RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 H3BMG7 143 aa13.76□□□□□ -0.21
HOXA4-201ENST00000360046 Q6ZSA8 131 aa13.76□□□□□ -0.21
HOXA4-201ENST00000360046 DNAH8Q96JB1 4490 aa13.75□□□□□ -0.21
HOXA4-201ENST00000360046 IGLV1-50A0A075B6I6 118 aa13.75□□□□□ -0.21
HOXA4-201ENST00000360046 TRIAP1O43715 76 aa13.75□□□□□ -0.21
HOXA4-201ENST00000360046 RPL28P46779 137 aaKnown RBP13.75□□□□□ -0.21
HOXA4-201ENST00000360046 J3QR89 54 aa13.74□□□□□ -0.21
HOXA4-201ENST00000360046 UBE2BP63146 152 aa13.74□□□□□ -0.21
HOXA4-201ENST00000360046 EPM2AB3EWF7 344 aa13.73□□□□□ -0.21
HOXA4-201ENST00000360046 SCGB1C2P0DMR2 95 aa13.71□□□□□ -0.21
HOXA4-201ENST00000360046 C6orf99Q4VX62 202 aa13.71□□□□□ -0.21
HOXA4-201ENST00000360046 CIRBP-AS1Q8TBR5 109 aa13.71□□□□□ -0.21
HOXA4-201ENST00000360046 KCNQ1DNQ9H478 68 aa13.71□□□□□ -0.21
HOXA4-201ENST00000360046 PRO0461Q9UI25 63 aa13.71□□□□□ -0.21
HOXA4-201ENST00000360046 DYNC1H1Q14204 4646 aaKnown RBP13.71□□□□□ -0.21
HOXA4-201ENST00000360046 ZNF73O43830 326 aaPredicted RBP13.7□□□□□ -0.22
HOXA4-201ENST00000360046 COX6CP09669 75 aa13.7□□□□□ -0.22
HOXA4-201ENST00000360046 HAMPP81172 84 aa13.7□□□□□ -0.22
HOXA4-201ENST00000360046 SCXQ7RTU7 201 aa13.7□□□□□ -0.22
HOXA4-201ENST00000360046 LRP1BQ9NZR2 4599 aa13.69□□□□□ -0.22
HOXA4-201ENST00000360046 PRYO14603 147 aa13.69□□□□□ -0.22
HOXA4-201ENST00000360046 DIRC1Q969H9 104 aa13.69□□□□□ -0.22
HOXA4-201ENST00000360046 KRTAP11-1Q8IUC1 163 aa13.66□□□□□ -0.22
HOXA4-201ENST00000360046 BIRC6Q9NR09 4857 aa13.66□□□□□ -0.22
HOXA4-201ENST00000360046 REG3GQ6UW15 175 aa13.65□□□□□ -0.22
HOXA4-201ENST00000360046 CLEC2BQ92478 149 aa13.63□□□□□ -0.23
HOXA4-201ENST00000360046 TCL1BO95988 128 aa13.62□□□□□ -0.23
HOXA4-201ENST00000360046 ETDCA0A1B0GVM5 59 aa13.61□□□□□ -0.23
HOXA4-201ENST00000360046 ETDBQ3ZM63 59 aa13.61□□□□□ -0.23
HOXA4-201ENST00000360046 H0YGX0 51 aa13.61□□□□□ -0.23
HOXA4-201ENST00000360046 COX7BP24311 80 aa13.61□□□□□ -0.23
HOXA4-201ENST00000360046 SPRR1AP35321 89 aa13.61□□□□□ -0.23
HOXA4-201ENST00000360046 PCP4P48539 62 aa13.6□□□□□ -0.23
HOXA4-201ENST00000360046 TRBV7-6A0A0J9YX20 115 aa13.59□□□□□ -0.23
HOXA4-201ENST00000360046 ELOF1P60002 83 aaKnown RBP13.59□□□□□ -0.23
HOXA4-201ENST00000360046 ATXN8Q156A1 80 aa13.58□□□□□ -0.24
HOXA4-201ENST00000360046 KRTAP4-16G5E9R7 235 aaPredicted RBP13.57□□□□□ -0.24
HOXA4-201ENST00000360046 XGP55808 180 aa13.57□□□□□ -0.24
HOXA4-201ENST00000360046 FAM218AQ96MZ4 157 aa13.57□□□□□ -0.24
HOXA4-201ENST00000360046 FAM19A1Q7Z5A9 133 aa13.56□□□□□ -0.24
HOXA4-201ENST00000360046 SMCPP49901 116 aaPredicted RBP13.56□□□□□ -0.24
HOXA4-201ENST00000360046 PSORS1C2Q9UIG4 136 aa13.56□□□□□ -0.24
HOXA4-201ENST00000360046 B5MCH6 92 aa13.55□□□□□ -0.24
HOXA4-201ENST00000360046 LINC01600Q96MT4 127 aa13.55□□□□□ -0.24
HOXA4-201ENST00000360046 Q6ZRX8 168 aa13.54□□□□□ -0.24
HOXA4-201ENST00000360046 TEN1Q86WV5 123 aa13.54□□□□□ -0.24
HOXA4-201ENST00000360046 LINC00528Q8N1L1 170 aa13.54□□□□□ -0.24
HOXA4-201ENST00000360046 LST1O00453 97 aa13.53□□□□□ -0.24
HOXA4-201ENST00000360046 APOBP04114 4563 aaKnown RBP13.53□□□□□ -0.24
HOXA4-201ENST00000360046 BCE1O60756 84 aa13.53□□□□□ -0.24
HOXA4-201ENST00000360046 LINC00575Q6W349 94 aa13.53□□□□□ -0.24
HOXA4-201ENST00000360046 PPDPFLQ8WWR9 84 aa13.53□□□□□ -0.24
HOXA4-201ENST00000360046 SLC25A20O43772 301 aa13.52□□□□□ -0.25
HOXA4-201ENST00000360046 PRLHP81277 87 aa13.52□□□□□ -0.25
HOXA4-201ENST00000360046 MTURNQ8N3F0 131 aa13.52□□□□□ -0.25
HOXA4-201ENST00000360046 UBE2AP49459 152 aa13.51□□□□□ -0.25
HOXA4-201ENST00000360046 C1orf137Q5JT78 98 aa13.51□□□□□ -0.25
HOXA4-201ENST00000360046 SNCGO76070 127 aa13.5□□□□□ -0.25
HOXA4-201ENST00000360046 hADV29S1A0JD25 119 aa13.49□□□□□ -0.25
HOXA4-201ENST00000360046 SMR3BP02814 79 aaPredicted RBP13.49□□□□□ -0.25
HOXA4-201ENST00000360046 C9JAW5 83 aa13.47□□□□□ -0.25
HOXA4-201ENST00000360046 DNAL4O96015 105 aa13.47□□□□□ -0.25
HOXA4-201ENST00000360046 Q9BRP9 147 aa13.47□□□□□ -0.25
HOXA4-201ENST00000360046 TRACP01848 142 aa13.47□□□□□ -0.25
HOXA4-201ENST00000360046 DHRS4-AS1Q9P1J3 65 aa13.47□□□□□ -0.25
HOXA4-201ENST00000360046 A0A1B0GX51 115 aa13.46□□□□□ -0.25
HOXA4-201ENST00000360046 SIGMAR1Q99720 223 aa13.46□□□□□ -0.25
HOXA4-201ENST00000360046 ANKRD29Q8N6D5 301 aa13.45□□□□□ -0.26
HOXA4-201ENST00000360046 HIGD2AQ9BW72 106 aa13.45□□□□□ -0.26
HOXA4-201ENST00000360046 INAFM2P0DMQ5 153 aa13.44□□□□□ -0.26
HOXA4-201ENST00000360046 SRRM2Q9UQ35 2752 aaKnown RBP13.44□□□□□ -0.26
HOXA4-201ENST00000360046 H0Y9J4 135 aa13.44□□□□□ -0.26
HOXA4-201ENST00000360046 CDK2AP2O75956 126 aa13.44□□□□□ -0.26
HOXA4-201ENST00000360046 SMCR5Q8TEV8 140 aa13.43□□□□□ -0.26
HOXA4-201ENST00000360046 H3BT86 120 aa13.42□□□□□ -0.26
HOXA4-201ENST00000360046 SCGB1A1P11684 91 aa13.42□□□□□ -0.26
HOXA4-201ENST00000360046 KRTAP13-1Q8IUC0 172 aa13.42□□□□□ -0.26
HOXA4-201ENST00000360046 Q6ZQY7 126 aa13.41□□□□□ -0.26
HOXA4-201ENST00000360046 ERC2-IT1O76042 136 aa13.4□□□□□ -0.26
HOXA4-201ENST00000360046 IGLV7-43P04211 117 aa13.4□□□□□ -0.26
HOXA4-201ENST00000360046 VPS13BQ7Z7G8 4022 aa13.38□□□□□ -0.27
HOXA4-201ENST00000360046 ZNF861PO60384 105 aa13.37□□□□□ -0.27
HOXA4-201ENST00000360046 RPL37AP61513 92 aaKnown RBP13.37□□□□□ -0.27
HOXA4-201ENST00000360046 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.37□□□□□ -0.27
HOXA4-201ENST00000360046 ORMDL1Q9P0S3 153 aa13.36□□□□□ -0.27
HOXA4-201ENST00000360046 KIAA1109Q2LD37 5005 aa13.35□□□□□ -0.27
HOXA4-201ENST00000360046 ST20-AS1Q8NBB2 130 aa13.34□□□□□ -0.27
HOXA4-201ENST00000360046 BAALC-AS2P0C853 105 aa13.33□□□□□ -0.28
HOXA4-201ENST00000360046 DEFB105AQ8NG35 78 aa13.33□□□□□ -0.28
HOXA4-201ENST00000360046 C21orf62-AS1Q17RA5 79 aa13.32□□□□□ -0.28
HOXA4-201ENST00000360046 RYR1P21817 5038 aa13.32□□□□□ -0.28
HOXA4-201ENST00000360046 FAM229AH3BQW9 127 aa13.3□□□□□ -0.28
HOXA4-201ENST00000360046 CDIP1Q9H305 208 aa13.3□□□□□ -0.28
HOXA4-201ENST00000360046 FAT1Q14517 4588 aa13.29□□□□□ -0.28
HOXA4-201ENST00000360046 HSPG2P98160 4391 aa13.29□□□□□ -0.28
HOXA4-201ENST00000360046 GHRHP01286 108 aa13.28□□□□□ -0.28
HOXA4-201ENST00000360046 TMEM256-PLSCR3K7ERE1 68 aa13.27□□□□□ -0.29
HOXA4-201ENST00000360046 IGLV5-48A0A075B6I7 105 aa13.25□□□□□ -0.29
HOXA4-201ENST00000360046 LINC01547P58512 204 aaPredicted RBP13.25□□□□□ -0.29
HOXA4-201ENST00000360046 H3BQ85 93 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms