDC40-204ENST00000397545 RETNLBQ9BQ08 111 aa7.31□□□□□ -1.24
CCDC40-204ENST00000397545 H0Y9P7 68 aa7.3□□□□□ -1.24
CCDC40-204ENST00000397545 LINC01556Q5JQF7 62 aa7.3□□□□□ -1.24
CCDC40-204ENST00000397545 HCG22E2RYF7 251 aa7.3□□□□□ -1.24
CCDC40-204ENST00000397545 ST20-AS1Q8NBB2 130 aa7.28□□□□□ -1.24
CCDC40-204ENST00000397545 ZNF706Q9Y5V0 76 aaPredicted RBP7.28□□□□□ -1.24
CCDC40-204ENST00000397545 KRTAP1-1Q07627 177 aa7.27□□□□□ -1.25
CCDC40-204ENST00000397545 C9orf129Q5T035 196 aaKnown RBP7.27□□□□□ -1.25
CCDC40-204ENST00000397545 ELOF1P60002 83 aaKnown RBP7.27□□□□□ -1.25
CCDC40-204ENST00000397545 LINC00474Q9P2X8 69 aa7.27□□□□□ -1.25
CCDC40-204ENST00000397545 Q8NAQ8 132 aa7.25□□□□□ -1.25
CCDC40-204ENST00000397545 GIG44P09565 113 aaPredicted RBP7.24□□□□□ -1.25
CCDC40-204ENST00000397545 C1orf64Q8NEQ6 169 aa7.24□□□□□ -1.25
CCDC40-204ENST00000397545 RPS28P62857 69 aaKnown RBP7.24□□□□□ -1.25
CCDC40-204ENST00000397545 Q6ZRP5 223 aa7.24□□□□□ -1.25
CCDC40-204ENST00000397545 CSNK1G2-AS1Q8NCQ2 148 aa7.23□□□□□ -1.25
CCDC40-204ENST00000397545 LOC110117498A0A087WWA1 95 aa7.23□□□□□ -1.25
CCDC40-204ENST00000397545 Q8NBF4 154 aa7.22□□□□□ -1.25
CCDC40-204ENST00000397545 FAM104AQ969W3 186 aa7.22□□□□□ -1.25
CCDC40-204ENST00000397545 VPREB1P12018 145 aa7.21□□□□□ -1.25
CCDC40-204ENST00000397545 LINC00476Q8WZB0 136 aa7.21□□□□□ -1.25
CCDC40-204ENST00000397545 SPINK1P00995 79 aa7.21□□□□□ -1.25
CCDC40-204ENST00000397545 F8WDY8 70 aa7.21□□□□□ -1.26
CCDC40-204ENST00000397545 RPL37AP61513 92 aaKnown RBP7.21□□□□□ -1.26
CCDC40-204ENST00000397545 PRO0628Q9UI54 55 aa7.21□□□□□ -1.26
CCDC40-204ENST00000397545 FAM168BA1KXE4 195 aa7.21□□□□□ -1.26
CCDC40-204ENST00000397545 IGLV6-57P01721 117 aa7.21□□□□□ -1.26
CCDC40-204ENST00000397545 Q6ZRX8 168 aa7.21□□□□□ -1.26
CCDC40-204ENST00000397545 PDZD2O15018 2839 aa7.2□□□□□ -1.26
CCDC40-204ENST00000397545 KMT2BQ9UMN6 2715 aaPredicted RBP7.2□□□□□ -1.26
CCDC40-204ENST00000397545 CHTF8P0CG12 524 aa7.19□□□□□ -1.26
CCDC40-204ENST00000397545 PHF5AQ7RTV0 110 aaKnown RBP7.19□□□□□ -1.26
CCDC40-204ENST00000397545 AKAP9Q99996 3911 aa7.19□□□□□ -1.26
CCDC40-204ENST00000397545 KRTAP10-3P60369 221 aa7.19□□□□□ -1.26
CCDC40-204ENST00000397545 IGLV5-52A0A0A0MRZ9 124 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 hDV103S1A0JD37 113 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 SERTAD4-AS1Q5TG53 156 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 C19orf73Q9NVV2 129 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 A0A0G2JQZ4 141 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 A0A1W2PNN7 141 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 MDFIQ99750 246 aa7.18□□□□□ -1.26
CCDC40-204ENST00000397545 BCE1O60756 84 aa7.17□□□□□ -1.26
CCDC40-204ENST00000397545 LINC00588Q9Y4M8 146 aa7.16□□□□□ -1.26
CCDC40-204ENST00000397545 NUPR2A6NF83 97 aa7.16□□□□□ -1.26
CCDC40-204ENST00000397545 TRBV7-4A0A0J9YYF1 115 aa7.16□□□□□ -1.26
CCDC40-204ENST00000397545 MOBPQ13875 183 aa7.16□□□□□ -1.26
CCDC40-204ENST00000397545 K7EQZ3 153 aa7.15□□□□□ -1.27
CCDC40-204ENST00000397545 GVQW2A0A096LPI5 108 aaPredicted RBP7.14□□□□□ -1.27
CCDC40-204ENST00000397545 LINC00528Q8N1L1 170 aa7.14□□□□□ -1.27
CCDC40-204ENST00000397545 K7ERS5 55 aa7.14□□□□□ -1.27
CCDC40-204ENST00000397545 ANK3Q12955 4377 aaKnown RBP7.13□□□□□ -1.27
CCDC40-204ENST00000397545 EPM2AB3EWF7 344 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 SPAG11AQ6PDA7 123 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 STAB2Q8WWQ8 2551 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 H3BNG1 76 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 IGKV2D-30A0A075B6S6 120 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 IGKV2-30P06310 120 aa7.13□□□□□ -1.27
CCDC40-204ENST00000397545 VWFP04275 2813 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms