RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 C8orf17Q9NRJ1 99 aa8.34□□□□□ -1.07
USP38-201ENST00000307017 BRCA2P51587 3418 aa8.33□□□□□ -1.08
USP38-201ENST00000307017 IGLV1-50A0A075B6I6 118 aa8.33□□□□□ -1.08
USP38-201ENST00000307017 UQCR11O14957 56 aa8.33□□□□□ -1.08
USP38-201ENST00000307017 Q8N377 158 aa8.33□□□□□ -1.08
USP38-201ENST00000307017 SZT2Q5T011 3432 aa8.32□□□□□ -1.08
USP38-201ENST00000307017 ERC2-IT1O76042 136 aa8.32□□□□□ -1.08
USP38-201ENST00000307017 TLN1Q9Y490 2541 aaKnown RBP8.31□□□□□ -1.08
USP38-201ENST00000307017 CACNA1AO00555 2505 aa8.31□□□□□ -1.08
USP38-201ENST00000307017 MYO18BQ8IUG5 2567 aa8.3□□□□□ -1.08
USP38-201ENST00000307017 LAMA3Q16787 3333 aa8.3□□□□□ -1.08
USP38-201ENST00000307017 NAV2Q8IVL1 2488 aa8.3□□□□□ -1.08
USP38-201ENST00000307017 CFAP54Q96N23 3096 aa8.3□□□□□ -1.08
USP38-201ENST00000307017 GVQW2A0A096LPI5 108 aaPredicted RBP8.3□□□□□ -1.08
USP38-201ENST00000307017 LINC00483Q53H64 154 aa8.29□□□□□ -1.08
USP38-201ENST00000307017 FREM2Q5SZK8 3169 aa8.29□□□□□ -1.08
USP38-201ENST00000307017 LOC101927531A0A1B0GV80 90 aa8.29□□□□□ -1.08
USP38-201ENST00000307017 H7BZZ5 65 aa8.27□□□□□ -1.09
USP38-201ENST00000307017 A0A0C4DFX4 3053 aa8.27□□□□□ -1.09
USP38-201ENST00000307017 KRTAP10-3P60369 221 aa8.26□□□□□ -1.09
USP38-201ENST00000307017 FAM229BQ4G0N7 80 aa8.25□□□□□ -1.09
USP38-201ENST00000307017 BPTFQ12830 3046 aa8.25□□□□□ -1.09
USP38-201ENST00000307017 KTN1-AS1Q86SY8 53 aa8.24□□□□□ -1.09
USP38-201ENST00000307017 A0A1B0GVX0 72 aa8.23□□□□□ -1.09
USP38-201ENST00000307017 CR1P17927 2039 aa8.23□□□□□ -1.09
USP38-201ENST00000307017 H3BPC8 53 aa8.22□□□□□ -1.09
USP38-201ENST00000307017 Q5VSD8 79 aa8.22□□□□□ -1.09
USP38-201ENST00000307017 WWC2-AS2Q96NR7 200 aa8.22□□□□□ -1.09
USP38-201ENST00000307017 LINC00304Q8N9R0 145 aa8.22□□□□□ -1.09
USP38-201ENST00000307017 PRAC1Q96KF2 57 aa8.22□□□□□ -1.09
USP38-201ENST00000307017 JMJD1CQ15652 2540 aa8.21□□□□□ -1.09
USP38-201ENST00000307017 RANBP2P49792 3224 aaKnown RBP8.21□□□□□ -1.09
USP38-201ENST00000307017 LINC00528Q8N1L1 170 aa8.21□□□□□ -1.09
USP38-201ENST00000307017 LAMA2P24043 3122 aaKnown RBP8.21□□□□□ -1.09
USP38-201ENST00000307017 TLN2Q9Y4G6 2542 aa8.2□□□□□ -1.1
USP38-201ENST00000307017 SETD2Q9BYW2 2564 aaPredicted RBP8.2□□□□□ -1.1
USP38-201ENST00000307017 PRR26Q8N8Z3 221 aa8.19□□□□□ -1.1
USP38-201ENST00000307017 KCNQ1DNQ9H478 68 aa8.18□□□□□ -1.1
USP38-201ENST00000307017 ABCA12Q86UK0 2595 aa8.18□□□□□ -1.1
USP38-201ENST00000307017 ZFYVE26Q68DK2 2539 aa8.17□□□□□ -1.1
USP38-201ENST00000307017 C10orf142B7Z368 130 aa8.17□□□□□ -1.1
USP38-201ENST00000307017 NCOR2Q9Y618 2525 aa8.17□□□□□ -1.1
USP38-201ENST00000307017 REV3LO60673 3130 aa8.16□□□□□ -1.1
USP38-201ENST00000307017 CYP4F30PQ9H0H9 118 aa8.16□□□□□ -1.1
USP38-201ENST00000307017 K7EIL1 84 aa8.16□□□□□ -1.1
USP38-201ENST00000307017 CD164Q04900 197 aa8.16□□□□□ -1.1
USP38-201ENST00000307017 C9orf163Q8N9P6 203 aa8.15□□□□□ -1.1
USP38-201ENST00000307017 CDC42SE1Q9NRR8 79 aa8.15□□□□□ -1.1
USP38-201ENST00000307017 LCA10Q71F78 164 aa8.15□□□□□ -1.1
USP38-201ENST00000307017 Q6ZSA8 131 aa8.14□□□□□ -1.11
USP38-201ENST00000307017 A0A1W2PNM2 257 aa8.13□□□□□ -1.11
USP38-201ENST00000307017 FAM104AQ969W3 186 aa8.13□□□□□ -1.11
USP38-201ENST00000307017 ANKRD17O75179 2603 aaKnown RBP8.12□□□□□ -1.11
USP38-201ENST00000307017 H3BNG1 76 aa8.12□□□□□ -1.11
USP38-201ENST00000307017 ZNF861PO60384 105 aa8.12□□□□□ -1.11
USP38-201ENST00000307017 GIG44P09565 113 aaPredicted RBP8.12□□□□□ -1.11
USP38-201ENST00000307017 CYSTM1Q9H1C7 97 aa8.12□□□□□ -1.11
USP38-201ENST00000307017 KLKP1Q107X0 134 aa8.12□□□□□ -1.11
USP38-201ENST00000307017 TRIOO75962 3097 aa8.1□□□□□ -1.11
USP38-201ENST00000307017 H3BS24 57 aa8.1□□□□□ -1.11
USP38-201ENST00000307017 A0A087WTM6 91 aa8.09□□□□□ -1.11
USP38-201ENST00000307017 UNC80Q8N2C7 3258 aa8.07□□□□□ -1.12
USP38-201ENST00000307017 PRRC2CQ9Y520 2896 aaKnown RBP8.07□□□□□ -1.12
USP38-201ENST00000307017 ACANP16112 2415 aa8.06□□□□□ -1.12
USP38-201ENST00000307017 IGLV7-43P04211 117 aa8.06□□□□□ -1.12
USP38-201ENST00000307017 A0A1B0GW54 56 aa8.05□□□□□ -1.12
USP38-201ENST00000307017 H1FX-AS1Q4G0G2 97 aa8.03□□□□□ -1.12
USP38-201ENST00000307017 VPS13AQ96RL7 3174 aa8.03□□□□□ -1.12
USP38-201ENST00000307017 SPRR4Q96PI1 79 aa8.01□□□□□ -1.13
USP38-201ENST00000307017 CSAG1Q6PB30 78 aa8.01□□□□□ -1.13
USP38-201ENST00000307017 ZNF462Q96JM2 2506 aa8.01□□□□□ -1.13
USP38-201ENST00000307017 POLQO75417 2590 aa8□□□□□ -1.13
USP38-201ENST00000307017 PKD1L2Q7Z442 2459 aa8□□□□□ -1.13
USP38-201ENST00000307017 PRR34Q9NV39 138 aa8□□□□□ -1.13
USP38-201ENST00000307017 PRUNE2Q8WUY3 3088 aa7.98□□□□□ -1.13
USP38-201ENST00000307017 LINC00612Q8N6U2 182 aa7.98□□□□□ -1.13
USP38-201ENST00000307017 CNBPP62633 177 aaKnown RBP7.96□□□□□ -1.13
USP38-201ENST00000307017 C19orf73Q9NVV2 129 aa7.96□□□□□ -1.13
USP38-201ENST00000307017 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.96□□□□□ -1.13
USP38-201ENST00000307017 HRES1P13985 223 aa7.96□□□□□ -1.14
USP38-201ENST00000307017 Q8N9P0 234 aaPredicted RBP7.96□□□□□ -1.14
USP38-201ENST00000307017 F8P00451 2351 aa7.96□□□□□ -1.14
USP38-201ENST00000307017 USP9XQ93008 2570 aaPredicted RBP7.96□□□□□ -1.14
USP38-201ENST00000307017 TNP2Q05952 138 aa7.95□□□□□ -1.14
USP38-201ENST00000307017 Q5XG85 94 aa7.94□□□□□ -1.14
USP38-201ENST00000307017 SPINK7P58062 85 aa7.94□□□□□ -1.14
USP38-201ENST00000307017 Q1T7F1 81 aa7.94□□□□□ -1.14
USP38-201ENST00000307017 OCR1Q9BZK8 76 aa7.93□□□□□ -1.14
USP38-201ENST00000307017 Q8NDZ9 215 aa7.93□□□□□ -1.14
USP38-201ENST00000307017 A0A1B0GU33 70 aa7.93□□□□□ -1.14
USP38-201ENST00000307017 USP34Q70CQ2 3546 aa7.91□□□□□ -1.14
USP38-201ENST00000307017 COL6A3P12111 3177 aa7.91□□□□□ -1.14
USP38-201ENST00000307017 IGLV7-46A0A075B6I9 117 aa7.9□□□□□ -1.15
USP38-201ENST00000307017 A0A0A0MQY5 61 aa7.9□□□□□ -1.15
USP38-201ENST00000307017 ANKRD11Q6UB99 2663 aaPredicted RBP7.89□□□□□ -1.15
USP38-201ENST00000307017 SPTBN4Q9H254 2564 aa7.89□□□□□ -1.15
USP38-201ENST00000307017 A0A096LNT2 108 aa7.88□□□□□ -1.15
USP38-201ENST00000307017 FP248Q71RG6 208 aaPredicted RBP7.87□□□□□ -1.15
USP38-201ENST00000307017 VCANP13611 3396 aa7.86□□□□□ -1.15
USP38-201ENST00000307017 MYO15AQ9UKN7 3530 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms