RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 RELNP78509 3460 aa3.14□□□□□ -1.91
PTPN13-201ENST00000316707 KRTAP10-9P60411 292 aa3.14□□□□□ -1.91
PTPN13-201ENST00000316707 SPRR1AP35321 89 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 LINC01554Q52M75 96 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 TRAV22A0A0B4J277 110 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 DEFB105AQ8NG35 78 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 FLNCQ14315 2725 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 LINC01556Q5JQF7 62 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 FAM30AQ9NZY2 134 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 DEFB4AO15263 64 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 PRB1P04280 392 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 DSCR10P59022 87 aa3.13□□□□□ -1.91
PTPN13-201ENST00000316707 IGKV2D-24A0A075B6R9 120 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 Q6ZRP5 223 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 SMG1Q96Q15 3661 aaKnown RBP3.12□□□□□ -1.91
PTPN13-201ENST00000316707 B9D2Q9BPU9 175 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 H3BS24 57 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 FAM229BQ4G0N7 80 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 KRTAP26-1Q6PEX3 210 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 C15orf56Q8N910 161 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 CENPEQ02224 2701 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 KRTAP1-3Q8IUG1 177 aa3.12□□□□□ -1.91
PTPN13-201ENST00000316707 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.11□□□□□ -1.91
PTPN13-201ENST00000316707 CD164Q04900 197 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 IGLV1-50A0A075B6I6 118 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 NUPR2A6NF83 97 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 LINC00208Q96KT6 92 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 H0Y9J4 135 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 DMXL2Q8TDJ6 3036 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 KALRNO60229 2985 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 Q9BRP9 147 aa3.11□□□□□ -1.91
PTPN13-201ENST00000316707 IGLV8-61A0A075B6I0 122 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 KRTAP4-16G5E9R7 235 aaPredicted RBP3.1□□□□□ -1.91
PTPN13-201ENST00000316707 K7EQZ3 153 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 WFDC10BQ8IUB3 73 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 CHD6Q8TD26 2715 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 ACANP16112 2415 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 ATP11AUNQ6ZP68 121 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 BOD1L1Q8NFC6 3051 aa3.1□□□□□ -1.91
PTPN13-201ENST00000316707 PSPHP1O15172 72 aa3.09□□□□□ -1.91
PTPN13-201ENST00000316707 LINC00588Q9Y4M8 146 aa3.09□□□□□ -1.91
PTPN13-201ENST00000316707 GCN1Q92616 2671 aaKnown RBP3.09□□□□□ -1.91
PTPN13-201ENST00000316707 ACYP2P14621 99 aa3.09□□□□□ -1.91
PTPN13-201ENST00000316707 ATMQ13315 3056 aa3.09□□□□□ -1.92
PTPN13-201ENST00000316707 FLNAP21333 2647 aaKnown RBP3.09□□□□□ -1.92
PTPN13-201ENST00000316707 WFDC13Q8IUB5 93 aa3.09□□□□□ -1.92
PTPN13-201ENST00000316707 A8MUN3 132 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 MAP1AP78559 2803 aaPredicted RBP3.08□□□□□ -1.92
PTPN13-201ENST00000316707 LINC00476Q8WZB0 136 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 KRTAP1-1Q07627 177 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 SETXQ7Z333 2677 aaKnown RBP3.08□□□□□ -1.92
PTPN13-201ENST00000316707 A0A087WSZ3 146 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 Q8N9P0 234 aaPredicted RBP3.08□□□□□ -1.92
PTPN13-201ENST00000316707 ITPR1Q14643 2758 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 LRCOL1A6NCL2 159 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 REG3GQ6UW15 175 aa3.08□□□□□ -1.92
PTPN13-201ENST00000316707 ST20-AS1Q8NBB2 130 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 ITPR3Q14573 2671 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 DNAH10OSP0CZ25 163 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 TP53AIP1Q9HCN2 124 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 LOC101927531A0A1B0GV80 90 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 NBPF19A0A087WUL8 3843 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 KRTAP29-1A8MX34 341 aaPredicted RBP3.07□□□□□ -1.92
PTPN13-201ENST00000316707 H0Y9P7 68 aa3.07□□□□□ -1.92
PTPN13-201ENST00000316707 IGSF10Q6WRI0 2623 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 SPRR1BP22528 89 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 IGFL1Q6UW32 110 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 CELSR3Q9NYQ7 3312 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 LRBAP50851 2863 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 A8MWP4 228 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 Q5VV11 94 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 Q75L30 129 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 KTN1-AS1Q86SY8 53 aa3.06□□□□□ -1.92
PTPN13-201ENST00000316707 DEFB131BA0A096LNP1 70 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 ZANQ9Y493 2812 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 LOC400499M0QZD8 3231 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 IGLV7-46A0A075B6I9 117 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 LUZP6Q538Z0 58 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 CAMK2N1Q7Z7J9 78 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 UNC79Q9P2D8 2635 aa3.05□□□□□ -1.92
PTPN13-201ENST00000316707 C11orf45Q8TAV5 145 aa3.04□□□□□ -1.92
PTPN13-201ENST00000316707 MOBPQ13875 183 aa3.04□□□□□ -1.92
PTPN13-201ENST00000316707 KRTAP10-3P60369 221 aa3.04□□□□□ -1.92
PTPN13-201ENST00000316707 C8orf17Q9NRJ1 99 aa3.04□□□□□ -1.92
PTPN13-201ENST00000316707 CDC42SE1Q9NRR8 79 aa3.04□□□□□ -1.92
PTPN13-201ENST00000316707 RPL37AP61513 92 aaKnown RBP3.03□□□□□ -1.92
PTPN13-201ENST00000316707 UTP20O75691 2785 aaKnown RBP3.03□□□□□ -1.92
PTPN13-201ENST00000316707 PHF5AQ7RTV0 110 aaKnown RBP3.03□□□□□ -1.92
PTPN13-201ENST00000316707 C9orf163Q8N9P6 203 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 C14orf177Q52M58 125 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 MXRA5Q9NR99 2828 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 LINC01558Q9Y6Z2 57 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 COL6A3P12111 3177 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 CSMD1Q96PZ7 3565 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 NBEAL2Q6ZNJ1 2754 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 TEX15Q9BXT5 2789 aa3.03□□□□□ -1.92
PTPN13-201ENST00000316707 SPAG11AQ6PDA7 123 aa3.03□□□□□ -1.93
PTPN13-201ENST00000316707 COA5Q86WW8 74 aa3.02□□□□□ -1.93
PTPN13-201ENST00000316707 LINC00472Q9H8W2 130 aa3.02□□□□□ -1.93
PTPN13-201ENST00000316707 DCHS2Q6V1P9 2916 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms