RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ATP5EP2Q5VTU8 51 aa13.54□□□□□ -0.24
CCDC88B-203ENST00000359902 C7orf33Q8WU49 177 aa13.54□□□□□ -0.24
CCDC88B-203ENST00000359902 KCNQ1DNQ9H478 68 aa13.54□□□□□ -0.24
CCDC88B-203ENST00000359902 DNAH1Q9P2D7 4330 aa13.53□□□□□ -0.24
CCDC88B-203ENST00000359902 LOC107984640A0A0U1RRK4 108 aa13.53□□□□□ -0.24
CCDC88B-203ENST00000359902 UPK3BQ9BT76 320 aa13.53□□□□□ -0.24
CCDC88B-203ENST00000359902 RMI2Q96E14 147 aa13.52□□□□□ -0.24
CCDC88B-203ENST00000359902 PLA2G2DQ9UNK4 145 aa13.52□□□□□ -0.25
CCDC88B-203ENST00000359902 TRBV7-4A0A0J9YYF1 115 aa13.51□□□□□ -0.25
CCDC88B-203ENST00000359902 RPS28P62857 69 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-203ENST00000359902 FAM168BA1KXE4 195 aa13.48□□□□□ -0.25
CCDC88B-203ENST00000359902 SERP2Q8N6R1 65 aa13.47□□□□□ -0.25
CCDC88B-203ENST00000359902 FAM19A5Q7Z5A7 132 aaPredicted RBP13.46□□□□□ -0.25
CCDC88B-203ENST00000359902 FAM19A1Q7Z5A9 133 aa13.46□□□□□ -0.25
CCDC88B-203ENST00000359902 IGLV5-37A0A075B6J1 123 aa13.46□□□□□ -0.26
CCDC88B-203ENST00000359902 MGAM2Q2M2H8 2515 aa13.45□□□□□ -0.26
CCDC88B-203ENST00000359902 TMEM258P61165 79 aa13.45□□□□□ -0.26
CCDC88B-203ENST00000359902 Q6ZVQ6 151 aa13.45□□□□□ -0.26
CCDC88B-203ENST00000359902 KRTAP7-1Q8IUC3 87 aa13.45□□□□□ -0.26
CCDC88B-203ENST00000359902 RPL37AP8A6NKH3 93 aa13.44□□□□□ -0.26
CCDC88B-203ENST00000359902 C5orf47Q569G3 176 aa13.44□□□□□ -0.26
CCDC88B-203ENST00000359902 IGLV1-50A0A075B6I6 118 aa13.42□□□□□ -0.26
CCDC88B-203ENST00000359902 LINC01547P58512 204 aaPredicted RBP13.42□□□□□ -0.26
CCDC88B-203ENST00000359902 KRTAP4-16G5E9R7 235 aaPredicted RBP13.41□□□□□ -0.26
CCDC88B-203ENST00000359902 CYSTM1Q9H1C7 97 aa13.4□□□□□ -0.26
CCDC88B-203ENST00000359902 PRYO14603 147 aa13.39□□□□□ -0.27
CCDC88B-203ENST00000359902 HAMPP81172 84 aa13.39□□□□□ -0.27
CCDC88B-203ENST00000359902 KRTAP1-5Q9BYS1 174 aa13.39□□□□□ -0.27
CCDC88B-203ENST00000359902 SPRR1AP35321 89 aa13.39□□□□□ -0.27
CCDC88B-203ENST00000359902 Q6ZRX8 168 aa13.39□□□□□ -0.27
CCDC88B-203ENST00000359902 Q8N377 158 aa13.38□□□□□ -0.27
CCDC88B-203ENST00000359902 DEFB105AQ8NG35 78 aa13.38□□□□□ -0.27
CCDC88B-203ENST00000359902 DHRS4-AS1Q9P1J3 65 aa13.37□□□□□ -0.27
CCDC88B-203ENST00000359902 DPH3Q96FX2 82 aa13.36□□□□□ -0.27
CCDC88B-203ENST00000359902 Q9BRP9 147 aa13.36□□□□□ -0.27
CCDC88B-203ENST00000359902 COL7A1Q02388 2944 aa13.36□□□□□ -0.27
CCDC88B-203ENST00000359902 MRPL55Q7Z7F7 128 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-203ENST00000359902 ETDCA0A1B0GVM5 59 aa13.34□□□□□ -0.27
CCDC88B-203ENST00000359902 CXCL6P80162 114 aa13.34□□□□□ -0.27
CCDC88B-203ENST00000359902 STAB2Q8WWQ8 2551 aa13.34□□□□□ -0.27
CCDC88B-203ENST00000359902 APLNQ9ULZ1 77 aa13.33□□□□□ -0.28
CCDC88B-203ENST00000359902 DNAH9Q9NYC9 4486 aa13.31□□□□□ -0.28
CCDC88B-203ENST00000359902 IGLV5-48A0A075B6I7 105 aa13.29□□□□□ -0.28
CCDC88B-203ENST00000359902 MDFIQ99750 246 aa13.29□□□□□ -0.28
CCDC88B-203ENST00000359902 LYSTQ99698 3801 aa13.28□□□□□ -0.28
CCDC88B-203ENST00000359902 UBE2DNLQ8IWF7 75 aa13.28□□□□□ -0.28
CCDC88B-203ENST00000359902 ST20-AS1Q8NBB2 130 aa13.28□□□□□ -0.28
CCDC88B-203ENST00000359902 CNBPP62633 177 aaKnown RBP13.27□□□□□ -0.28
CCDC88B-203ENST00000359902 PSCAO43653 123 aa13.27□□□□□ -0.29
CCDC88B-203ENST00000359902 DNAH10Q8IVF4 4471 aa13.26□□□□□ -0.29
CCDC88B-203ENST00000359902 A0A096LNI7 61 aa13.26□□□□□ -0.29
CCDC88B-203ENST00000359902 SCXQ7RTU7 201 aa13.26□□□□□ -0.29
CCDC88B-203ENST00000359902 ERC2-IT1O76042 136 aa13.25□□□□□ -0.29
CCDC88B-203ENST00000359902 REG3GQ6UW15 175 aa13.25□□□□□ -0.29
CCDC88B-203ENST00000359902 B9D2Q9BPU9 175 aa13.25□□□□□ -0.29
CCDC88B-203ENST00000359902 C16orf90A8MZG2 172 aa13.24□□□□□ -0.29
CCDC88B-203ENST00000359902 UBE2BP63146 152 aa13.22□□□□□ -0.29
CCDC88B-203ENST00000359902 IGKV2-24A0A0C4DH68 120 aa13.22□□□□□ -0.29
CCDC88B-203ENST00000359902 TNP2Q05952 138 aa13.22□□□□□ -0.29
CCDC88B-203ENST00000359902 A0A1W2PNN7 141 aa13.21□□□□□ -0.29
CCDC88B-203ENST00000359902 BCE1O60756 84 aa13.21□□□□□ -0.29
CCDC88B-203ENST00000359902 DYNC2H1Q8NCM8 4307 aaKnown RBP13.21□□□□□ -0.3
CCDC88B-203ENST00000359902 C3orf84H3BNL1 204 aa13.2□□□□□ -0.3
CCDC88B-203ENST00000359902 OXTP01178 125 aa13.2□□□□□ -0.3
CCDC88B-203ENST00000359902 NREPQ16612 68 aa13.2□□□□□ -0.3
CCDC88B-203ENST00000359902 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-203ENST00000359902 A0A1W2PNM2 257 aa13.17□□□□□ -0.3
CCDC88B-203ENST00000359902 C1orf137Q5JT78 98 aa13.17□□□□□ -0.3
CCDC88B-203ENST00000359902 C14orf177Q52M58 125 aa13.16□□□□□ -0.3
CCDC88B-203ENST00000359902 TRAV7A0A075B6U4 112 aa13.15□□□□□ -0.3
CCDC88B-203ENST00000359902 FUSP35637 526 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC88B-203ENST00000359902 C20orf197Q8N268 126 aa13.14□□□□□ -0.31
CCDC88B-203ENST00000359902 A0A1B0GW54 56 aa13.14□□□□□ -0.31
CCDC88B-203ENST00000359902 CSMD3Q7Z407 3707 aa13.14□□□□□ -0.31
CCDC88B-203ENST00000359902 SMIM29Q86T20 159 aa13.13□□□□□ -0.31
CCDC88B-203ENST00000359902 TENM2Q9NT68 2774 aa13.12□□□□□ -0.31
CCDC88B-203ENST00000359902 C4orf26Q17RF5 130 aa13.12□□□□□ -0.31
CCDC88B-203ENST00000359902 Q5XG85 94 aa13.12□□□□□ -0.31
CCDC88B-203ENST00000359902 Q8N9L7 120 aa13.12□□□□□ -0.31
CCDC88B-203ENST00000359902 DNAH7Q8WXX0 4024 aa13.12□□□□□ -0.31
CCDC88B-203ENST00000359902 Q8NBF4 154 aa13.11□□□□□ -0.31
CCDC88B-203ENST00000359902 BPY2O14599 106 aa13.11□□□□□ -0.31
CCDC88B-203ENST00000359902 IGKV4-1P06312 121 aa13.11□□□□□ -0.31
CCDC88B-203ENST00000359902 CHTF8P0CG12 524 aa13.11□□□□□ -0.31
CCDC88B-203ENST00000359902 PRLHP81277 87 aa13.11□□□□□ -0.31
CCDC88B-203ENST00000359902 NBDYA0A0U1RRE5 68 aa13.1□□□□□ -0.31
CCDC88B-203ENST00000359902 FAM236DA0A1B0GTK5 79 aa13.1□□□□□ -0.31
CCDC88B-203ENST00000359902 LRCOL1A6NCL2 159 aa13.1□□□□□ -0.31
CCDC88B-203ENST00000359902 FAM236CP0DP71 79 aa13.1□□□□□ -0.31
CCDC88B-203ENST00000359902 NUPR2A6NF83 97 aa13.08□□□□□ -0.31
CCDC88B-203ENST00000359902 SPRR4Q96PI1 79 aa13.08□□□□□ -0.31
CCDC88B-203ENST00000359902 HRCT1Q6UXD1 115 aa13.08□□□□□ -0.32
CCDC88B-203ENST00000359902 C9orf163Q8N9P6 203 aa13.07□□□□□ -0.32
CCDC88B-203ENST00000359902 PLECQ15149 4684 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-203ENST00000359902 KRTAP11-1Q8IUC1 163 aa13.07□□□□□ -0.32
CCDC88B-203ENST00000359902 PHF5AQ7RTV0 110 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-203ENST00000359902 Q6ZRN7 208 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-203ENST00000359902 LINC00476Q8WZB0 136 aa13.04□□□□□ -0.32
CCDC88B-203ENST00000359902 HIGD2AQ9BW72 106 aa13.04□□□□□ -0.32
CCDC88B-203ENST00000359902 SERP1Q9Y6X1 66 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms