RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 USP24Q9UPU5 2620 aa6.82□□□□□ -1.32
CHD3-201ENST00000330494 Q6ZQT0 140 aa6.81□□□□□ -1.32
CHD3-201ENST00000330494 GVQW2A0A096LPI5 108 aaPredicted RBP6.81□□□□□ -1.32
CHD3-201ENST00000330494 MGAQ8IWI9 3026 aa6.81□□□□□ -1.32
CHD3-201ENST00000330494 WWC2-AS2Q96NR7 200 aa6.8□□□□□ -1.32
CHD3-201ENST00000330494 COX6B2Q6YFQ2 88 aa6.79□□□□□ -1.32
CHD3-201ENST00000330494 SSBP3-AS1Q7Z2R9 100 aa6.79□□□□□ -1.32
CHD3-201ENST00000330494 EIF4EBP3O60516 100 aaPredicted RBP6.79□□□□□ -1.32
CHD3-201ENST00000330494 GIG44P09565 113 aaPredicted RBP6.79□□□□□ -1.32
CHD3-201ENST00000330494 LITAFQ99732 161 aa6.78□□□□□ -1.32
CHD3-201ENST00000330494 HECTD1Q9ULT8 2610 aa6.78□□□□□ -1.32
CHD3-201ENST00000330494 LINC00313P59037 77 aa6.77□□□□□ -1.32
CHD3-201ENST00000330494 A0A0G2JQZ4 141 aa6.77□□□□□ -1.33
CHD3-201ENST00000330494 A0A1W2PNN7 141 aa6.77□□□□□ -1.33
CHD3-201ENST00000330494 KRTAP1-3Q8IUG1 177 aa6.77□□□□□ -1.33
CHD3-201ENST00000330494 KLK9Q2XQG4 91 aa6.77□□□□□ -1.33
CHD3-201ENST00000330494 VPS13AQ96RL7 3174 aa6.77□□□□□ -1.33
CHD3-201ENST00000330494 Q96NJ1 140 aa6.76□□□□□ -1.33
CHD3-201ENST00000330494 SMR3BP02814 79 aaPredicted RBP6.76□□□□□ -1.33
CHD3-201ENST00000330494 USP34Q70CQ2 3546 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 KTN1-AS1Q86SY8 53 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 Q8NBF4 154 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 TP53AIP1Q9HCN2 124 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 C19orf73Q9NVV2 129 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 LOC110117498A0A087WWA1 95 aa6.75□□□□□ -1.33
CHD3-201ENST00000330494 TRANK1O15050 2925 aa6.74□□□□□ -1.33
CHD3-201ENST00000330494 COA5Q86WW8 74 aa6.74□□□□□ -1.33
CHD3-201ENST00000330494 C15orf56Q8N910 161 aa6.74□□□□□ -1.33
CHD3-201ENST00000330494 ANAPC11Q9NYG5 84 aa6.74□□□□□ -1.33
CHD3-201ENST00000330494 IGLV6-57P01721 117 aa6.74□□□□□ -1.33
CHD3-201ENST00000330494 CR1P17927 2039 aa6.73□□□□□ -1.33
CHD3-201ENST00000330494 CYP4F30PQ9H0H9 118 aa6.73□□□□□ -1.33
CHD3-201ENST00000330494 TRAV22A0A0B4J277 110 aa6.73□□□□□ -1.33
CHD3-201ENST00000330494 CASC10Q5T4H9 136 aa6.72□□□□□ -1.33
CHD3-201ENST00000330494 LAMA1P25391 3075 aa6.72□□□□□ -1.33
CHD3-201ENST00000330494 H3BPC8 53 aa6.72□□□□□ -1.33
CHD3-201ENST00000330494 IGLV1-50A0A075B6I6 118 aa6.71□□□□□ -1.33
CHD3-201ENST00000330494 VCANP13611 3396 aa6.71□□□□□ -1.33
CHD3-201ENST00000330494 C9orf129Q5T035 196 aaKnown RBP6.71□□□□□ -1.34
CHD3-201ENST00000330494 FLNBO75369 2602 aaKnown RBP6.71□□□□□ -1.34
CHD3-201ENST00000330494 LCA10Q71F78 164 aa6.7□□□□□ -1.34
CHD3-201ENST00000330494 K7EQZ3 153 aa6.7□□□□□ -1.34
CHD3-201ENST00000330494 KRTAP1-1Q07627 177 aa6.7□□□□□ -1.34
CHD3-201ENST00000330494 C9orf92A6NGG3 77 aa6.69□□□□□ -1.34
CHD3-201ENST00000330494 LINC01600Q96MT4 127 aa6.69□□□□□ -1.34
CHD3-201ENST00000330494 TRBV7-4A0A0J9YYF1 115 aa6.69□□□□□ -1.34
CHD3-201ENST00000330494 FREM2Q5SZK8 3169 aa6.69□□□□□ -1.34
CHD3-201ENST00000330494 ITPR3Q14573 2671 aa6.68□□□□□ -1.34
CHD3-201ENST00000330494 FLNAP21333 2647 aaKnown RBP6.68□□□□□ -1.34
CHD3-201ENST00000330494 LOC101927531A0A1B0GV80 90 aa6.68□□□□□ -1.34
CHD3-201ENST00000330494 COL6A3P12111 3177 aa6.67□□□□□ -1.34
CHD3-201ENST00000330494 DSCR10P59022 87 aa6.67□□□□□ -1.34
CHD3-201ENST00000330494 H7BZZ5 65 aa6.67□□□□□ -1.34
CHD3-201ENST00000330494 ERC2-IT1O76042 136 aa6.67□□□□□ -1.34
CHD3-201ENST00000330494 A0A087WTM6 91 aa6.66□□□□□ -1.34
CHD3-201ENST00000330494 PRR34Q9NV39 138 aa6.66□□□□□ -1.34
CHD3-201ENST00000330494 CFAP46Q8IYW2 2715 aa6.66□□□□□ -1.34
CHD3-201ENST00000330494 IGFL1Q6UW32 110 aa6.66□□□□□ -1.34
CHD3-201ENST00000330494 KLKP1Q107X0 134 aa6.65□□□□□ -1.34
CHD3-201ENST00000330494 UQCR11O14957 56 aa6.65□□□□□ -1.34
CHD3-201ENST00000330494 KCNQ1DNQ9H478 68 aa6.65□□□□□ -1.34
CHD3-201ENST00000330494 MGAM2Q2M2H8 2515 aa6.65□□□□□ -1.34
CHD3-201ENST00000330494 MIR22HGQ0VDD5 57 aa6.65□□□□□ -1.35
CHD3-201ENST00000330494 A0A1B0GW54 56 aa6.64□□□□□ -1.35
CHD3-201ENST00000330494 Q8N377 158 aa6.64□□□□□ -1.35
CHD3-201ENST00000330494 LINC00528Q8N1L1 170 aa6.63□□□□□ -1.35
CHD3-201ENST00000330494 A8MWP4 228 aa6.63□□□□□ -1.35
CHD3-201ENST00000330494 MYO15AQ9UKN7 3530 aa6.63□□□□□ -1.35
CHD3-201ENST00000330494 PRR15Q8IV56 129 aa6.63□□□□□ -1.35
CHD3-201ENST00000330494 OBSCN-AS1Q96MR7 158 aa6.62□□□□□ -1.35
CHD3-201ENST00000330494 REV3LO60673 3130 aa6.62□□□□□ -1.35
CHD3-201ENST00000330494 CENPEQ02224 2701 aa6.62□□□□□ -1.35
CHD3-201ENST00000330494 ZNF861PO60384 105 aa6.61□□□□□ -1.35
CHD3-201ENST00000330494 LINC00612Q8N6U2 182 aa6.61□□□□□ -1.35
CHD3-201ENST00000330494 APLNQ9ULZ1 77 aa6.6□□□□□ -1.35
CHD3-201ENST00000330494 H3BS24 57 aa6.6□□□□□ -1.35
CHD3-201ENST00000330494 MRPL34Q9BQ48 92 aaKnown RBP6.6□□□□□ -1.35
CHD3-201ENST00000330494 WIPF1O43516 503 aa6.59□□□□□ -1.35
CHD3-201ENST00000330494 LINC00304Q8N9R0 145 aa6.59□□□□□ -1.35
CHD3-201ENST00000330494 CRIPTQ9P021 101 aa6.59□□□□□ -1.35
CHD3-201ENST00000330494 PSORS1C2Q9UIG4 136 aa6.59□□□□□ -1.35
CHD3-201ENST00000330494 HELZ2Q9BYK8 2649 aaKnown RBP6.58□□□□□ -1.36
CHD3-201ENST00000330494 SPEGQ15772 3267 aa6.58□□□□□ -1.36
CHD3-201ENST00000330494 C9orf163Q8N9P6 203 aa6.57□□□□□ -1.36
CHD3-201ENST00000330494 FRYQ5TBA9 3013 aa6.57□□□□□ -1.36
CHD3-201ENST00000330494 EYSQ5T1H1 3165 aa6.57□□□□□ -1.36
CHD3-201ENST00000330494 AKAP13Q12802 2813 aa6.56□□□□□ -1.36
CHD3-201ENST00000330494 RBM12B-AS1Q9P1G2 102 aa6.56□□□□□ -1.36
CHD3-201ENST00000330494 ATRQ13535 2644 aa6.56□□□□□ -1.36
CHD3-201ENST00000330494 IGLV7-43P04211 117 aa6.54□□□□□ -1.36
CHD3-201ENST00000330494 C8orf17Q9NRJ1 99 aa6.54□□□□□ -1.36
CHD3-201ENST00000330494 ZNF575Q86XF7 245 aa6.54□□□□□ -1.36
CHD3-201ENST00000330494 CDC42SE1Q9NRR8 79 aa6.54□□□□□ -1.36
CHD3-201ENST00000330494 SPTBN5Q9NRC6 3674 aaKnown RBP6.53□□□□□ -1.36
CHD3-201ENST00000330494 TNP2Q05952 138 aa6.53□□□□□ -1.36
CHD3-201ENST00000330494 TLX1NBP0CAT3 122 aa6.53□□□□□ -1.36
CHD3-201ENST00000330494 LINC01554Q52M75 96 aa6.53□□□□□ -1.36
CHD3-201ENST00000330494 A0A1B0GVX0 72 aa6.52□□□□□ -1.37
CHD3-201ENST00000330494 PLA2G2DQ9UNK4 145 aa6.5□□□□□ -1.37
CHD3-201ENST00000330494 CHD6Q8TD26 2715 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms