RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 KRTAP4-12Q9BQ66 201 aa6.15□□□□□ -1.42
ATG4A-202ENST00000345734 MEGF8Q7Z7M0 2845 aa6.15□□□□□ -1.43
ATG4A-202ENST00000345734 CYSTM1Q9H1C7 97 aa6.14□□□□□ -1.43
ATG4A-202ENST00000345734 LINC00337Q8N6G1 96 aa6.14□□□□□ -1.43
ATG4A-202ENST00000345734 KRTAP4-8Q9BYQ9 185 aa6.14□□□□□ -1.43
ATG4A-202ENST00000345734 IGKV2D-24A0A075B6R9 120 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 HIGD2BQ4VC39 106 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 Q9HAA7 133 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 VPS13DQ5THJ4 4388 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 KRTAP9-6A0A140TA67 174 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 KRTAP9-7A8MTY7 169 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 LST1O00453 97 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 SMCR5Q8TEV8 140 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 LAMTOR3Q9UHA4 124 aa6.13□□□□□ -1.43
ATG4A-202ENST00000345734 CD164Q04900 197 aa6.12□□□□□ -1.43
ATG4A-202ENST00000345734 COX17Q14061 63 aa6.12□□□□□ -1.43
ATG4A-202ENST00000345734 C15orf56Q8N910 161 aa6.12□□□□□ -1.43
ATG4A-202ENST00000345734 CLEC2BQ92478 149 aa6.12□□□□□ -1.43
ATG4A-202ENST00000345734 TRAV13-2A0A0B4J235 113 aa6.11□□□□□ -1.43
ATG4A-202ENST00000345734 INAFM2P0DMQ5 153 aa6.11□□□□□ -1.43
ATG4A-202ENST00000345734 PRR3P79522 188 aaKnown RBP6.11□□□□□ -1.43
ATG4A-202ENST00000345734 C6orf48Q9UBA6 75 aa6.11□□□□□ -1.43
ATG4A-202ENST00000345734 Q6JHZ5 121 aa6.1□□□□□ -1.43
ATG4A-202ENST00000345734 PMAIP1Q13794 54 aa6.1□□□□□ -1.43
ATG4A-202ENST00000345734 Q8NDZ9 215 aa6.1□□□□□ -1.43
ATG4A-202ENST00000345734 ATP5EP56381 51 aaPredicted RBP6.09□□□□□ -1.43
ATG4A-202ENST00000345734 BRK1Q8WUW1 75 aa6.09□□□□□ -1.43
ATG4A-202ENST00000345734 CAMK2N2Q96S95 79 aa6.09□□□□□ -1.43
ATG4A-202ENST00000345734 GVQW2A0A096LPI5 108 aaPredicted RBP6.08□□□□□ -1.44
ATG4A-202ENST00000345734 CASC10Q5T4H9 136 aa6.08□□□□□ -1.44
ATG4A-202ENST00000345734 SMIM11BQ8TCY0 68 aa6.08□□□□□ -1.44
ATG4A-202ENST00000345734 Q6ZRU5 148 aa6.08□□□□□ -1.44
ATG4A-202ENST00000345734 APLNQ9ULZ1 77 aa6.08□□□□□ -1.44
ATG4A-202ENST00000345734 BCE1O60756 84 aa6.07□□□□□ -1.44
ATG4A-202ENST00000345734 RPL28P46779 137 aaKnown RBP6.07□□□□□ -1.44
ATG4A-202ENST00000345734 FAM218AQ96MZ4 157 aa6.07□□□□□ -1.44
ATG4A-202ENST00000345734 NCR3O14931 201 aa6.06□□□□□ -1.44
ATG4A-202ENST00000345734 KRTAP9-2Q9BYQ4 174 aa6.06□□□□□ -1.44
ATG4A-202ENST00000345734 XAGE1AQ9HD64 81 aa6.06□□□□□ -1.44
ATG4A-202ENST00000345734 FP248Q71RG6 208 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-202ENST00000345734 PRR15Q8IV56 129 aa6.05□□□□□ -1.44
ATG4A-202ENST00000345734 KRTAP1-5Q9BYS1 174 aa6.05□□□□□ -1.44
ATG4A-202ENST00000345734 UBE2DNLQ8IWF7 75 aa6.05□□□□□ -1.44
ATG4A-202ENST00000345734 A0A0U1RQV1 116 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 SLPIP03973 132 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 MUC7Q8TAX7 377 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 LECT2O14960 151 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 SYCNQ0VAF6 134 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 ATP5EP2Q5VTU8 51 aa6.04□□□□□ -1.44
ATG4A-202ENST00000345734 KMT2AQ03164 3969 aa6.03□□□□□ -1.44
ATG4A-202ENST00000345734 DNAH2Q9P225 4427 aa6.03□□□□□ -1.44
ATG4A-202ENST00000345734 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.03□□□□□ -1.44
ATG4A-202ENST00000345734 RMI2Q96E14 147 aa6.03□□□□□ -1.44
ATG4A-202ENST00000345734 A0A087WYN8 130 aa6.02□□□□□ -1.45
ATG4A-202ENST00000345734 TRBV7-6A0A0J9YX20 115 aa6.02□□□□□ -1.45
ATG4A-202ENST00000345734 NDUFC1O43677 76 aa6.02□□□□□ -1.45
ATG4A-202ENST00000345734 Q6ZRP5 223 aa6.02□□□□□ -1.45
ATG4A-202ENST00000345734 NUPR2A6NF83 97 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 H7BZZ5 65 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 S100A7L2Q5SY68 101 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 TGP01266 2768 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 FBN3Q75N90 2809 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 KLKP1Q107X0 134 aa6.01□□□□□ -1.45
ATG4A-202ENST00000345734 H0YGX0 51 aa6□□□□□ -1.45
ATG4A-202ENST00000345734 HECTD4Q9Y4D8 3996 aa5.99□□□□□ -1.45
ATG4A-202ENST00000345734 DNAL4O96015 105 aa5.99□□□□□ -1.45
ATG4A-202ENST00000345734 IGLV6-57P01721 117 aa5.99□□□□□ -1.45
ATG4A-202ENST00000345734 VPREB1P12018 145 aa5.99□□□□□ -1.45
ATG4A-202ENST00000345734 C6orf99Q4VX62 202 aa5.99□□□□□ -1.45
ATG4A-202ENST00000345734 C9orf129Q5T035 196 aaKnown RBP5.99□□□□□ -1.45
ATG4A-202ENST00000345734 TRBV10-3A0A0K0K1G6 114 aa5.98□□□□□ -1.45
ATG4A-202ENST00000345734 CCKP06307 115 aa5.98□□□□□ -1.45
ATG4A-202ENST00000345734 BAALC-AS2P0C853 105 aa5.98□□□□□ -1.45
ATG4A-202ENST00000345734 KRTAP15-1Q3LI76 137 aa5.98□□□□□ -1.45
ATG4A-202ENST00000345734 MRPL55Q7Z7F7 128 aaKnown RBP5.98□□□□□ -1.45
ATG4A-202ENST00000345734 C22orf24Q9Y442 160 aa5.98□□□□□ -1.45
ATG4A-202ENST00000345734 C20orf197Q8N268 126 aa5.97□□□□□ -1.45
ATG4A-202ENST00000345734 DNAH17Q9UFH2 4485 aa5.97□□□□□ -1.45
ATG4A-202ENST00000345734 DNAH6Q9C0G6 4158 aa5.97□□□□□ -1.45
ATG4A-202ENST00000345734 PSCAO43653 123 aa5.96□□□□□ -1.45
ATG4A-202ENST00000345734 TRAV7A0A075B6U4 112 aa5.96□□□□□ -1.46
ATG4A-202ENST00000345734 TLX1NBP0CAT3 122 aa5.96□□□□□ -1.46
ATG4A-202ENST00000345734 KRTAP21-3Q3LHN1 58 aa5.96□□□□□ -1.46
ATG4A-202ENST00000345734 TRAV23DV6A0A075B6W5 121 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 NBDYA0A0U1RRE5 68 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 M0R378 163 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 FAM168BA1KXE4 195 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 LCE3BQ5TA77 95 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 Q8N814 137 aa5.95□□□□□ -1.46
ATG4A-202ENST00000345734 IGKV3D-7A0A0C4DH55 119 aa5.94□□□□□ -1.46
ATG4A-202ENST00000345734 RBM3P98179 157 aaKnown RBP5.94□□□□□ -1.46
ATG4A-202ENST00000345734 LINC00575Q6W349 94 aa5.93□□□□□ -1.46
ATG4A-202ENST00000345734 A0A087WVE0 104 aa5.93□□□□□ -1.46
ATG4A-202ENST00000345734 M0R2N4 97 aa5.93□□□□□ -1.46
ATG4A-202ENST00000345734 ZNF73O43830 326 aaPredicted RBP5.93□□□□□ -1.46
ATG4A-202ENST00000345734 OBSCN-AS1Q96MR7 158 aa5.93□□□□□ -1.46
ATG4A-202ENST00000345734 LINC00167Q96N53 147 aa5.93□□□□□ -1.46
ATG4A-202ENST00000345734 KRTAP7-1Q8IUC3 87 aa5.92□□□□□ -1.46
ATG4A-202ENST00000345734 DIRC1Q969H9 104 aa5.92□□□□□ -1.46
ATG4A-202ENST00000345734 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms