RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 SMCR5Q8TEV8 140 aa9.8□□□□□ -0.84
HMGN4-201ENST00000377575 TRAV23DV6A0A075B6W5 121 aa9.79□□□□□ -0.84
HMGN4-201ENST00000377575 B5MCH6 92 aa9.79□□□□□ -0.84
HMGN4-201ENST00000377575 CTAG1AP78358 180 aa9.79□□□□□ -0.84
HMGN4-201ENST00000377575 C3orf22Q8N5N4 141 aa9.79□□□□□ -0.84
HMGN4-201ENST00000377575 CBY1Q9Y3M2 126 aa9.78□□□□□ -0.84
HMGN4-201ENST00000377575 Q6ZRX8 168 aa9.77□□□□□ -0.85
HMGN4-201ENST00000377575 LITAFQ99732 161 aa9.77□□□□□ -0.85
HMGN4-201ENST00000377575 SPANXCQ9NY87 97 aa9.77□□□□□ -0.85
HMGN4-201ENST00000377575 EIF4EBP3O60516 100 aaPredicted RBP9.76□□□□□ -0.85
HMGN4-201ENST00000377575 AKR1D1P51857 326 aa9.76□□□□□ -0.85
HMGN4-201ENST00000377575 LINC00308Q8TCZ7 52 aa9.76□□□□□ -0.85
HMGN4-201ENST00000377575 JOSD1Q15040 202 aaPredicted RBP9.75□□□□□ -0.85
HMGN4-201ENST00000377575 ZNF73O43830 326 aaPredicted RBP9.74□□□□□ -0.85
HMGN4-201ENST00000377575 LINC00483Q53H64 154 aa9.74□□□□□ -0.85
HMGN4-201ENST00000377575 SPAG11AQ6PDA7 123 aa9.74□□□□□ -0.85
HMGN4-201ENST00000377575 TTTY13Q9BZ97 58 aa9.74□□□□□ -0.85
HMGN4-201ENST00000377575 PPDPFQ9H3Y8 114 aa9.74□□□□□ -0.85
HMGN4-201ENST00000377575 RNF213Q63HN8 5207 aa9.74□□□□□ -0.85
HMGN4-201ENST00000377575 SCGB1D4Q6XE38 83 aa9.73□□□□□ -0.85
HMGN4-201ENST00000377575 Q9BRP9 147 aa9.73□□□□□ -0.85
HMGN4-201ENST00000377575 S100A1P23297 94 aa9.72□□□□□ -0.85
HMGN4-201ENST00000377575 HINT1P49773 126 aaPredicted RBP9.72□□□□□ -0.85
HMGN4-201ENST00000377575 GAGE2AQ6NT46 116 aa9.72□□□□□ -0.85
HMGN4-201ENST00000377575 ERC2-IT1O76042 136 aa9.71□□□□□ -0.86
HMGN4-201ENST00000377575 OR13C6PQ8NH95 151 aa9.71□□□□□ -0.86
HMGN4-201ENST00000377575 COPS9Q8WXC6 57 aa9.71□□□□□ -0.86
HMGN4-201ENST00000377575 RETNLBQ9BQ08 111 aa9.71□□□□□ -0.86
HMGN4-201ENST00000377575 ATOH7Q8N100 152 aa9.7□□□□□ -0.86
HMGN4-201ENST00000377575 Q8NBF4 154 aa9.7□□□□□ -0.86
HMGN4-201ENST00000377575 SPANXDQ9BXN6 97 aa9.7□□□□□ -0.86
HMGN4-201ENST00000377575 ANKRD39Q53RE8 183 aa9.69□□□□□ -0.86
HMGN4-201ENST00000377575 LINC00518Q8N0U6 118 aa9.69□□□□□ -0.86
HMGN4-201ENST00000377575 S100A2P29034 98 aa9.68□□□□□ -0.86
HMGN4-201ENST00000377575 IGLV9-49A0A0B4J1Y8 123 aa9.66□□□□□ -0.86
HMGN4-201ENST00000377575 SNRPEP62304 92 aaKnown RBP9.66□□□□□ -0.86
HMGN4-201ENST00000377575 MOBPQ13875 183 aa9.66□□□□□ -0.86
HMGN4-201ENST00000377575 C5orf52A6NGY3 159 aa9.65□□□□□ -0.86
HMGN4-201ENST00000377575 IFITM1P13164 125 aa9.65□□□□□ -0.86
HMGN4-201ENST00000377575 Q6ZVH6 145 aa9.65□□□□□ -0.86
HMGN4-201ENST00000377575 HIST3H2BBQ8N257 126 aa9.65□□□□□ -0.86
HMGN4-201ENST00000377575 SPINK1P00995 79 aa9.64□□□□□ -0.87
HMGN4-201ENST00000377575 IGLV7-46A0A075B6I9 117 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 S100A6P06703 90 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 TPRXLQ17RH7 258 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 SSBP3-AS1Q7Z2R9 100 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 PCP2Q8IVA1 136 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 HIST1H2BLQ99880 126 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 DHRS4-AS1Q9P1J3 65 aa9.63□□□□□ -0.87
HMGN4-201ENST00000377575 C9orf153Q5TBE3 101 aa9.61□□□□□ -0.87
HMGN4-201ENST00000377575 FP248Q71RG6 208 aaPredicted RBP9.61□□□□□ -0.87
HMGN4-201ENST00000377575 HSBP1L1C9JCN9 74 aa9.6□□□□□ -0.87
HMGN4-201ENST00000377575 COX7BP24311 80 aa9.6□□□□□ -0.87
HMGN4-201ENST00000377575 ELOF1P60002 83 aaKnown RBP9.6□□□□□ -0.87
HMGN4-201ENST00000377575 C6orf99Q4VX62 202 aa9.6□□□□□ -0.87
HMGN4-201ENST00000377575 ST20-AS1Q8NBB2 130 aa9.6□□□□□ -0.87
HMGN4-201ENST00000377575 LOC100996750A0A140TA64 210 aa9.59□□□□□ -0.87
HMGN4-201ENST00000377575 RPS29P62273 56 aaKnown RBP9.59□□□□□ -0.87
HMGN4-201ENST00000377575 SLC25A34Q6PIV7 304 aa9.59□□□□□ -0.87
HMGN4-201ENST00000377575 KRTAP4-6Q9BYQ5 205 aa9.59□□□□□ -0.87
HMGN4-201ENST00000377575 CDIP1Q9H305 208 aa9.59□□□□□ -0.87
HMGN4-201ENST00000377575 MUSTN1Q8IVN3 82 aa9.58□□□□□ -0.88
HMGN4-201ENST00000377575 TRBV7-6A0A0J9YX20 115 aa9.57□□□□□ -0.88
HMGN4-201ENST00000377575 A6NDN8 102 aa9.57□□□□□ -0.88
HMGN4-201ENST00000377575 A0A1B0GWB2 263 aa9.55□□□□□ -0.88
HMGN4-201ENST00000377575 SPRR1BP22528 89 aa9.55□□□□□ -0.88
HMGN4-201ENST00000377575 TRAV13-2A0A0B4J235 113 aa9.54□□□□□ -0.88
HMGN4-201ENST00000377575 LAMTOR3Q9UHA4 124 aa9.53□□□□□ -0.88
HMGN4-201ENST00000377575 Q8N377 158 aa9.52□□□□□ -0.89
HMGN4-201ENST00000377575 SLC25A20O43772 301 aa9.51□□□□□ -0.89
HMGN4-201ENST00000377575 A0A0U1RQV1 116 aa9.5□□□□□ -0.89
HMGN4-201ENST00000377575 A4D1N5 150 aa9.5□□□□□ -0.89
HMGN4-201ENST00000377575 SCGB1D1O95968 90 aa9.5□□□□□ -0.89
HMGN4-201ENST00000377575 TAL2Q16559 108 aa9.5□□□□□ -0.89
HMGN4-201ENST00000377575 NHP2Q9NX24 153 aaKnown RBP9.49□□□□□ -0.89
HMGN4-201ENST00000377575 MUC2Q02817 5179 aa9.48□□□□□ -0.89
HMGN4-201ENST00000377575 TEX49A0A1B0GTD5 131 aa9.48□□□□□ -0.89
HMGN4-201ENST00000377575 DEFB105AQ8NG35 78 aa9.48□□□□□ -0.89
HMGN4-201ENST00000377575 KRTAP13-3Q3SY46 172 aa9.47□□□□□ -0.89
HMGN4-201ENST00000377575 SMIM11BQ8TCY0 68 aa9.47□□□□□ -0.89
HMGN4-201ENST00000377575 LIMD2Q9BT23 127 aa9.46□□□□□ -0.9
HMGN4-201ENST00000377575 Q1RN00 199 aa9.45□□□□□ -0.9
HMGN4-201ENST00000377575 MUC17Q685J3 4493 aa9.44□□□□□ -0.9
HMGN4-201ENST00000377575 IGLV5-48A0A075B6I7 105 aa9.43□□□□□ -0.9
HMGN4-201ENST00000377575 GHRHP01286 108 aa9.43□□□□□ -0.9
HMGN4-201ENST00000377575 VAMP3Q15836 100 aa9.43□□□□□ -0.9
HMGN4-201ENST00000377575 COX8AP10176 69 aa9.42□□□□□ -0.9
HMGN4-201ENST00000377575 HRCT1Q6UXD1 115 aa9.42□□□□□ -0.9
HMGN4-201ENST00000377575 HIST1H4GQ99525 98 aa9.42□□□□□ -0.9
HMGN4-201ENST00000377575 PRO1933Q9H354 126 aa9.42□□□□□ -0.9
HMGN4-201ENST00000377575 LINC01547P58512 204 aaPredicted RBP9.41□□□□□ -0.9
HMGN4-201ENST00000377575 CD164Q04900 197 aa9.4□□□□□ -0.9
HMGN4-201ENST00000377575 DLEU1O43261 78 aa9.39□□□□□ -0.91
HMGN4-201ENST00000377575 SMIM29Q86T20 159 aa9.39□□□□□ -0.91
HMGN4-201ENST00000377575 H7C2G1 150 aa9.37□□□□□ -0.91
HMGN4-201ENST00000377575 C12orf57Q99622 126 aa9.37□□□□□ -0.91
HMGN4-201ENST00000377575 LINC00575Q6W349 94 aa9.36□□□□□ -0.91
HMGN4-201ENST00000377575 hADV29S1A0JD25 119 aa9.35□□□□□ -0.91
HMGN4-201ENST00000377575 SPATA45Q537H7 98 aa9.35□□□□□ -0.91
HMGN4-201ENST00000377575 PAM16Q9Y3D7 125 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms