RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OBSCN-AS1Q96MR7 158 aa9.2□□□□□ -0.94
CSPG4-201ENST00000308508 Q1T7F1 81 aa9.2□□□□□ -0.94
CSPG4-201ENST00000308508 FAM104AQ969W3 186 aa9.19□□□□□ -0.94
CSPG4-201ENST00000308508 WIPF1O43516 503 aa9.18□□□□□ -0.94
CSPG4-201ENST00000308508 COX6B2Q6YFQ2 88 aa9.17□□□□□ -0.94
CSPG4-201ENST00000308508 CHD8Q9HCK8 2581 aa9.17□□□□□ -0.94
CSPG4-201ENST00000308508 MTORP42345 2549 aa9.16□□□□□ -0.94
CSPG4-201ENST00000308508 COL4A2P08572 1712 aa9.15□□□□□ -0.94
CSPG4-201ENST00000308508 LINC00304Q8N9R0 145 aa9.15□□□□□ -0.94
CSPG4-201ENST00000308508 ZNF861PO60384 105 aa9.14□□□□□ -0.95
CSPG4-201ENST00000308508 PLA2G2DQ9UNK4 145 aa9.13□□□□□ -0.95
CSPG4-201ENST00000308508 A0A0D9SG42 100 aa9.13□□□□□ -0.95
CSPG4-201ENST00000308508 EIF4EBP3O60516 100 aaPredicted RBP9.12□□□□□ -0.95
CSPG4-201ENST00000308508 KLK9Q2XQG4 91 aa9.12□□□□□ -0.95
CSPG4-201ENST00000308508 C15orf56Q8N910 161 aa9.12□□□□□ -0.95
CSPG4-201ENST00000308508 PRR34Q9NV39 138 aa9.1□□□□□ -0.95
CSPG4-201ENST00000308508 RBM12B-AS1Q9P1G2 102 aa9.1□□□□□ -0.95
CSPG4-201ENST00000308508 C9orf92A6NGG3 77 aa9.09□□□□□ -0.95
CSPG4-201ENST00000308508 TLX1NBP0CAT3 122 aa9.08□□□□□ -0.96
CSPG4-201ENST00000308508 SPTBN4Q9H254 2564 aa9.08□□□□□ -0.96
CSPG4-201ENST00000308508 IGLV5-37A0A075B6J1 123 aa9.08□□□□□ -0.96
CSPG4-201ENST00000308508 CSNK1G2-AS1Q8NCQ2 148 aa9.06□□□□□ -0.96
CSPG4-201ENST00000308508 FLG2Q5D862 2391 aaPredicted RBP9.05□□□□□ -0.96
CSPG4-201ENST00000308508 Q75L30 129 aa9.05□□□□□ -0.96
CSPG4-201ENST00000308508 IGLV5-48A0A075B6I7 105 aa9.04□□□□□ -0.96
CSPG4-201ENST00000308508 LINC00483Q53H64 154 aa9.04□□□□□ -0.96
CSPG4-201ENST00000308508 J3QL48 77 aa9.03□□□□□ -0.96
CSPG4-201ENST00000308508 OCR1Q9BZK8 76 aa9.03□□□□□ -0.96
CSPG4-201ENST00000308508 A0A0G2JQZ4 141 aa9.02□□□□□ -0.97
CSPG4-201ENST00000308508 A0A1W2PNN7 141 aa9.02□□□□□ -0.97
CSPG4-201ENST00000308508 Q8N1X5 172 aa9.02□□□□□ -0.97
CSPG4-201ENST00000308508 POLQO75417 2590 aa9.01□□□□□ -0.97
CSPG4-201ENST00000308508 SRCAPQ6ZRS2 3230 aa9.01□□□□□ -0.97
CSPG4-201ENST00000308508 H3BS24 57 aa9□□□□□ -0.97
CSPG4-201ENST00000308508 A0A1W2PNM2 257 aa9□□□□□ -0.97
CSPG4-201ENST00000308508 C9orf163Q8N9P6 203 aa8.99□□□□□ -0.97
CSPG4-201ENST00000308508 SPRR4Q96PI1 79 aa8.98□□□□□ -0.97
CSPG4-201ENST00000308508 USP24Q9UPU5 2620 aa8.97□□□□□ -0.97
CSPG4-201ENST00000308508 IGLV7-46A0A075B6I9 117 aa8.97□□□□□ -0.97
CSPG4-201ENST00000308508 A0A1B0GU33 70 aa8.96□□□□□ -0.97
CSPG4-201ENST00000308508 CEP295Q9C0D2 2601 aa8.96□□□□□ -0.98
CSPG4-201ENST00000308508 IGLV7-43P04211 117 aa8.96□□□□□ -0.98
CSPG4-201ENST00000308508 A0A0A0MQY5 61 aa8.95□□□□□ -0.98
CSPG4-201ENST00000308508 WWC2-AS2Q96NR7 200 aa8.95□□□□□ -0.98
CSPG4-201ENST00000308508 PRR26Q8N8Z3 221 aa8.94□□□□□ -0.98
CSPG4-201ENST00000308508 CENPFP49454 3210 aa8.94□□□□□ -0.98
CSPG4-201ENST00000308508 BPTFQ12830 3046 aa8.93□□□□□ -0.98
CSPG4-201ENST00000308508 KRTAP24-1Q3LI83 254 aa8.93□□□□□ -0.98
CSPG4-201ENST00000308508 ANAPC11Q9NYG5 84 aa8.92□□□□□ -0.98
CSPG4-201ENST00000308508 ZNF575Q86XF7 245 aa8.92□□□□□ -0.98
CSPG4-201ENST00000308508 PSORS1C2Q9UIG4 136 aa8.91□□□□□ -0.98
CSPG4-201ENST00000308508 A0A087WTM6 91 aa8.91□□□□□ -0.98
CSPG4-201ENST00000308508 DMAC1Q96GE9 116 aa8.9□□□□□ -0.99
CSPG4-201ENST00000308508 CNBPP62633 177 aaKnown RBP8.89□□□□□ -0.99
CSPG4-201ENST00000308508 LINC00612Q8N6U2 182 aa8.89□□□□□ -0.99
CSPG4-201ENST00000308508 CAMK2N1Q7Z7J9 78 aa8.88□□□□□ -0.99
CSPG4-201ENST00000308508 Q5XG85 94 aa8.87□□□□□ -0.99
CSPG4-201ENST00000308508 LINC01558Q9Y6Z2 57 aa8.86□□□□□ -0.99
CSPG4-201ENST00000308508 Q8N9P0 234 aaPredicted RBP8.84□□□□□ -0.99
CSPG4-201ENST00000308508 GIG44P09565 113 aaPredicted RBP8.84□□□□□ -0.99
CSPG4-201ENST00000308508 FAM229BQ4G0N7 80 aa8.84□□□□□ -0.99
CSPG4-201ENST00000308508 HRES1P13985 223 aa8.83□□□□□ -1
CSPG4-201ENST00000308508 C19orf73Q9NVV2 129 aa8.83□□□□□ -1
CSPG4-201ENST00000308508 KRTAP10-11P60412 298 aa8.81□□□□□ -1
CSPG4-201ENST00000308508 CSAG1Q6PB30 78 aa8.8□□□□□ -1
CSPG4-201ENST00000308508 PRRC2CQ9Y520 2896 aaKnown RBP8.8□□□□□ -1
CSPG4-201ENST00000308508 PRAC1Q96KF2 57 aa8.79□□□□□ -1
CSPG4-201ENST00000308508 FP248Q71RG6 208 aaPredicted RBP8.78□□□□□ -1
CSPG4-201ENST00000308508 K7EIL1 84 aa8.78□□□□□ -1
CSPG4-201ENST00000308508 Q5VV11 94 aa8.77□□□□□ -1.01
CSPG4-201ENST00000308508 SMR3BP02814 79 aaPredicted RBP8.76□□□□□ -1.01
CSPG4-201ENST00000308508 Q6ZSA8 131 aa8.75□□□□□ -1.01
CSPG4-201ENST00000308508 FASNP49327 2511 aaKnown RBP8.74□□□□□ -1.01
CSPG4-201ENST00000308508 CASC10Q5T4H9 136 aa8.71□□□□□ -1.01
CSPG4-201ENST00000308508 SPINK7P58062 85 aa8.69□□□□□ -1.02
CSPG4-201ENST00000308508 S4R3F8 94 aa8.69□□□□□ -1.02
CSPG4-201ENST00000308508 MMP24-AS1A0A0U1RRL7 71 aa8.68□□□□□ -1.02
CSPG4-201ENST00000308508 ZCCHC13Q8WW36 166 aaKnown RBP8.66□□□□□ -1.02
CSPG4-201ENST00000308508 A0A096LNT2 108 aa8.66□□□□□ -1.02
CSPG4-201ENST00000308508 CYSTM1Q9H1C7 97 aa8.65□□□□□ -1.02
CSPG4-201ENST00000308508 ROMO1P60602 79 aa8.63□□□□□ -1.03
CSPG4-201ENST00000308508 ASB16-AS1Q495Z4 193 aa8.61□□□□□ -1.03
CSPG4-201ENST00000308508 KRTAP10-3P60369 221 aa8.6□□□□□ -1.03
CSPG4-201ENST00000308508 Q5W150 140 aa8.6□□□□□ -1.03
CSPG4-201ENST00000308508 MGAM2Q2M2H8 2515 aa8.59□□□□□ -1.03
CSPG4-201ENST00000308508 TNP2Q05952 138 aa8.58□□□□□ -1.04
CSPG4-201ENST00000308508 EPG5Q9HCE0 2579 aa8.58□□□□□ -1.04
CSPG4-201ENST00000308508 RPL37P61927 97 aaKnown RBP8.57□□□□□ -1.04
CSPG4-201ENST00000308508 R4GN34 69 aa8.57□□□□□ -1.04
CSPG4-201ENST00000308508 M0R2T5 61 aa8.56□□□□□ -1.04
CSPG4-201ENST00000308508 LINC00472Q9H8W2 130 aa8.54□□□□□ -1.04
CSPG4-201ENST00000308508 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.53□□□□□ -1.04
CSPG4-201ENST00000308508 EP400Q96L91 3159 aa8.53□□□□□ -1.04
CSPG4-201ENST00000308508 SPRR1AP35321 89 aa8.51□□□□□ -1.05
CSPG4-201ENST00000308508 AKAP13Q12802 2813 aa8.49□□□□□ -1.05
CSPG4-201ENST00000308508 KRTAP16-1A8MUX0 517 aa8.49□□□□□ -1.05
CSPG4-201ENST00000308508 GOLGB1Q14789 3259 aaKnown RBP8.49□□□□□ -1.05
CSPG4-201ENST00000308508 H1FX-AS1Q4G0G2 97 aa8.48□□□□□ -1.05
CSPG4-201ENST00000308508 OXTP01178 125 aa8.47□□□□□ -1.05
CSPG4-201ENST00000308508 PLAC8Q9NZF1 115 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 333.8 ms